profit.c 143 KB
Newer Older
1
2
/*
*				profit.c
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3
*
4
* Fit a range of galaxy models to an image.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
5
*
6
*%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Emmanuel Bertin's avatar
Emmanuel Bertin committed
7
*
8
*	This file part of:	SExtractor
Emmanuel Bertin's avatar
Emmanuel Bertin committed
9
*
10
*	Copyright:		(C) 2006-2013 Emmanuel Bertin -- IAP/CNRS/UPMC
11
12
13
14
15
16
17
18
19
20
21
22
23
24
*
*	License:		GNU General Public License
*
*	SExtractor is free software: you can redistribute it and/or modify
*	it under the terms of the GNU General Public License as published by
*	the Free Software Foundation, either version 3 of the License, or
*	(at your option) any later version.
*	SExtractor is distributed in the hope that it will be useful,
*	but WITHOUT ANY WARRANTY; without even the implied warranty of
*	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
*	GNU General Public License for more details.
*	You should have received a copy of the GNU General Public License
*	along with SExtractor. If not, see <http://www.gnu.org/licenses/>.
*
25
*	Last modified:		05/04/2013
26
27
*
*%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
Emmanuel Bertin's avatar
Emmanuel Bertin committed
28
29
30
31
32

#ifdef HAVE_CONFIG_H
#include        "config.h"
#endif

33
34
35
36
#ifndef HAVE_MATHIMF_H
#define _GNU_SOURCE
#endif

37
#include	<math.h>
Emmanuel Bertin's avatar
Emmanuel Bertin committed
38
39
40
41
42
43
44
45
#include	<stdio.h>
#include	<stdlib.h>
#include	<string.h>

#include	"define.h"
#include	"globals.h"
#include	"prefs.h"
#include	"fits/fitscat.h"
46
#include	"levmar/levmar.h"
Emmanuel Bertin's avatar
Emmanuel Bertin committed
47
48
49
#include	"fft.h"
#include	"fitswcs.h"
#include	"check.h"
50
#include	"image.h"
Emmanuel Bertin's avatar
Emmanuel Bertin committed
51
52
53
54
#include	"pattern.h"
#include	"psf.h"
#include	"profit.h"

55
56
static double	prof_gammainc(double x, double a),
		prof_gamma(double x);
57
58
static float	prof_interpolate(profstruct *prof, float *posin);
static float	interpolate_pix(float *posin, float *pix, int *naxisn,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
59
60
		interpenum interptype);

61
static void	make_kernel(float pos, float *kernel, interpenum interptype);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
62
63
64

/*------------------------------- variables ---------------------------------*/

Emmanuel Bertin's avatar
Emmanuel Bertin committed
65
66
const int	interp_kernwidth[5]={1,2,4,6,8};

67
68
const int	flux_flag[PARAM_NPARAM] = {0,
					1,0,0,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
69
70
71
72
73
74
75
76
					1,0,0,0,0,
					1,0,0,0,
					1,0,0,0,0,0,0,0,
					1,0,0,
					1,0,0,
					1,0,0
					};

Emmanuel Bertin's avatar
Emmanuel Bertin committed
77
/* "Local" global variables for debugging purposes */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
78
79
int theniter, the_gal;
static picstruct	*the_field, *the_wfield;
80
profitstruct		*theprofit,*thedprofit, *thepprofit, *theqprofit;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
81
82

/****** profit_init ***********************************************************
83
PROTO	profitstruct profit_init(psfstruct *psf, unsigned int modeltype)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
84
PURPOSE	Allocate and initialize a new profile-fitting structure.
85
86
INPUT	Pointer to PSF structure,
	Model type.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
87
88
89
OUTPUT	A pointer to an allocated profit structure.
NOTES	-.
AUTHOR	E. Bertin (IAP)
90
VERSION	22/04/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
91
 ***/
92
profitstruct	*profit_init(psfstruct *psf, unsigned int modeltype)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
93
94
  {
   profitstruct		*profit;
95
   int			t, nmodels;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
96
97
98

  QCALLOC(profit, profitstruct, 1);
  profit->psf = psf;
99
100
101
102
103
  QMALLOC(profit->prof, profstruct *, MODEL_NMAX);
  nmodels = 0;
  for (t=1; t<(1<<MODEL_NMAX); t<<=1)
    if (modeltype&t)
      profit->prof[nmodels++] = prof_init(profit, t);
104
105
106
107
108
109
110
111
112
113
/* Allocate memory for the complete model */
  QMALLOC16(profit->modpix, float, PROFIT_MAXMODSIZE*PROFIT_MAXMODSIZE);
  QMALLOC16(profit->modpix2, float, PROFIT_MAXMODSIZE*PROFIT_MAXMODSIZE);
  QMALLOC16(profit->cmodpix, float, PROFIT_MAXMODSIZE*PROFIT_MAXMODSIZE);
  QMALLOC16(profit->psfpix, float, PROFIT_MAXMODSIZE*PROFIT_MAXMODSIZE);
  QMALLOC16(profit->objpix, PIXTYPE, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
  QMALLOC16(profit->objweight, PIXTYPE, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
  QMALLOC16(profit->lmodpix, PIXTYPE, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
  QMALLOC16(profit->lmodpix2, PIXTYPE, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
  QMALLOC16(profit->resi, float, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
114
  QMALLOC16(profit->presi, float, profit->nparam);
115
  QMALLOC16(profit->covar, float, profit->nparam*profit->nparam);
116
  profit->nprof = nmodels;
117
  profit->fluxfac = 1.0;	/* Default */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
118
119
120
121
122
123
124
125
126
127
128
129

  return profit;
  }  


/****** profit_end ************************************************************
PROTO	void prof_end(profstruct *prof)
PURPOSE	End (deallocate) a profile-fitting structure.
INPUT	Prof structure.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
130
VERSION	12/07/2012
Emmanuel Bertin's avatar
Emmanuel Bertin committed
131
132
133
134
135
136
137
 ***/
void	profit_end(profitstruct *profit)
  {
   int	p;

  for (p=0; p<profit->nprof; p++)
    prof_end(profit->prof[p]);
138
139
140
141
142
143
144
145
146
  free(profit->modpix);
  free(profit->modpix2);
  free(profit->cmodpix);
  free(profit->psfpix);
  free(profit->lmodpix);
  free(profit->lmodpix2);
  free(profit->objpix);
  free(profit->objweight);
  free(profit->resi);
147
  free(profit->presi);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
148
149
  free(profit->prof);
  free(profit->covar);
150
  QFFTWF_FREE(profit->psfdft);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
  free(profit);

  return;
  }


/****** profit_fit ************************************************************
PROTO	void profit_fit(profitstruct *profit, picstruct *field,
		picstruct *wfield, objstruct *obj, obj2struct *obj2)
PURPOSE	Fit profile(s) convolved with the PSF to a detected object.
INPUT	Array of profile structures,
	Number of profiles,
	Pointer to the profile-fitting structure,
	Pointer to the field,
	Pointer to the field weight,
	Pointer to the obj.
OUTPUT	Pointer to an allocated fit structure (containing details about the
	fit).
NOTES	It is a modified version of the lm_minimize() of lmfit.
AUTHOR	E. Bertin (IAP)
171
VERSION	05/04/2013
Emmanuel Bertin's avatar
Emmanuel Bertin committed
172
173
174
175
176
 ***/
void	profit_fit(profitstruct *profit,
		picstruct *field, picstruct *wfield,
		objstruct *obj, obj2struct *obj2)
  {
177
    profitstruct	*pprofit, *qprofit;
178
    patternstruct	*pattern;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
179
180
    psfstruct		*psf;
    checkstruct		*check;
181
    double		emx2,emy2,emxy, a , cp,sp, cn, bn, n,
182
			sump,sumq, sumpw2,sumqw2,sumpqw, sump0,sumq0, err;
183
    PIXTYPE		valp,valq,sig2;
184
185
186
    float		param0[PARAM_NPARAM], param1[PARAM_NPARAM],
			param[PARAM_NPARAM],
			**list,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
187
			*cov,
188
			psf_fwhm, dchi2, aspect, chi2;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
189
190
    int			*index,
			i,j,p, nparam, nparam2, ncomp, nprof;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
191
192

  nparam = profit->nparam;
193
  nparam2 = nparam*nparam;
194
  nprof = profit->nprof;
195

Emmanuel Bertin's avatar
Emmanuel Bertin committed
196
  if (profit->psfdft)
197
198
    QFFTWF_FREE(profit->psfdft);

Emmanuel Bertin's avatar
Emmanuel Bertin committed
199
200
201

  psf = profit->psf;
  profit->pixstep = psf->pixstep;
202
  obj2->prof_flag = 0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
203
204

/* Create pixmaps at image resolution */
205
206
  profit->ix = (int)(obj->mx + 0.49999);/* internal convention: 1st pix = 0 */
  profit->iy = (int)(obj->my + 0.49999);/* internal convention: 1st pix = 0 */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
207
  psf_fwhm = psf->masksize[0]*psf->pixstep;
208
  profit->objnaxisn[0] = (((int)((obj->xmax-obj->xmin+1) + psf_fwhm + 0.499)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
209
		*1.2)/2)*2 + 1;
210
  profit->objnaxisn[1] = (((int)((obj->ymax-obj->ymin+1) + psf_fwhm + 0.499)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
211
212
213
214
215
		*1.2)/2)*2 + 1;
  if (profit->objnaxisn[1]<profit->objnaxisn[0])
    profit->objnaxisn[1] = profit->objnaxisn[0];
  else
    profit->objnaxisn[0] = profit->objnaxisn[1];
216
217
  if (profit->objnaxisn[0]>PROFIT_MAXOBJSIZE)
    {
218
219
    profit->subsamp = ceil((float)profit->objnaxisn[0]/PROFIT_MAXOBJSIZE);
    profit->objnaxisn[1] = (profit->objnaxisn[0] /= (int)profit->subsamp);
220
221
222
    obj2->prof_flag |= PROFLAG_OBJSUB;
    }
  else
223
    profit->subsamp = 1.0;
224
  profit->nobjpix = profit->objnaxisn[0]*profit->objnaxisn[1];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
225

226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
/* Create pixmap at model resolution */
  profit->modnaxisn[0] =
	((int)(profit->objnaxisn[0]*profit->subsamp/profit->pixstep
		+0.4999)/2+1)*2; 
  profit->modnaxisn[1] =
	((int)(profit->objnaxisn[1]*profit->subsamp/profit->pixstep
		+0.4999)/2+1)*2; 
  if (profit->modnaxisn[1] < profit->modnaxisn[0])
    profit->modnaxisn[1] = profit->modnaxisn[0];
  else
    profit->modnaxisn[0] = profit->modnaxisn[1];
  if (profit->modnaxisn[0]>PROFIT_MAXMODSIZE)
    {
    profit->pixstep = (double)profit->modnaxisn[0] / PROFIT_MAXMODSIZE;
    profit->modnaxisn[0] = profit->modnaxisn[1] = PROFIT_MAXMODSIZE;
    obj2->prof_flag |= PROFLAG_MODSUB;
    }
  profit->nmodpix = profit->modnaxisn[0]*profit->modnaxisn[1];

Emmanuel Bertin's avatar
Emmanuel Bertin committed
245
246
247
248
249
250
251
/* Use (dirty) global variables to interface with lmfit */
  the_field = field;
  the_wfield = wfield;
  theprofit = profit;
  profit->obj = obj;
  profit->obj2 = obj2;

252
253
254
/* Compute the local PSF */
  profit_psf(profit);

Emmanuel Bertin's avatar
Emmanuel Bertin committed
255
  profit->nresi = profit_copyobjpix(profit, field, wfield);
256
  profit->npresi = 0;
257
/* Check if the number of constraints exceeds the number of free parameters */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
258
259
  if (profit->nresi < nparam)
    {
260
261
262
    if (FLAG(obj2.prof_vector))
      for (p=0; p<nparam; p++)
        obj2->prof_vector[p] = 0.0;
263
264
265
266
267
268
    if (FLAG(obj2.prof_errvector))
      for (p=0; p<nparam; p++)
        obj2->prof_errvector[p] = 0.0;
    if (FLAG(obj2.prof_errmatrix))
      for (p=0; p<nparam2; p++)
        obj2->prof_errmatrix[p] = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
269
    obj2->prof_niter = 0;
270
    obj2->prof_flag |= PROFLAG_NOTCONST;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
271
272
273
274
    return;
    }

/* Set initial guesses and boundaries */
275
276
277
  profit->guesssigbkg = profit->sigma = obj->sigbkg;
  profit->guessdx = obj->mx - (int)(obj->mx+0.49999);
  profit->guessdy = obj->my - (int)(obj->my+0.49999);
278
279
280
281
282
283
  if ((profit->guessflux = obj2->flux_auto) <= 0.0)
    profit->guessflux = 0.0;
  if ((profit->guessfluxmax = 10.0*obj2->fluxerr_auto) <= profit->guessflux)
    profit->guessfluxmax = profit->guessflux;
  if (profit->guessfluxmax <= 0.0)
    profit->guessfluxmax = 1.0;
284
285
286
287
  if ((profit->guessradius = 0.5*psf->fwhm) < obj2->hl_radius)
    profit->guessradius = obj2->hl_radius;
  profit->guessaspect = obj->b/obj->a;
  profit->guessposang = obj->theta;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
288
289
290
291

  profit_resetparams(profit);

/* Actual minimisation */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
292
  fft_reset();
293
the_gal++;
294

Emmanuel Bertin's avatar
Emmanuel Bertin committed
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
/*
char str[1024];
sprintf(str, "obj_%04d.fits", the_gal);
catstruct *bcat;
float *bpix, *opix,*lmodpix,*objpix;
bcat=read_cat("base.fits");
QMALLOC(bpix, float, field->npix);
QFSEEK(bcat->file, bcat->tab->bodypos, SEEK_SET, bcat->filename);
read_body(bcat->tab, bpix, field->npix); 
free_cat(&bcat,1);
bcat=read_cat(str);
QMALLOC(opix, float, profit->nobjpix);
QFSEEK(bcat->file, bcat->tab->bodypos, SEEK_SET, bcat->filename);
read_body(bcat->tab, opix, profit->nobjpix); 
free_cat(&bcat,1);
addfrombig(bpix, field->width, field->height,
		profit->objpix, profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, -1.0);
objpix = profit->objpix;
lmodpix = opix;
for (i=profit->nobjpix; i--;)
*(objpix++) += *(lmodpix++);
free(bpix);
free(opix);
*/
Emmanuel Bertin's avatar
Emmanuel Bertin committed
320
  profit->niter = profit_minimize(profit, PROFIT_MAXITER);
321
/*
Emmanuel Bertin's avatar
Emmanuel Bertin committed
322
323
324
325
326
327
328
329
330
profit_residuals(profit,field,wfield, 0.0, profit->paraminit, NULL);
check=initcheck(str, CHECK_OTHER,1);
check->width = profit->objnaxisn[0];
check->height = profit->objnaxisn[1];
reinitcheck(field,check);
memcpy(check->pix, profit->lmodpix, profit->nobjpix*sizeof(float));
reendcheck(field,check);
endcheck(check);

331
332
333
334
335
336
337
  chi2 = profit->chi2;
  for (p=0; p<nparam; p++)
    param1[p] = profit->paraminit[p];
  profit_resetparams(profit);
  for (p=0; p<nparam; p++)
    profit->paraminit[p] = param1[p] + (profit->paraminit[p]<param1[p]?1.0:-1.0)
			* sqrt(profit->covar[p*(nparam+1)]);
338

339
340
341
342
343
344
345
346
347
348
349
350
  profit->niter = profit_minimize(profit, PROFIT_MAXITER);
  if (chi2<profit->chi2)
    for (p=0; p<nparam; p++)
      profit->paraminit[p] = param1[p];

list = profit->paramlist;
index = profit->paramindex;
for (i=0; i<PARAM_NPARAM; i++)
if (list[i] && i!= PARAM_SPHEROID_ASPECT && i!=PARAM_SPHEROID_POSANG)
profit->freeparam_flag[index[i]] = 0;
profit->niter = profit_minimize(profit, PROFIT_MAXITER);
*/
351

352
353
354
355
356
  if (profit->nlimmin)
    obj2->prof_flag |= PROFLAG_MINLIM;
  if (profit->nlimmax)
    obj2->prof_flag |= PROFLAG_MAXLIM;

Emmanuel Bertin's avatar
Emmanuel Bertin committed
357
358
359
360
  for (p=0; p<nparam; p++)
    profit->paramerr[p]= sqrt(profit->covar[p*(nparam+1)]);

/* CHECK-Images */
361
362
363
  if ((check = prefs.check[CHECK_PROFILES]))
    {
    profit_residuals(profit,field,wfield, 0.0, profit->paraminit, NULL);
364
365
366
367
368
369
370
371
    if (profit->subsamp>1.0)
      addcheck_resample(check, profit->lmodpix,
		profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, 1.0/profit->subsamp,
		1.0/(profit->subsamp*profit->subsamp));
    else
      addcheck(check, profit->lmodpix,
		profit->objnaxisn[0],profit->objnaxisn[1],
372
373
		profit->ix,profit->iy, 1.0);
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
374

Emmanuel Bertin's avatar
Emmanuel Bertin committed
375
376
  if ((check = prefs.check[CHECK_SUBPROFILES]))
    {
377
    profit_residuals(profit,field,wfield, 0.0, profit->paraminit, NULL);
378
379
380
381
382
383
384
385
    if (profit->subsamp>1.0)
      addcheck_resample(check, profit->lmodpix,
		profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, 1.0/profit->subsamp,
		-1.0/(profit->subsamp*profit->subsamp));
    else
      addcheck(check, profit->lmodpix,
		profit->objnaxisn[0],profit->objnaxisn[1],
Emmanuel Bertin's avatar
Emmanuel Bertin committed
386
387
		profit->ix,profit->iy, -1.0);
    }
388
389
390
391
392
393
394
395
396
397
398
  if ((check = prefs.check[CHECK_SPHEROIDS]))
    {
/*-- Set to 0 flux components that do not belong to spheroids */
    for (p=0; p<profit->nparam; p++)
      param[p] = profit->paraminit[p];
    list = profit->paramlist;
    index = profit->paramindex;
    for (i=0; i<PARAM_NPARAM; i++)
      if (list[i] && flux_flag[i] && i!= PARAM_SPHEROID_FLUX)
        param[index[i]] = 0.0;
    profit_residuals(profit,field,wfield, 0.0, param, NULL);
399
400
401
402
403
404
405
406
    if (profit->subsamp>1.0)
      addcheck_resample(check, profit->lmodpix,
		profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, 1.0/profit->subsamp,
		1.0/(profit->subsamp*profit->subsamp));
    else
      addcheck(check, profit->lmodpix,
		profit->objnaxisn[0],profit->objnaxisn[1],
407
408
409
410
411
412
413
414
415
416
417
418
419
		profit->ix,profit->iy, 1.0);
    }
  if ((check = prefs.check[CHECK_SUBSPHEROIDS]))
    {
/*-- Set to 0 flux components that do not belong to spheroids */
    for (p=0; p<profit->nparam; p++)
      param[p] = profit->paraminit[p];
    list = profit->paramlist;
    index = profit->paramindex;
    for (i=0; i<PARAM_NPARAM; i++)
      if (list[i] && flux_flag[i] && i!= PARAM_SPHEROID_FLUX)
        param[index[i]] = 0.0;
    profit_residuals(profit,field,wfield, 0.0, param, NULL);
420
421
422
423
424
425
426
427
    if (profit->subsamp>1.0)
      addcheck_resample(check, profit->lmodpix,
		profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, 1.0/profit->subsamp,
		-1.0/(profit->subsamp*profit->subsamp));
    else
      addcheck(check, profit->lmodpix,
		profit->objnaxisn[0],profit->objnaxisn[1],
428
429
430
		profit->ix,profit->iy, -1.0);
    }
  if ((check = prefs.check[CHECK_DISKS]))
Emmanuel Bertin's avatar
Emmanuel Bertin committed
431
    {
432
433
434
435
436
437
438
439
440
/*-- Set to 0 flux components that do not belong to disks */
    for (p=0; p<profit->nparam; p++)
      param[p] = profit->paraminit[p];
    list = profit->paramlist;
    index = profit->paramindex;
    for (i=0; i<PARAM_NPARAM; i++)
      if (list[i] && flux_flag[i] && i!= PARAM_DISK_FLUX)
        param[index[i]] = 0.0;
    profit_residuals(profit,field,wfield, 0.0, param, NULL);
441
442
443
444
445
446
447
448
    if (profit->subsamp>1.0)
      addcheck_resample(check, profit->lmodpix,
		profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, 1.0/profit->subsamp,
		1.0/(profit->subsamp*profit->subsamp));
    else
      addcheck(check, profit->lmodpix,
		profit->objnaxisn[0],profit->objnaxisn[1],
Emmanuel Bertin's avatar
Emmanuel Bertin committed
449
450
		profit->ix,profit->iy, 1.0);
    }
451
452
453
454
455
456
457
458
459
460
461
  if ((check = prefs.check[CHECK_SUBDISKS]))
    {
/*-- Set to 0 flux components that do not belong to disks */
    for (p=0; p<profit->nparam; p++)
      param[p] = profit->paraminit[p];
    list = profit->paramlist;
    index = profit->paramindex;
    for (i=0; i<PARAM_NPARAM; i++)
      if (list[i] && flux_flag[i] && i!= PARAM_DISK_FLUX)
        param[index[i]] = 0.0;
    profit_residuals(profit,field,wfield, 0.0, param, NULL);
462
463
464
465
466
467
468
469
    if (profit->subsamp>1.0)
      addcheck_resample(check, profit->lmodpix,
		profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, 1.0/profit->subsamp,
		-1.0/(profit->subsamp*profit->subsamp));
    else
      addcheck(check, profit->lmodpix,
		profit->objnaxisn[0],profit->objnaxisn[1],
470
471
		profit->ix,profit->iy, -1.0);
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
472
 
473
474
/* Compute compressed residuals */
  profit_residuals(profit,field,wfield, 10.0, profit->paraminit,profit->resi);
475

Emmanuel Bertin's avatar
Emmanuel Bertin committed
476
477
478
479
/* Fill measurement parameters */
  if (FLAG(obj2.prof_vector))
    {
    for (p=0; p<nparam; p++)
480
      obj2->prof_vector[p]= profit->paraminit[p];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
481
482
483
484
485
486
    }
  if (FLAG(obj2.prof_errvector))
    {
    for (p=0; p<nparam; p++)
      obj2->prof_errvector[p]= profit->paramerr[p];
    }
487
488
489
490
491
  if (FLAG(obj2.prof_errmatrix))
    {
    for (p=0; p<nparam2; p++)
      obj2->prof_errmatrix[p]= profit->covar[p];
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
492
493
494

  obj2->prof_niter = profit->niter;
  obj2->flux_prof = profit->flux;
495
496
497
  if (FLAG(obj2.fluxerr_prof))
    {
    err = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
498
499
500
501
502
503
504
505
506
507
508
    cov = profit->covar;
    index = profit->paramindex;
    list = profit->paramlist;
    for (i=0; i<PARAM_NPARAM; i++)
      if (flux_flag[i] && list[i])
        {
        cov = profit->covar + nparam*index[i];
        for (j=0; j<PARAM_NPARAM; j++)
          if (flux_flag[j] && list[j])
            err += cov[index[j]];
        }
509
510
511
    obj2->fluxerr_prof = err>0.0? sqrt(err): 0.0;
    }

512
513
514
  obj2->prof_chi2 = (profit->nresi > profit->nparam)?
		profit->chi2 / (profit->nresi - profit->nparam) : 0.0;

515
/* Position */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
516
517
518
519
520
  if (FLAG(obj2.x_prof))
    {
    i = profit->paramindex[PARAM_X];
    j = profit->paramindex[PARAM_Y];
/*-- Model coordinates follow the FITS convention (first pixel at 1,1) */
521
522
    if (profit->paramlist[PARAM_X])
      {
523
      obj2->x_prof = (double)profit->ix + *profit->paramlist[PARAM_X] + 1.0;
524
525
526
527
528
529
      obj2->poserrmx2_prof = emx2 = profit->covar[i*(nparam+1)];
      }
    else
      emx2 = 0.0;
    if (profit->paramlist[PARAM_Y])
      {
530
      obj2->y_prof = (double)profit->iy + *profit->paramlist[PARAM_Y] + 1.0;
531
532
533
534
535
536
537
538
      obj2->poserrmy2_prof = emy2 = profit->covar[j*(nparam+1)];
      }
    else
      emy2 = 0.0;
    if (profit->paramlist[PARAM_X] && profit->paramlist[PARAM_Y])
      obj2->poserrmxy_prof = emxy = profit->covar[i+j*nparam];
    else
      emxy = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554

/*-- Error ellipse parameters */
    if (FLAG(obj2.poserra_prof))
      {
       double	pmx2,pmy2,temp,theta;

      if (fabs(temp=emx2-emy2) > 0.0)
        theta = atan2(2.0 * emxy,temp) / 2.0;
      else
        theta = PI/4.0;

      temp = sqrt(0.25*temp*temp+ emxy*emxy);
      pmy2 = pmx2 = 0.5*(emx2+emy2);
      pmx2+=temp;
      pmy2-=temp;

555
556
      obj2->poserra_prof = (float)sqrt(pmx2>0.0? pmx2 : 0.0);
      obj2->poserrb_prof = (float)sqrt(pmy2>0.0? pmy2 : 0.0);
557
      obj2->poserrtheta_prof = (float)(theta/DEG);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
558
559
560
561
562
563
564
565
566
567
568
569
      }

    if (FLAG(obj2.poserrcxx_prof))
      {
       double	temp;

      obj2->poserrcxx_prof = (float)(emy2/(temp=emx2*emy2-emxy*emxy));
      obj2->poserrcyy_prof = (float)(emx2/temp);
      obj2->poserrcxy_prof = (float)(-2*emxy/temp);
      }
    }

570
571
572
573
574
575
576
577
578
579
580
581
582
/* Equivalent noise area */
  if (FLAG(obj2.prof_noisearea))
    obj2->prof_noisearea = profit_noisearea(profit);

/* Second order moments and ellipticities */
  if (FLAG(obj2.prof_mx2))
    profit_moments(profit, obj2);

/* Second order moments of the convolved model (used by other parameters) */
  if (FLAG(obj2.prof_convmx2))
    profit_convmoments(profit, obj2);

/* "Hybrid" magnitudes */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
583
584
585
586
587
588
  if (FLAG(obj2.fluxcor_prof))
    {
    profit_residuals(profit,field,wfield, 0.0, profit->paraminit, NULL);
    profit_fluxcor(profit, obj, obj2);
    }

589
/* Do measurements on the rasterised model (surface brightnesses) */
590
  if (FLAG(obj2.fluxeff_prof))
591
    profit_surface(profit, obj2); 
Emmanuel Bertin's avatar
Emmanuel Bertin committed
592

593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
/* Background offset */
  if (FLAG(obj2.prof_offset_flux))
    {
    obj2->prof_offset_flux = *profit->paramlist[PARAM_BACK];
    obj2->prof_offset_fluxerr=profit->paramerr[profit->paramindex[PARAM_BACK]];
    }

/* Point source */
  if (FLAG(obj2.prof_dirac_flux))
    {
    obj2->prof_dirac_flux = *profit->paramlist[PARAM_DIRAC_FLUX];
    obj2->prof_dirac_fluxerr =
		profit->paramerr[profit->paramindex[PARAM_DIRAC_FLUX]];
    }

608
/* Spheroid */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
609
610
  if (FLAG(obj2.prof_spheroid_flux))
    {
611
612
613
614
615
616
617
618
619
    if ((aspect = *profit->paramlist[PARAM_SPHEROID_ASPECT]) > 1.0)
      {
      *profit->paramlist[PARAM_SPHEROID_REFF] *= aspect;
      profit->paramerr[profit->paramindex[PARAM_SPHEROID_REFF]] *= aspect;
      profit->paramerr[profit->paramindex[PARAM_SPHEROID_ASPECT]]
			/= (aspect*aspect);
      *profit->paramlist[PARAM_SPHEROID_ASPECT] = 1.0 / aspect;
      *profit->paramlist[PARAM_SPHEROID_POSANG] += 90.0;
      }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
    obj2->prof_spheroid_flux = *profit->paramlist[PARAM_SPHEROID_FLUX];
    obj2->prof_spheroid_fluxerr =
		profit->paramerr[profit->paramindex[PARAM_SPHEROID_FLUX]];
    obj2->prof_spheroid_reff = *profit->paramlist[PARAM_SPHEROID_REFF];
    obj2->prof_spheroid_refferr = 
		profit->paramerr[profit->paramindex[PARAM_SPHEROID_REFF]];
    obj2->prof_spheroid_aspect = *profit->paramlist[PARAM_SPHEROID_ASPECT];
    obj2->prof_spheroid_aspecterr = 
		profit->paramerr[profit->paramindex[PARAM_SPHEROID_ASPECT]];
    obj2->prof_spheroid_theta =
			fmod_m90_p90(*profit->paramlist[PARAM_SPHEROID_POSANG]);
    obj2->prof_spheroid_thetaerr = 
		profit->paramerr[profit->paramindex[PARAM_SPHEROID_POSANG]];
    if (FLAG(obj2.prof_spheroid_sersicn))
      {
      obj2->prof_spheroid_sersicn = *profit->paramlist[PARAM_SPHEROID_SERSICN];
      obj2->prof_spheroid_sersicnerr = 
		profit->paramerr[profit->paramindex[PARAM_SPHEROID_SERSICN]];
      }
639
640
641
642
643
    else
      obj2->prof_spheroid_sersicn = 4.0;
    if (FLAG(obj2.prof_spheroid_peak))
      {
      n = obj2->prof_spheroid_sersicn;
644
      bn = 2.0*n - 1.0/3.0 + 4.0/(405.0*n) + 46.0/(25515.0*n*n)
645
		+ 131.0/(1148175*n*n*n);	/* Ciotti & Bertin 1999 */
646
      cn = n * prof_gamma(2.0*n) * pow(bn, -2.0*n);
647
      obj2->prof_spheroid_peak = obj2->prof_spheroid_reff>0.0?
648
	obj2->prof_spheroid_flux
649
		/ (2.0 * PI * cn
650
		* obj2->prof_spheroid_reff*obj2->prof_spheroid_reff
651
		* obj2->prof_spheroid_aspect)
652
653
	: 0.0;
      if (FLAG(obj2.prof_spheroid_fluxeff))
654
655
656
        obj2->prof_spheroid_fluxeff = obj2->prof_spheroid_peak * exp(-bn);
      if (FLAG(obj2.prof_spheroid_fluxmean))
        obj2->prof_spheroid_fluxmean = obj2->prof_spheroid_peak * cn;
657
      }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
658
659
660
661
662
    }

/* Disk */
  if (FLAG(obj2.prof_disk_flux))
    {
663
664
665
666
667
668
669
670
671
    if ((aspect = *profit->paramlist[PARAM_DISK_ASPECT]) > 1.0)
      {
      *profit->paramlist[PARAM_DISK_SCALE] *= aspect;
      profit->paramerr[profit->paramindex[PARAM_DISK_SCALE]] *= aspect;
      profit->paramerr[profit->paramindex[PARAM_DISK_ASPECT]]
			/= (aspect*aspect);
      *profit->paramlist[PARAM_DISK_ASPECT] = 1.0 / aspect;
      *profit->paramlist[PARAM_DISK_POSANG] += 90.0;
      }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
    obj2->prof_disk_flux = *profit->paramlist[PARAM_DISK_FLUX];
    obj2->prof_disk_fluxerr =
		profit->paramerr[profit->paramindex[PARAM_DISK_FLUX]];
    obj2->prof_disk_scale = *profit->paramlist[PARAM_DISK_SCALE];
    obj2->prof_disk_scaleerr =
		profit->paramerr[profit->paramindex[PARAM_DISK_SCALE]];
    obj2->prof_disk_aspect = *profit->paramlist[PARAM_DISK_ASPECT];
    obj2->prof_disk_aspecterr =
		profit->paramerr[profit->paramindex[PARAM_DISK_ASPECT]];
    obj2->prof_disk_theta = fmod_m90_p90(*profit->paramlist[PARAM_DISK_POSANG]);
    obj2->prof_disk_thetaerr =
		profit->paramerr[profit->paramindex[PARAM_DISK_POSANG]];
    if (FLAG(obj2.prof_disk_inclination))
      {
      obj2->prof_disk_inclination = acos(obj2->prof_disk_aspect) / DEG;
      if (FLAG(obj2.prof_disk_inclinationerr))
        {
        a = sqrt(1.0-obj2->prof_disk_aspect*obj2->prof_disk_aspect);
        obj2->prof_disk_inclinationerr = obj2->prof_disk_aspecterr
					/(a>0.1? a : 0.1)/DEG;
        }
      }

695
696
697
    if (FLAG(obj2.prof_disk_peak))
      {
      obj2->prof_disk_peak = obj2->prof_disk_scale>0.0?
698
	obj2->prof_disk_flux
699
700
701
702
	/ (2.0 * PI * obj2->prof_disk_scale*obj2->prof_disk_scale
		* obj2->prof_disk_aspect)
	: 0.0;
      if (FLAG(obj2.prof_disk_fluxeff))
703
704
705
        obj2->prof_disk_fluxeff = obj2->prof_disk_peak * 0.186682; /* e^-(b_n)*/
      if (FLAG(obj2.prof_disk_fluxmean))
        obj2->prof_disk_fluxmean = obj2->prof_disk_peak * 0.355007;/* b_n^(-2)*/
706
707
      }

Emmanuel Bertin's avatar
Emmanuel Bertin committed
708
709
710
/* Disk pattern */
    if (prefs.pattern_flag)
      {
711
      profit_residuals(profit,field,wfield, PROFIT_DYNPARAM,
712
			profit->paraminit,profit->resi);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
      pattern = pattern_init(profit, prefs.pattern_type,
		prefs.prof_disk_patternncomp);
      pattern_fit(pattern, profit);
      if (FLAG(obj2.prof_disk_patternspiral))
        obj2->prof_disk_patternspiral = pattern_spiral(pattern);
      if (FLAG(obj2.prof_disk_patternvector))
        {
        ncomp = pattern->size[2];
        for (p=0; p<ncomp; p++)
          obj2->prof_disk_patternvector[p] = (float)pattern->coeff[p];
        }
      if (FLAG(obj2.prof_disk_patternmodvector))
        {
        ncomp = pattern->ncomp*pattern->nfreq;
        for (p=0; p<ncomp; p++)
          obj2->prof_disk_patternmodvector[p] = (float)pattern->mcoeff[p];
        }
      if (FLAG(obj2.prof_disk_patternargvector))
        {
        ncomp = pattern->ncomp*pattern->nfreq;
        for (p=0; p<ncomp; p++)
          obj2->prof_disk_patternargvector[p] = (float)pattern->acoeff[p];
        }
      pattern_end(pattern);
      }

/* Bar */
    if (FLAG(obj2.prof_bar_flux))
      {
      obj2->prof_bar_flux = *profit->paramlist[PARAM_BAR_FLUX];
      obj2->prof_bar_fluxerr =
		profit->paramerr[profit->paramindex[PARAM_BAR_FLUX]];
      obj2->prof_bar_length = *profit->paramlist[PARAM_ARMS_START]
				**profit->paramlist[PARAM_DISK_SCALE];
      obj2->prof_bar_lengtherr = *profit->paramlist[PARAM_ARMS_START]
		  * profit->paramerr[profit->paramindex[PARAM_DISK_SCALE]]
		+ *profit->paramlist[PARAM_DISK_SCALE]
		  * profit->paramerr[profit->paramindex[PARAM_ARMS_START]];
      obj2->prof_bar_aspect = *profit->paramlist[PARAM_BAR_ASPECT];
      obj2->prof_bar_aspecterr =
		profit->paramerr[profit->paramindex[PARAM_BAR_ASPECT]];
      obj2->prof_bar_posang = 
			fmod_m90_p90(*profit->paramlist[PARAM_ARMS_POSANG]);
      obj2->prof_bar_posangerr =
		profit->paramerr[profit->paramindex[PARAM_ARMS_POSANG]];
      if (FLAG(obj2.prof_bar_theta))
        {
        cp = cos(obj2->prof_bar_posang*DEG);
        sp = sin(obj2->prof_bar_posang*DEG);
        a = obj2->prof_disk_aspect;
        obj2->prof_bar_theta = fmod_m90_p90(atan2(a*sp,cp)/DEG
				+ obj2->prof_disk_theta);
        obj2->prof_bar_thetaerr = obj2->prof_bar_posangerr*a/(cp*cp+a*a*sp*sp);
        }

/* Arms */
      if (FLAG(obj2.prof_arms_flux))
        {
        obj2->prof_arms_flux = *profit->paramlist[PARAM_ARMS_FLUX];
        obj2->prof_arms_fluxerr =
		profit->paramerr[profit->paramindex[PARAM_ARMS_FLUX]];
        obj2->prof_arms_pitch =
		fmod_m90_p90(*profit->paramlist[PARAM_ARMS_PITCH]);
        obj2->prof_arms_pitcherr =
		profit->paramerr[profit->paramindex[PARAM_ARMS_PITCH]];
        obj2->prof_arms_start = *profit->paramlist[PARAM_ARMS_START]
				**profit->paramlist[PARAM_DISK_SCALE];
        obj2->prof_arms_starterr = *profit->paramlist[PARAM_ARMS_START]
		  * profit->paramerr[profit->paramindex[PARAM_DISK_SCALE]]
		+ *profit->paramlist[PARAM_DISK_SCALE]
		  * profit->paramerr[profit->paramindex[PARAM_ARMS_START]];
        obj2->prof_arms_quadfrac = *profit->paramlist[PARAM_ARMS_QUADFRAC];
        obj2->prof_arms_quadfracerr =
		profit->paramerr[profit->paramindex[PARAM_ARMS_QUADFRAC]];
        obj2->prof_arms_posang =
			fmod_m90_p90(*profit->paramlist[PARAM_ARMS_POSANG]);
        obj2->prof_arms_posangerr =
		profit->paramerr[profit->paramindex[PARAM_ARMS_POSANG]];
        }
      }
    }

795
/* Star/galaxy classification */
796
  if (FLAG(obj2.prof_class_star) || FLAG(obj2.prof_concentration))
797
    {
798
799
    profit_residuals(profit,field,wfield, PROFIT_DYNPARAM, profit->paraminit,
	FLAG(obj2.prof_class_star) ? profit->resi : NULL);
800
801
802
    pprofit = thepprofit;
    nparam = pprofit->nparam;
    if (pprofit->psfdft)
803
      QFFTWF_FREE(pprofit->psfdft);
804
805
    psf = pprofit->psf;
    pprofit->pixstep = profit->pixstep;
806
807
808
    pprofit->guesssigbkg = profit->guesssigbkg;
    pprofit->guessdx = profit->guessdx;
    pprofit->guessdy = profit->guessdy;
809
810
    pprofit->guessflux = profit->guessflux;
    pprofit->guessfluxmax = profit->guessfluxmax;
811
812
813
    pprofit->guessradius = profit->guessradius;
    pprofit->guessaspect = profit->guessaspect;
    pprofit->guessposang = profit->guessposang;
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
    pprofit->ix = profit->ix;
    pprofit->iy = profit->iy;
    pprofit->objnaxisn[0] = profit->objnaxisn[0];
    pprofit->objnaxisn[1] = profit->objnaxisn[1];
    pprofit->subsamp = profit->subsamp;
    pprofit->nobjpix = profit->nobjpix;
    pprofit->obj = obj;
    pprofit->obj2 = obj2;
    pprofit->nresi = profit_copyobjpix(pprofit, field, wfield);
    pprofit->modnaxisn[0] = profit->modnaxisn[0];
    pprofit->modnaxisn[1] = profit->modnaxisn[1];
    pprofit->nmodpix = profit->nmodpix;
    profit_psf(pprofit);
    pprofit->sigma = obj->sigbkg;
    profit_resetparams(pprofit);
829
830
    if (profit->paramlist[PARAM_X] && profit->paramlist[PARAM_Y])
      {
831
832
833
834
835
836
837
      pprofit->paraminit[pprofit->paramindex[PARAM_X]] = *profit->paramlist[PARAM_X];
      pprofit->paraminit[pprofit->paramindex[PARAM_Y]] = *profit->paramlist[PARAM_Y];
      }
    fft_reset();
    pprofit->paraminit[pprofit->paramindex[PARAM_DIRAC_FLUX]] = profit->flux;
    pprofit->niter = profit_minimize(pprofit, PROFIT_MAXITER);
    profit_residuals(pprofit,field,wfield, PROFIT_DYNPARAM, pprofit->paraminit,
838
			FLAG(obj2.prof_class_star)? pprofit->resi : NULL);
839
840
841
    qprofit = theqprofit;
    nparam = qprofit->nparam;
    if (qprofit->psfdft)
842
      QFFTWF_FREE(qprofit->psfdft);
843
    qprofit->pixstep = profit->pixstep;
844
845
846
    qprofit->guesssigbkg = profit->guesssigbkg;
    qprofit->guessdx = profit->guessdx;
    qprofit->guessdy = profit->guessdy;
847
848
    qprofit->guessflux = profit->guessflux;
    qprofit->guessfluxmax = profit->guessfluxmax;
849
850
851
    qprofit->guessradius = profit->guessradius;
    qprofit->guessaspect = profit->guessaspect;
    qprofit->guessposang = profit->guessposang;
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
    qprofit->ix = profit->ix;
    qprofit->iy = profit->iy;
    qprofit->objnaxisn[0] = profit->objnaxisn[0];
    qprofit->objnaxisn[1] = profit->objnaxisn[1];
    qprofit->subsamp = profit->subsamp;
    qprofit->nobjpix = profit->nobjpix;
    qprofit->obj = obj;
    qprofit->obj2 = obj2;
    qprofit->nresi = profit_copyobjpix(qprofit, field, wfield);
    qprofit->modnaxisn[0] = profit->modnaxisn[0];
    qprofit->modnaxisn[1] = profit->modnaxisn[1];
    qprofit->nmodpix = profit->nmodpix;
    profit_psf(qprofit);
    qprofit->sigma = obj->sigbkg;
    profit_resetparams(qprofit);
    fft_reset();
868
869
870
871
872
873
    qprofit->paraminit[qprofit->paramindex[PARAM_X]]
		= pprofit->paraminit[pprofit->paramindex[PARAM_X]];
    qprofit->paraminit[qprofit->paramindex[PARAM_Y]]
		= pprofit->paraminit[pprofit->paramindex[PARAM_Y]];
    qprofit->paraminit[qprofit->paramindex[PARAM_DISK_FLUX]]
		= pprofit->paraminit[pprofit->paramindex[PARAM_DIRAC_FLUX]];
874
875
876
877
    qprofit->paraminit[qprofit->paramindex[PARAM_DISK_SCALE]] = psf->fwhm/16.0;
    qprofit->paraminit[qprofit->paramindex[PARAM_DISK_ASPECT]] = 1.0;
    qprofit->paraminit[qprofit->paramindex[PARAM_DISK_POSANG]] = 0.0;
    profit_residuals(qprofit,field,wfield, PROFIT_DYNPARAM, qprofit->paraminit,
878
			FLAG(obj2.prof_class_star)? qprofit->resi : NULL);
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
    sump = sumq = sumpw2 = sumqw2 = sumpqw = sump0 = sumq0 = 0.0;
    for (p=0; p<pprofit->nobjpix; p++)
      if (pprofit->objweight[p]>0 && pprofit->objpix[p]>-BIG)
        {
        valp = pprofit->lmodpix[p];
        sump += (double)(valp*pprofit->objpix[p]);
	valq = qprofit->lmodpix[p];
        sumq += (double)(valq*pprofit->objpix[p]);
	sump0 += (double)(valp*valp);
	sumq0 += (double)(valp*valq);
        sig2 = 1.0f/(pprofit->objweight[p]*pprofit->objweight[p]);
        sumpw2 += valp*valp*sig2;
        sumqw2 += valq*valq*sig2;
        sumpqw += valp*valq*sig2;
        }

895
896
    if (FLAG(obj2.prof_class_star))
      {
897
      dchi2 = 0.5*(pprofit->chi2 - profit->chi2);
898
      obj2->prof_class_star = dchi2 < 50.0?
899
	(dchi2 > -50.0? 2.0/(1.0+expf(dchi2)) : 2.0) : 0.0;
900
901
902
      }
    if (FLAG(obj2.prof_concentration))
      {
903
      obj2->prof_concentration = sump>0.0? (sumq/sump - sumq0/sump0) : 1.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
904
      if (FLAG(obj2.prof_concentrationerr))
905
906
907
        obj2->prof_concentrationerr = (sump>0.0 && (err = sumqw2*sump*sump
		+sumpw2*sumq*sumq-2.0*sumpqw*sump*sumq)>0.0)?
			sqrt(err) / (sump*sump) : 1.0;
908
      }
909
910
    }

Emmanuel Bertin's avatar
Emmanuel Bertin committed
911
/* clean up. */
912
  fft_reset();
913

Emmanuel Bertin's avatar
Emmanuel Bertin committed
914
915
916
  return;
  }

917

918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
/****** profit_dfit ***********************************************************
PROTO	void profit_dfit(profitstruct *profit, profitstruct *dprofit,
		picstruct *field, picstruct *dfield,
		picstruct *wfield, picstruct *dwfield,
		objstruct *obj, obj2struct *obj2)
PURPOSE	Fit profile(s) convolved with the PSF to a detected object on the
	detection image, and use the measurement image to scale the flux.
INPUT	Pointer to the measurement profile-fitting structure,
	pointer to the detection profile-fitting structure,
	pointer to the measurement field,
	pointer to the detection field,
	pointer to the measurement field weight,
	pointer to the detection field weight,
	pointer to the obj.
OUTPUT	Pointer to an allocated fit structure (containing details about the
	fit).
NOTES	It is a modified version of the lm_minimize() of lmfit.
AUTHOR	E. Bertin (IAP)
936
VERSION	16/02/2013
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
 ***/
void	profit_dfit(profitstruct *profit, profitstruct *dprofit,
		picstruct *field, picstruct *dfield,
		picstruct *wfield, picstruct *dwfield,
		objstruct *obj, obj2struct *obj2)
  {
    psfstruct		*dpsf;
    double		emx2,emy2,emxy, a , cp,sp, cn, bn, n,
			sumn,sumd;
    PIXTYPE		valn,vald,w2;
    float		param0[PARAM_NPARAM], param1[PARAM_NPARAM],
			param[PARAM_NPARAM],
			**list,
			*cov, *pix,
			psf_fwhm, dchi2, err, aspect, chi2, ffac;
    int			*index,
			i,j,p, nparam, nparam2, ncomp, nprof;

  nparam = dprofit->nparam;
  nparam2 = nparam*nparam;
  nprof = dprofit->nprof;
  if (dprofit->psfdft)
959
    QFFTWF_FREE(dprofit->psfdft);
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993

  dpsf = dprofit->psf;
  dprofit->pixstep = dpsf->pixstep;
  obj2->dprof_flag = 0;

/* Create pixmaps at image resolution */
  dprofit->ix = (int)(obj->mx + 0.49999);/* internal convention: 1st pix = 0 */
  dprofit->iy = (int)(obj->my + 0.49999);/* internal convention: 1st pix = 0 */
  psf_fwhm = dpsf->masksize[0]*dpsf->pixstep;
  dprofit->objnaxisn[0] = (((int)((obj->xmax-obj->xmin+1) + psf_fwhm + 0.499)
		*1.2)/2)*2 + 1;
  dprofit->objnaxisn[1] = (((int)((obj->ymax-obj->ymin+1) + psf_fwhm + 0.499)
		*1.2)/2)*2 + 1;
  if (dprofit->objnaxisn[1]<dprofit->objnaxisn[0])
    dprofit->objnaxisn[1] = dprofit->objnaxisn[0];
  else
    dprofit->objnaxisn[0] = dprofit->objnaxisn[1];
  if (dprofit->objnaxisn[0]>PROFIT_MAXOBJSIZE)
    {
    dprofit->subsamp = ceil((float)dprofit->objnaxisn[0]/PROFIT_MAXOBJSIZE);
    dprofit->objnaxisn[1] = (dprofit->objnaxisn[0] /= (int)dprofit->subsamp);
    obj2->dprof_flag |= PROFLAG_OBJSUB;
    }
  else
    dprofit->subsamp = 1.0;
  dprofit->nobjpix = dprofit->objnaxisn[0]*dprofit->objnaxisn[1];

/* Use (dirty) global variables to interface with lmfit */
  the_field = dfield;
  the_wfield = dwfield;
  dprofit->obj = obj;
  dprofit->obj2 = obj2;

  dprofit->nresi = profit_copyobjpix(dprofit, dfield, dwfield);
994

995
/* Check if the number of constraints exceeds the number of free parameters */
996
  if (dprofit->nresi < nparam || profit->nresi < 1)
997
998
999
1000
    {
    obj2->dprof_flag |= PROFLAG_NOTCONST;
    return;
    }
For faster browsing, not all history is shown. View entire blame