psf.c 42.6 KB
Newer Older
1
2
/*
*				psf.c
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3
*
4
* Fit a PSF model to an image.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
5
*
6
*%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Emmanuel Bertin's avatar
Emmanuel Bertin committed
7
*
8
*	This file part of:	SExtractor
Emmanuel Bertin's avatar
Emmanuel Bertin committed
9
*
Emmanuel Bertin's avatar
Emmanuel Bertin committed
10
*	Copyright:		(C) 1998-2010 Emmanuel Bertin -- IAP/CNRS/UPMC
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
*
*	License:		GNU General Public License
*
*	SExtractor is free software: you can redistribute it and/or modify
*	it under the terms of the GNU General Public License as published by
*	the Free Software Foundation, either version 3 of the License, or
*	(at your option) any later version.
*	SExtractor is distributed in the hope that it will be useful,
*	but WITHOUT ANY WARRANTY; without even the implied warranty of
*	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
*	GNU General Public License for more details.
*	You should have received a copy of the GNU General Public License
*	along with SExtractor. If not, see <http://www.gnu.org/licenses/>.
*
*	Last modified:		11/10/2010
*
*%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
Emmanuel Bertin's avatar
Emmanuel Bertin committed
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44

#ifdef HAVE_CONFIG_H
#include        "config.h"
#endif

#include	<math.h>
#include	<stdio.h>
#include	<stdlib.h>
#include	<string.h>

#include	"define.h"
#include	"globals.h"
#include	"prefs.h"
#include	"fits/fitscat.h"
#include	"check.h"
#include	"filter.h"
#include	"image.h"
Emmanuel Bertin's avatar
Emmanuel Bertin committed
45
#include	"wcs/poly.h"
Emmanuel Bertin's avatar
Emmanuel Bertin committed
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
#include	"psf.h"

/*------------------------------- variables ---------------------------------*/


extern keystruct	objkey[];
extern objstruct	outobj;

/********************************* psf_init **********************************/
/*
Allocate memory and stuff for the PSF-fitting.
*/
void	psf_init(psfstruct *psf)
  {
  QMALLOC(thepsfit, psfitstruct, 1);
61
62
  QMALLOC(thepsfit->x, double, prefs.psf_npsfmax);
  QMALLOC(thepsfit->y, double, prefs.psf_npsfmax);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
63
  QMALLOC(thepsfit->flux, float, prefs.psf_npsfmax);
64
  QMALLOC(thepsfit->fluxerr, float, prefs.psf_npsfmax);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
65
  QMALLOC(ppsfit, psfitstruct, 1); /*?*/
66
67
  QMALLOC(ppsfit->x, double, prefs.psf_npsfmax);
  QMALLOC(ppsfit->y, double, prefs.psf_npsfmax);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
68
  QMALLOC(ppsfit->flux, float, prefs.psf_npsfmax);
69
  QMALLOC(ppsfit->fluxerr, float, prefs.psf_npsfmax);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99

  return;
  }  


/********************************* psf_end ***********************************/
/*
Free memory occupied by the PSF-fitting stuff.
*/
void	psf_end(psfstruct *psf, psfitstruct *psfit)
  {
   int	d, ndim;

  if (psf->pc)
    pc_end(psf->pc);

  ndim = psf->poly->ndim;
  for (d=0; d<ndim; d++)
    free(psf->contextname[d]);
  free(psf->context);
  free(psf->contextname);
  free(psf->contextoffset);
  free(psf->contextscale);
  free(psf->contexttyp);
  poly_end(psf->poly);
  free(psf->maskcomp);
  free(psf->maskloc);
  free(psf->masksize);
  free(psf);

Emmanuel Bertin's avatar
Emmanuel Bertin committed
100
101
102
103
104
  if (psfit)
    {
    free(psfit->x);
    free(psfit->y);
    free(psfit->flux);
105
    free(psfit->fluxerr);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
106
107
    free(psfit);
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268

  return;
  }


/********************************* psf_load *********************************/
/*
Read the PSF data from a FITS file.
*/
psfstruct	*psf_load(char *filename)
  {
   static objstruct	saveobj;
   static obj2struct	saveobj2;
   psfstruct		*psf;
   catstruct		*cat;
   tabstruct		*tab;
   keystruct		*key;
   char			*head, *ci,*co;
   int			deg[POLY_MAXDIM], group[POLY_MAXDIM], ndim, ngroup,
			i,k;

/* Open the cat (well it is not a "cat", but simply a FITS file */
  if (!(cat = read_cat(filename)))
    error(EXIT_FAILURE, "*Error*: PSF file not found: ", filename);

/* OK, we now allocate memory for the PSF structure itself */
  QCALLOC(psf, psfstruct, 1);

/* Store a short copy of the PSF filename */
  if ((ci=strrchr(filename, '/')))
    strcpy(psf->name, ci+1);
  else
    strcpy(psf->name, filename);

  if (!(tab = name_to_tab(cat, "PSF_DATA", 0)))
    error(EXIT_FAILURE, "*Error*: PSF_DATA table not found in catalog ",
	filename);

  head = tab->headbuf;

/*-- Dimension of the polynomial */
  if (fitsread(head, "POLNAXIS", &ndim, H_INT,T_LONG) == RETURN_OK
	&& ndim)
    {
/*-- So we have a polynomial description of the PSF variations */
    if (ndim > POLY_MAXDIM)
        {
        sprintf(gstr, "*Error*: The POLNAXIS parameter in %s exceeds %d",
		psf->name, POLY_MAXDIM);
        error(EXIT_FAILURE, gstr, "");
        }

    QMALLOC(psf->contextname, char *, ndim);
    QMALLOC(psf->context, double *, ndim);
    QMALLOC(psf->contexttyp, t_type, ndim);
    QMALLOC(psf->contextoffset, double, ndim);
    QMALLOC(psf->contextscale, double, ndim);

/*-- We will have to use the outobj structs, so we first save their content */
    saveobj = outobj;
    saveobj2 = outobj2;
/*-- outobj's are used as FLAG arrays, so we initialize them to 0 */
    memset(&outobj, 0, sizeof(outobj));
    memset(&outobj2, 0, sizeof(outobj2));
    for (i=0; i<ndim; i++)
      {
/*---- Polynomial groups */
      sprintf(gstr, "POLGRP%1d", i+1);
      if (fitsread(head, gstr, &group[i], H_INT,T_LONG) != RETURN_OK)
        goto headerror;

/*---- Contexts */
      QMALLOC(psf->contextname[i], char, 80);
      sprintf(gstr, "POLNAME%1d", i+1);
      if (fitsread(head,gstr,psf->contextname[i],H_STRING,T_STRING)!=RETURN_OK)
        goto headerror;
      if (*psf->contextname[i]==(char)':')
/*------ It seems we're facing a FITS header parameter */
        psf->context[i] = NULL;	/* This is to tell we'll have to load */
				/* a FITS header context later on */
      else
/*------ The context element is a dynamic object parameter */
        {
        if ((k = findkey(psf->contextname[i], (char *)objkey,
		sizeof(keystruct)))==RETURN_ERROR)
          {
          sprintf(gstr, "*Error*: %s CONTEXT parameter in %s unknown",
		psf->contextname[i], psf->name);
          error(EXIT_FAILURE, gstr, "");
          }
        key = objkey+k;
        psf->context[i] = key->ptr;
        psf->contexttyp[i] = key->ttype;
/*------ Declare the parameter "active" to trigger computation by SExtractor */
        *((char *)key->ptr) = (char)'\1';
        }
/*---- Scaling of the context parameter */
      sprintf(gstr, "POLZERO%1d", i+1);
      if (fitsread(head, gstr, &psf->contextoffset[i], H_EXPO, T_DOUBLE)
		!=RETURN_OK)
        goto headerror;
      sprintf(gstr, "POLSCAL%1d", i+1);
      if (fitsread(head, gstr, &psf->contextscale[i], H_EXPO, T_DOUBLE)
		!=RETURN_OK)
        goto headerror;
      }

/*-- Number of groups */
    if (fitsread(head, "POLNGRP ", &ngroup, H_INT, T_LONG) != RETURN_OK)
      goto headerror;

    for (i=0; i<ngroup; i++)
      {
/*---- Polynomial degree for each group */
      sprintf(gstr, "POLDEG%1d", i+1);
      if (fitsread(head, gstr, &deg[i], H_INT,T_LONG) != RETURN_OK)
        goto headerror;
      }

    psf->poly = poly_init(group, ndim, deg, ngroup);

/*-- Update the permanent FLAG arrays (that is, perform an "OR" on them) */
    for (ci=(char *)&outobj,co=(char *)&flagobj,i=sizeof(objstruct); i--;)
      *(co++) |= *(ci++);
    for (ci=(char *)&outobj2,co=(char *)&flagobj2,i=sizeof(obj2struct); i--;)
      *(co++) |= *(ci++);

/*-- Restore previous outobj contents */
    outobj = saveobj;
    outobj2 = saveobj2;
    }
  else
    {
/*-- This is a simple, constant PSF */
    psf->poly = poly_init(group, 0, deg, 0);
    psf->context = NULL;
    }

/* Dimensionality of the PSF mask */
  if (fitsread(head, "PSFNAXIS", &psf->maskdim, H_INT, T_LONG) != RETURN_OK)
    goto headerror;
  if (psf->maskdim<2 || psf->maskdim>3)
    error(EXIT_FAILURE, "*Error*: wrong dimensionality for the PSF "
	"mask in ", filename);
  QMALLOC(psf->masksize, int, psf->maskdim);
  for (i=0; i<psf->maskdim; i++)
    psf->masksize[i] = 1;
  psf->masknpix = 1;
  for (i=0; i<psf->maskdim; i++)
    {
    sprintf(gstr, "PSFAXIS%1d", i+1);
    if (fitsread(head, gstr, &psf->masksize[i], H_INT,T_LONG) != RETURN_OK)
      goto headerror;
    psf->masknpix *= psf->masksize[i];
    }

/* PSF FWHM: defaulted to 3 pixels */
 if (fitsread(head, "PSF_FWHM", &psf->fwhm, H_FLOAT,T_DOUBLE) != RETURN_OK)
    psf->fwhm = 3.0;

/* PSF oversampling: defaulted to 1 */
269
270
  if (fitsread(head, "PSF_SAMP", &psf->pixstep,H_FLOAT,T_FLOAT) != RETURN_OK
	|| psf->pixstep <= 0.0)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
271
272
273
274
275
276
277
278
    psf->pixstep = 1.0;

/* Load the PSF mask data */
  key = read_key(tab, "PSF_MASK");
  psf->maskcomp = key->ptr;

  psf->pc = pc_load(cat);

279
  QMALLOC(psf->maskloc, float, psf->masksize[0]*psf->masksize[1]);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308

/* But don't touch my arrays!! */
  blank_keys(tab);

  free_cat(&cat, 1);

  return psf;

headerror:
  error(EXIT_FAILURE, "*Error*: Incorrect or obsolete PSF data in ", filename);
  return NULL;
  }


/***************************** psf_readcontext *******************************/
/*
Read the PSF context parameters in the FITS header.
*/
void	psf_readcontext(psfstruct *psf, picstruct *field)
  {
   static double	contextval[POLY_MAXDIM];
   int			i, ndim;

  ndim = psf->poly->ndim;
  for (i=0; i<ndim; i++)
    if (!psf->context[i])
      {
      psf->context[i] = &contextval[i];
      psf->contexttyp[i] = T_DOUBLE;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
309
      if (fitsread(field->tab->headbuf, psf->contextname[i]+1, &contextval[i],
Emmanuel Bertin's avatar
Emmanuel Bertin committed
310
311
312
313
314
315
316
317
318
319
320
321
322
		H_FLOAT,T_DOUBLE) == RETURN_ERROR)
        {
        sprintf(gstr, "*Error*: %s parameter not found in the header of ",
		psf->contextname[i]+1);
        error(EXIT_FAILURE, gstr, field->rfilename);
        }
      }

  return;
  }


/******************************** psf_fit ***********************************/
323
/*                   standard PSF fit for one component                     */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
324
325
326
327
328
329
330
331
332
/****************************************************************************/

void	psf_fit(psfstruct *psf, picstruct *field, picstruct *wfield,
		objstruct *obj)
{
  checkstruct		*check;
  static obj2struct     *obj2 = &outobj2;
  static double		x2[PSF_NPSFMAX],y2[PSF_NPSFMAX],xy[PSF_NPSFMAX],
			deltax[PSF_NPSFMAX],
333
334
			deltay[PSF_NPSFMAX],
			flux[PSF_NPSFMAX],fluxerr[PSF_NPSFMAX],
Emmanuel Bertin's avatar
Emmanuel Bertin committed
335
			deltaxb[PSF_NPSFMAX],deltayb[PSF_NPSFMAX],
336
			fluxb[PSF_NPSFMAX],fluxerrb[PSF_NPSFMAX],
Emmanuel Bertin's avatar
Emmanuel Bertin committed
337
338
			sol[PSF_NTOT], covmat[PSF_NTOT*PSF_NTOT], 
			vmat[PSF_NTOT*PSF_NTOT], wmat[PSF_NTOT];
339
340
341
  float			*data, *data2, *data3, *weight, *d, *w;
  double		*mat,
			*m, *var,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
342
343
344
345
			dx,dy,
			pix,pix2, wthresh,val,
			backnoise2, gain, radmin2,radmax2,satlevel,chi2,
			r2, valmax, psf_fwhm;
346
  float			**psfmasks, **psfmaskx,**psfmasky,
347
			*ps, *dh, *wh, pixstep;
348
  PIXTYPE		*datah, *weighth;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
349
350
351
352
353
354
355
356
357
  int			i,j,p, npsf,npsfmax, npix, nppix, ix,iy,niter,
			width, height, pwidth,pheight, x,y,
			xmax,ymax, wbad, gainflag, convflag, npsfflag,
			ival,kill=0;
  
  dx = dy = 0.0;
  niter = 0;
  npsfmax = prefs.psf_npsfmax;
  pixstep = 1.0/psf->pixstep;
358
  gain = (field->gain >0.0? field->gain: 1e30);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
359
  backnoise2 = field->backsig*field->backsig;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
360
  satlevel = field->satur_level - obj->bkg;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
361
362
363
364
365
366
367
368
369
370
371
372
373
  wthresh = wfield?wfield->weight_thresh:BIG;
  gainflag = prefs.weightgain_flag;
  psf_fwhm = psf->fwhm*psf->pixstep;

 
  /* Initialize outputs */
  thepsfit->niter = 0;
  thepsfit->npsf = 0;
  for (j=0; j<npsfmax; j++) 
    {
      thepsfit->x[j] = obj2->posx;
      thepsfit->y[j] = obj2->posy;
      thepsfit->flux[j] = 0.0;
374
      thepsfit->fluxerr[j] = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
    }

  /* Scale data area with object "size" */
  ix = (obj->xmax+obj->xmin+1)/2;
  iy = (obj->ymax+obj->ymin+1)/2;
  width = obj->xmax-obj->xmin+1+psf_fwhm;
  if (width < (ival=(int)(psf_fwhm*2)))
    width = ival;
  height = obj->ymax-obj->ymin+1+psf_fwhm;
  if (height < (ival=(int)(psf_fwhm*2)))
    height = ival;
  npix = width*height;
  radmin2 = PSF_MINSHIFT*PSF_MINSHIFT;
  radmax2 = npix/2.0;

  /* Scale total area with PSF FWHM */
  pwidth = (int)(psf->masksize[0]*psf->pixstep)+width;;
  pheight = (int)(psf->masksize[1]*psf->pixstep)+height;
  nppix = pwidth*pheight;

  QMALLOC(weighth, PIXTYPE, npix);
396
  QMALLOC(weight, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
397
  QMALLOC(datah, PIXTYPE, npix);
398
399
400
  QMALLOC(data, float, npix);
  QMALLOC(data2, float, npix);
  QMALLOC(data3, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
401
402
403
404
405
406
407
408
  QMALLOC(mat, double, npix*PSF_NTOT);
  if (prefs.check[CHECK_SUBPSFPROTOS] || prefs.check[CHECK_PSFPROTOS]
      || prefs.check[CHECK_SUBPCPROTOS] || prefs.check[CHECK_PCPROTOS]
      || prefs.check[CHECK_PCOPROTOS])
    {
      QMALLOC(checkmask, PIXTYPE, nppix);
    }

409
410
411
  QMALLOC(psfmasks, float *, npsfmax);
  QMALLOC(psfmaskx, float *, npsfmax);
  QMALLOC(psfmasky, float *, npsfmax);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
412
413
  for (i=0; i<npsfmax; i++)
    {
414
415
416
      QMALLOC(psfmasks[i], float, npix);
      QMALLOC(psfmaskx[i], float, npix);
      QMALLOC(psfmasky[i], float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
    }

  copyimage(field, datah, width, height, ix, iy);

  /* Compute weights */
  wbad = 0;
  if (wfield)
    {
      copyimage(wfield, weighth, width, height, ix, iy);
      for (wh=weighth, w=weight, dh=datah,p=npix; p--;)
        if ((pix=*(wh++)) < wthresh && pix>0
            && (pix2=*(dh++))>-BIG
            && pix2<satlevel)
          *(w++) = 1/sqrt(pix+(pix2>0.0?
                               (gainflag? pix2*pix/backnoise2:pix2)/gain
                               :0.0));
        else
          {
            *(w++) = 0.0;
            wbad++;
          }
    }
  else
    for (w=weight, dh=datah, p=npix; p--;)
      if ((pix=*(dh++))>-BIG && pix<satlevel)
        *(w++) = 1.0/sqrt(backnoise2+(pix>0.0?pix/gain:0.0));
      else
        {
          *(w++) = 0.0;
          wbad++;
        }

  /* Special action if most of the weights are zero!! */
  if (wbad>=npix-3)
    return;

  /* Weight the data */
  dh = datah;
  val = obj->dbkg;      /* Take into account a local background change */
  d = data;
  w = weight;
  for (p=npix; p--;)
    *(d++) = (*(dh++)-val)**(w++);

  /* Get the local PSF */
  psf_build(psf);

  npsfflag = 1;
  r2 = psf_fwhm*psf_fwhm/2.0;
466
  fluxb[0] = fluxerrb[0] = deltaxb[0] = deltayb[0] = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546

  for (npsf=1; npsf<=npsfmax && npsfflag; npsf++)
    {
      kill=0;
/*-- First compute an optimum initial guess for the positions of components */
      if (npsf>1)
        {
/*---- Subtract previously fitted components */
          d = data2;
          dh = datah;
          for (p=npix; p--;)
            *(d++) = (double)*(dh++);
          for (j=0; j<npsf-1; j++)
            {
              d = data2;
              ps = psfmasks[j];
              for (p=npix; p--;)
                *(d++) -= flux[j]**(ps++);
            }
          convolve_image(field, data2, data3, width,height);
/*---- Ignore regions too close to stellar cores */
          for (j=0; j<npsf-1; j++)
            {
              d = data3;
              dy = -((double)(height/2)+deltay[j]);
              for (y=height; y--; dy += 1.0)
                {
                  dx = -((double)(width/2)+deltax[j]);
                  for (x=width; x--; dx+= 1.0, d++)
                    if (dx*dx+dy*dy<r2)
                      *d = -BIG;
                }
            }
/*---- Now find the brightest pixel (poor man's guess, to be refined later) */
          d = data3;
          valmax = -BIG;
          xmax = width/2;
          ymax = height/2;
          for (y=0; y<height; y++)
            for (x=0; x<width; x++)
              {
                if ((val = *(d++))>valmax)
                  {
                    valmax = val;
                    xmax = x;
                    ymax = y;
                  }
              }
          deltax[npsf-1] = (double)(xmax - width/2);
          deltay[npsf-1] = (double)(ymax - height/2);
        }
      else
        {
/*---- Only one component to fit: simply use the barycenter as a guess */
          deltax[npsf-1] = obj->mx - ix;
          deltay[npsf-1] = obj->my - iy;
        }

      niter = 0;
      convflag = 1;
      for (i=0; i<PSF_NITER && convflag; i++)
        {
          convflag = 0,niter++,m=mat;
          for (j=0; j<npsf; j++)
            {
/*------ Resample the PSFs here for the 1st iteration */
              vignet_resample(psf->maskloc, psf->masksize[0], psf->masksize[1],
                              psfmasks[j], width, height,
                              -deltax[j]*pixstep, -deltay[j]*pixstep,
                              pixstep);       
              m=compute_gradient(weight,width,height,
                                 psfmasks[j],psfmaskx[j],psfmasky[j],m);
            }
          
          
          svdfit(mat, data, npix, npsf*PSF_NA, sol, vmat, wmat);
          
          compute_pos( &npsf, &convflag, &npsfflag,radmin2,radmax2,
                       r2, sol,flux, deltax, deltay,&dx,&dy);
        }
547

Emmanuel Bertin's avatar
Emmanuel Bertin committed
548
/*-- Compute variances and covariances */
549
550
551
552
      svdvar(vmat, wmat, npsf*PSF_NA, covmat);
      var = covmat;
      for (j=0; j<npsf; j++, var += (npsf*PSF_NA+1)*PSF_NA)
        {
Emmanuel Bertin's avatar
Emmanuel Bertin committed
553
/*---- First, the error on the flux estimate */      
554
          fluxerr[j] = sqrt(*var)>0.0?  sqrt(*var):999999.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
555
556
          //if (flux[j]<12*fluxerr && j>0)
          //  npsfmax--,flux[j]=0;
557
          if (flux[j]<12*fluxerr[j] && j>0)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
558
559
560
561
562
563
564
565
566
567
568
569
570
571
                 {
                   flux[j]=0,kill++,npsfmax--;
                   //if(j==npsfmax-1)
                   //  kill++;             
                 } 
        }
      if (npsfflag)
        {
/*--- If we reach this point we know the data are worth backuping */
          for (j=0; j<npsf; j++)
            {
              deltaxb[j] = deltax[j];
              deltayb[j] = deltay[j];
              fluxb[j] = flux[j];
572
              fluxerrb[j]=fluxerr[j];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
            }
        }
    }
  npsf=npsf-1-kill;

/* Now keep only fitted stars that fall within the current detection area */
  i = 0;
  for (j=0; j<npsf; j++)
    {      
      x = (int)(deltaxb[j]+0.4999)+width/2;
      y = (int)(deltayb[j]+0.4999)+height/2;
      if (x<0 || x>=width || y<0 || y>=height)
        continue;
      if (weight[y*width+x] < 1/BIG)
        continue;
      if (10*fluxb[j]<fluxb[0] )
        continue;
      if (fluxb[j]<=0 )
        continue; 

      if (FLAG(obj2.poserrmx2_psf))
594
        compute_poserr(j,covmat,sol,obj2,x2,y2,xy, npsf);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
595
596
597
      
      deltax[i] = deltaxb[j];
      deltay[i] = deltayb[j];
598
599
      flux[i] = fluxb[j];
      fluxerr[i++] = fluxerrb[j];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
600
    }
601

Emmanuel Bertin's avatar
Emmanuel Bertin committed
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
  npsf = i;

  /* Compute chi2 if asked to 
  if (FLAG(obj2.chi2_psf))
    {
      for (j=0; j<npsf; j++)
        {
          chi2 = 0.0;
          for (d=data,w=weight,p=0; p<npix; w++,p++)
            {
              pix = *(d++);
              pix -=  psfmasks[j][p]*flux[j]**w;
              chi2 += pix*pix;
              if (chi2>1E29) chi2=1E28;
            }
          obj2->chi2_psf = obj->sigbkg>0.?
            chi2/((npix - 3*npsf)*obj->sigbkg*obj->sigbkg):999999;

        }
      
    }*/
 /* Compute relative chi2 if asked to */
    if (FLAG(obj2.chi2_psf))
    {
      for (j=0; j<npsf; j++)
        {
          chi2 = 0.0;
          for (d=data,w=weight,p=0; p<npix; w++,p++)
            {
              pix = *(d++)/flux[j];
              pix -=  psfmasks[j][p]**w;
              chi2 += pix*pix;
              if (chi2>1E29) chi2=1E28;
            }
          obj2->chi2_psf = flux[j]>0?
		chi2/((npix - 3*npsf)*obj->sigbkg*obj->sigbkg):999999;

        }
      
    }
  /* CHECK images */
  if (prefs.check[CHECK_SUBPSFPROTOS] || prefs.check[CHECK_PSFPROTOS])
    for (j=0; j<npsf; j++)
      {
        vignet_resample(psf->maskloc, psf->masksize[0], psf->masksize[1],
647
                        checkmask, pwidth, pheight,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
648
649
650
651
652
653
654
655
656
657
658
659
660
661
                        -deltax[j]*pixstep, -deltay[j]*pixstep, pixstep);
        if ((check = prefs.check[CHECK_SUBPSFPROTOS]))
          addcheck(check, checkmask, pwidth,pheight, ix,iy,-flux[j]);
        if ((check = prefs.check[CHECK_PSFPROTOS]))
          addcheck(check, checkmask, pwidth,pheight, ix,iy,flux[j]);
      }

  thepsfit->niter = niter;
  thepsfit->npsf = npsf;
  for (j=0; j<npsf; j++)
    {
      thepsfit->x[j] = ix+deltax[j]+1.0;
      thepsfit->y[j] = iy+deltay[j]+1.0;
      thepsfit->flux[j] = flux[j];
662
      thepsfit->fluxerr[j] = fluxerr[j];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
    }




  /* Now the morphology stuff */
  if (prefs.pc_flag)
    {
      width = pwidth-1;
      height = pheight-1;
      npix = width*height;
      copyimage(field, datah, width, height, ix, iy);

      /*-- Re-compute weights */
      if (wfield)
        {
          copyimage(wfield, weighth, width, height, ix, iy);
          for (wh=weighth ,w=weight, p=npix; p--;)
            *(w++) = (pix=*(wh++))<wthresh? sqrt(pix): 0.0;
        }
      else
        for (w=weight, dh=datah, p=npix; p--;)
          *(w++) = ((pix = *(dh++))>-BIG && pix<satlevel)?
            1.0/sqrt(backnoise2+(pix>0.0?pix/gain:0.0))
            :0.0;

      /*-- Weight the data */
      dh = datah;
      d = data;
      w = weight;
      for (p=npix; p--;)
        *(d++) = *(dh++)*(*(w++));

      pc_fit(psf, data, weight, width, height, ix,iy, dx,dy, npix,
             field->backsig);
    }
  
  
  for (i=0; i<prefs.psf_npsfmax; i++)
    {
      QFREE(psfmasks[i]);
      QFREE(psfmaskx[i]);
      QFREE(psfmasky[i]);
    }

  QFREE(psfmasks);
  QFREE(psfmaskx);
  QFREE(psfmasky);
  QFREE(datah);
  QFREE(data);
  QFREE(data2);
  QFREE(data3);
  QFREE(weighth);
  QFREE(weight);
  QFREE(data);
  QFREE(mat);

  if (prefs.check[CHECK_SUBPSFPROTOS] || prefs.check[CHECK_PSFPROTOS]
      || prefs.check[CHECK_SUBPCPROTOS] || prefs.check[CHECK_PCPROTOS]
      || prefs.check[CHECK_PCOPROTOS])
    {
      QFREE(checkmask);
    }

  return;
}


/******************************** double_psf_fit *******************************
****/
/* double fit to make the psf detection on one image and the photometry on anoth
er */
/*******************************************************************************
****/

void    double_psf_fit(psfstruct *ppsf, picstruct *pfield, picstruct *pwfield,
                       objstruct *obj, psfstruct *psf, picstruct *field, 
                       picstruct *wfield)
{
  static double      /* sum[PSF_NPSFMAX]*/ pdeltax[PSF_NPSFMAX],
    pdeltay[PSF_NPSFMAX],psol[PSF_NPSFMAX], pcovmat[PSF_NPSFMAX*PSF_NPSFMAX], 
744
745
    pvmat[PSF_NPSFMAX*PSF_NPSFMAX], pwmat[PSF_NPSFMAX],pflux[PSF_NPSFMAX],
    pfluxerr[PSF_NPSFMAX];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
746

747
748
    double *pmat,
     *pm, /* *pps,  *px, *py,*/
Emmanuel Bertin's avatar
Emmanuel Bertin committed
749
750
751
752
753
    dx,dy,pdx,pdy, /* x1,y1, mx,my,mflux, */
    val, ppix,ppix2, /* dflux, */
    gain, radmin2,radmax2,satlevel
    ,chi2,pwthresh,pbacknoise2, /* mr, */
    r2=0, psf_fwhm,ppsf_fwhm ;
754
755
756
  float         **ppsfmasks, **ppsfmaskx,**ppsfmasky, *pps;
  float         *pdata, *pdata2, *pdata3, *pweight, *pd, *pw, 
		*pdh, *pwh, pixstep,ppixstep;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
757
758
759
760
761
762
763
764
765
  PIXTYPE       *pdatah, *pweighth;
  int                   i,j,k,p, npsf, npix,ix,iy,
    width, height, /* hw,hh, */
    x,y, /* yb, */
    wbad, gainflag,
    ival,npsfmax;
  double *pvar;
  
    static obj2struct   *obj2 = &outobj2;
766

Emmanuel Bertin's avatar
Emmanuel Bertin committed
767
768
769
  pdx = pdy =dx = dy = 0.0;
  ppixstep = 1.0/ppsf->pixstep;
  pixstep = 1.0/psf->pixstep;
770
  gain = (field->gain >0.0? field->gain: 1e30);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
771
772
  npsfmax=prefs.psf_npsfmax;
  pbacknoise2 = pfield->backsig*pfield->backsig;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
773
  satlevel = field->satur_level - obj->bkg;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
774
775
776
777
778
779
780
781
782
783
784
785
786
  gainflag = prefs.weightgain_flag;
  psf_fwhm = psf->fwhm*psf->pixstep;
  ppsf_fwhm = ppsf->fwhm*ppsf->pixstep;
  pwthresh = pwfield?pwfield->weight_thresh:BIG;

  /* Initialize outputs */
  ppsfit->niter = 0;
  ppsfit->npsf = 0;
  for (j=0; j<npsfmax; j++) 
    {
      ppsfit->x[j] = 999999.0;
      ppsfit->y[j] = 999999.0;
      ppsfit->flux[j] = 0.0;
787
788
      ppsfit->fluxerr[j] = 0.0;
      pdeltax[j]= pdeltay[j]=psol[j]= pwmat[j]=pflux[j]=pfluxerr[j]=0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
   
    }

  ix = (obj->xmax+obj->xmin+1)/2;
  iy = (obj->ymax+obj->ymin+1)/2;
  width = obj->xmax-obj->xmin+1+psf_fwhm;
  if (width < (ival=(int)(psf_fwhm*2)))
    width = ival;
  height = obj->ymax-obj->ymin+1+psf_fwhm;
  if (height < (ival=(int)(psf_fwhm*2)))
    height = ival;
  npix = width*height;
  radmin2 = PSF_MINSHIFT*PSF_MINSHIFT;
  radmax2 = npix/2.0;
  psf_fit(psf,field, wfield,obj);
  npsf=thepsfit->npsf;
  
806
807
808
  QMALLOC(ppsfmasks,float *,npsfmax);
  QMALLOC(ppsfmaskx,float *,npsfmax);
  QMALLOC(ppsfmasky,float *,npsfmax);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
809
810
811

  for (i=0; i<npsfmax; i++)
    {
812
813
814
      QMALLOC(ppsfmasks[i],float,npix);
      QMALLOC(ppsfmaskx[i],float,npix);
      QMALLOC(ppsfmasky[i],float,npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
815
816
817
    }

  QMALLOC(pweighth, PIXTYPE, npix);
818
  QMALLOC(pweight, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
819
  QMALLOC(pdatah, PIXTYPE, npix);
820
821
822
  QMALLOC(pdata, float, npix);
  QMALLOC(pdata2, float, npix);
  QMALLOC(pdata3, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
823
824
825
826
827
828
829
  QMALLOC(pmat, double, npix*npsfmax);
  
   for (j=0; j<npsf; j++)
    {
      pdeltax[j] =thepsfit->x[j]-ix-1 ;
      pdeltay[j] =thepsfit->y[j]-iy-1 ;
      ppsfit->flux[j] = 0;
830
      ppsfit->fluxerr[j] = 0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
    }

/*-------------------  Now the photometry fit ---------------------*/
  copyimage(pfield, pdatah, width, height, ix, iy);
   /* Compute photometry weights */
  wbad = 0;
  if (pwfield)
    {
       copyimage(pwfield, pweighth, width, height, ix, iy);
      for (pwh=pweighth, pw=pweight, pdh=pdatah,p=npix; p--;)
        {
        if ((ppix=*(pwh++)) < pwthresh && ppix>0
            && (ppix2=*(pdh++))>-BIG  && ppix2<satlevel)
          {
            *(pw++) = 1/sqrt(ppix+(ppix2>0.0?
			(gainflag? ppix2*ppix/pbacknoise2:ppix2)/gain : 0.0));
          }
      else
          {
            *(pw++) = 0.0;          
            wbad++;
          }
        }
    }
  else
    for (pw=pweight, pdh=pdatah, p=npix; p--;)
      if ((ppix=*(pdh++))>-BIG && ppix<satlevel)
          {
            *(pw++) = 1.0/sqrt(pbacknoise2+(ppix>0.0?ppix/gain:0.0));
          }
      else
        {
          *(pw++) = 0.0;
          wbad++;
        }
  /* Special action if most of the weights are zero!! */
  if (wbad>=npix-3)
    return;

  /* Weight the data */
  pdh = pdatah;
  pd = pdata;
  pw = pweight;
  val = obj->dbkg;
  for (p=npix; p--;)
    *(pd++) = (*(pdh++)-val)**(pw++);

 
  /* Get the photmetry PSF */
   psf_build(ppsf);
  for (j=1; j<=npsf; j++)
    {
      if (j>1)
        {
          /*---- Subtract //previously fitted components in photometry image */
          pd = pdata2;
          pdh = pdatah;
          for (p=npix; p--;)
            *(pd++) = (double)*(pdh++);
          for (k=0; k<j-1; k++)
            {
              pd = pdata2;
              pps = ppsfmasks[k];
              for (p=npix; p--;)
                *(pd++) -= pflux[k]**(pps++);
            }
          convolve_image(pfield, pdata2, pdata3, width,height);
         /*---- Ignore regions too close to stellar cores */
          for (k=0; k<j-1; k++)
            {
              pd = pdata3;
              dy = -((double)(height/2)+pdeltay[k]);
              for (y=height; y--; dy += 1.0)
                {
                  dx = -((double)(width/2)+pdeltax[k]);
                  for (x=width; x--; dx+= 1.0, pd++)
                    if (dx*dx+dy*dy<r2) /*?*/
                      *pd = -BIG;
                }
            } 
        }
   
      pm=pmat;
      for (k=0; k<j; k++)
            {
              /*------ Resample the PSFs here for the 1st iteration */
              vignet_resample(ppsf->maskloc,
			ppsf->masksize[0], ppsf->masksize[1],
			ppsfmasks[k], width, height,
			-pdeltax[k]*ppixstep, -pdeltay[k]*ppixstep,
			ppixstep);              
              pm=compute_gradient_phot(pweight,width,height, ppsfmasks[k],pm);
            }
      
      svdfit(pmat, pdata, npix, j, psol, pvmat, pwmat);  
      compute_pos_phot( &j, psol,pflux);
   
  for (k=0; k<j; k++)
        {
          svdvar(pvmat, pwmat, j, pcovmat);
          pvar = pcovmat;
932
          pfluxerr[k]= sqrt(*pvar)>0.0 && sqrt(*pvar)<99? 
Emmanuel Bertin's avatar
Emmanuel Bertin committed
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
            sqrt(*pvar):99;
        }
    }
  /* Compute chi2 if asked to 
  if (FLAG(obj2.chi2_psf))
    {
      for (j=0; j<npsf; j++)
        {
          chi2 = 0.0;
          for (pd=pdata,pw=pweight,p=0; p<npix; pw++,p++)
            {
              ppix = *(pd++);
              ppix -=  ppsfmasks[j][p]*pflux[j]**pw;
              chi2 += ppix*ppix;
              if (chi2>1E29) chi2=1E28;
            }
          obj2->chi2_psf = obj->sigbkg>0.?
            chi2/((npix - 3*npsf)*obj->sigbkg*obj->sigbkg):999999;

        }
      
    }
 */
 /* Compute relative error if asked to */
  if (FLAG(obj2.chi2_psf))
  {
      for (j=0; j<npsf; j++)
        {
          chi2 = 0.0;
          for (pd=pdata,pw=pweight,p=0; p<npix; pw++,p++)
            {
              ppix = *(pd++)/pflux[j];
              ppix -=  ppsfmasks[j][p]**pw;
              chi2 += ppix*ppix;
              if (chi2>1E29) chi2=1E28;
            }
          obj2->chi2_psf = pflux[j]>0?
		chi2/((npix - 3*npsf)*obj->sigbkg*obj->sigbkg):999999;

        }
      
    }
  ppsfit->niter = thepsfit->niter;
  ppsfit->npsf = npsf;

  for (j=0; j<npsf; j++)
    {
      thepsfit->x[j] = ix+pdeltax[j]+1.0;
      thepsfit->y[j] = iy+pdeltay[j]+1.0;
      thepsfit->flux[j] = pflux[j];
983
      thepsfit->fluxerr[j] = pfluxerr[j];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
984
985
986
      ppsfit->x[j] = ix+pdeltax[j]+1.0;
      ppsfit->y[j] = iy+pdeltay[j]+1.0;
      ppsfit->flux[j] = pflux[j];
987
      ppsfit->fluxerr[j] = pfluxerr[j];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
988
989
990
991
992
993
994
995
996
997
998
999
1000
    }
    
  
  for (i=0; i<npsfmax; i++)
    {
      QFREE(ppsfmasks[i]);
      QFREE(ppsfmaskx[i]);
      QFREE(ppsfmasky[i]);
    }

  
  QFREE(ppsfmasks);
  QFREE(ppsfmaskx);
For faster browsing, not all history is shown. View entire blame