profit.c 92.8 KB
Newer Older
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1001
1002
1003
OUTPUT	Vector of residuals.
NOTES	-.
AUTHOR	E. Bertin (IAP)
1004
VERSION	24/03/2009
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1005
 ***/
1006
1007
float	*profit_residuals(profitstruct *profit, picstruct *field,
		picstruct *wfield, float dynparam, float *param, float *resi)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1008
1009
1010
1011
  {
   int		p;

  memset(profit->modpix, 0,
1012
	profit->modnaxisn[0]*profit->modnaxisn[1]*sizeof(float));
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1013
1014
  for (p=0; p<profit->nparam; p++)
    profit->param[p] = param[p];
1015
1016
/* Simple PSF shortcut */
  if (profit->nprof == 1 && profit->prof[0]->code == PROF_DIRAC)
1017
    {
1018
1019
    profit_resample(profit, profit->psfpix, profit->lmodpix,
		*profit->prof[0]->flux);
1020
1021
    profit->flux = *profit->prof[0]->flux;
    }
1022
1023
  else
    {
1024
    profit->flux = 0.0;
1025
    for (p=0; p<profit->nprof; p++)
1026
      profit->flux += prof_add(profit->prof[p], profit);
1027
1028
1029
    profit_convolve(profit, profit->modpix);
    profit_resample(profit, profit->modpix, profit->lmodpix, 1.0);
    }
1030
  profit_compresi(profit, dynparam, resi);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1031
1032
1033
1034
1035
1036

  return resi;
  }


/****** profit_compresi ******************************************************
1037
1038
PROTO	float *prof_compresi(profitstruct *profit, float dynparam,
			float *resi)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1039
1040
1041
PURPOSE	Compute the vector of residuals between the data and the galaxy
	profile model.
INPUT	Profile-fitting structure,
1042
	dynamic-compression parameter (0=no compression),
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1043
1044
1045
1046
	vector of residuals (output).
OUTPUT	Vector of residuals.
NOTES	-.
AUTHOR	E. Bertin (IAP)
1047
VERSION	07/09/2009
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1048
 ***/
1049
float	*profit_compresi(profitstruct *profit, float dynparam, float *resi)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1050
  {
1051
1052
   double	error;
   float	*resit;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1053
1054
   PIXTYPE	*objpix, *objweight, *lmodpix,
		val,val2,wval, invsig;
1055
   int		npix, i;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1056
1057
1058
1059
1060
1061
1062
  
/* Compute vector of residuals */
  resit = resi;
  objpix = profit->objpix;
  objweight = profit->objweight;
  lmodpix = profit->lmodpix;
  error = 0.0;
1063
1064
  npix = profit->objnaxisn[0]*profit->objnaxisn[1];
  if (dynparam > 0.0)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1065
    {
1066
1067
    invsig = (PIXTYPE)(1.0/dynparam);
    for (i=npix; i--; lmodpix++)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1068
1069
1070
1071
      {
      val = *(objpix++);
      if ((wval=*(objweight++))>0.0)
        {
1072
        val2 = (val - *lmodpix)*wval*invsig;
1073
        val2 = val2>0.0? logf(1.0+val2) : -logf(1.0-val2);
1074
        *(resit++) = val2*dynparam;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1075
1076
1077
        error += val2*val2;
        }
      }
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
    profit->chi2 = dynparam*dynparam*error;
    }
  else
    {
    for (i=npix; i--; lmodpix++)
      {
      val = *(objpix++);
      if ((wval=*(objweight++))>0.0)
        {
        val2 = (val - *lmodpix)*wval;
        *(resit++) = val2;
        error += val2*val2;
        }
      }
    profit->chi2 = error;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1093
1094
1095
1096
1097
1098
1099
    }

  return resi;
  }


/****** profit_resample ******************************************************
1100
PROTO	void	prof_resample(profitstruct *profit, float *inpix,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1101
1102
1103
1104
1105
1106
		PIXTYPE *outpix)
PURPOSE	Resample the current full resolution model to image resolution.
INPUT	Profile-fitting structure.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
1107
VERSION	09/10/2009
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1108
 ***/
1109
1110
void	profit_resample(profitstruct *profit, float *inpix, PIXTYPE *outpix,
	float factor)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1111
  {
1112
1113
   double	flux;
   float	posin[2], posout[2], dnaxisn[2],
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1114
		*dx,*dy,
1115
1116
		xcout,ycout, xcin,ycin, invpixstep, pix, off,step;
   int		d,i, ix,iy,ns;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1117

1118
  xcout = (float)(profit->objnaxisn[0]/2) + 1.0;	/* FITS convention */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1119
1120
  if ((dx=(profit->paramlist[PARAM_X])))
    xcout += *dx;
1121
  ycout = (float)(profit->objnaxisn[1]/2) + 1.0;	/* FITS convention */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1122
1123
1124
1125
  if ((dy=(profit->paramlist[PARAM_Y])))
    ycout += *dy;
  xcin = (profit->modnaxisn[0]/2) + 1.0;		/* FITS convention */
  ycin = (profit->modnaxisn[1]/2) + 1.0;		/* FITS convention */
1126
  invpixstep = profit->subsamp/profit->pixstep;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1127
1128
1129
1130
1131
1132
1133
1134

/* Initialize multi-dimensional counters */
  for (d=0; d<2; d++)
    {
    posout[d] = 1.0;					/* FITS convention */
    dnaxisn[d] = profit->objnaxisn[d]+0.5;
    }

1135
/* Remap each pixel (and rebin if necessary) */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1136
  flux = 0.0;
1137
1138
  ns=(int)profit->subsamp;
  if (ns>1)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1139
    {
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
    step = 1.0/profit->subsamp;
    off = 0.5*(step - 1.0);
    xcin += off;
    ycin += off;
    for (i=profit->objnaxisn[0]*profit->objnaxisn[1]; i--;)
      {
      posin[0] = (posout[0] - xcout)*invpixstep + xcin;
      posin[1] = (posout[1] - ycout)*invpixstep + ycin;
      pix = 0.0;
      for (iy=ns; iy--; posin[1] += step)
        for (ix=ns; ix--; posin[0] += step)
          pix += (PIXTYPE)(factor*interpolate_pix(posin, inpix,
		profit->modnaxisn, INTERP_LANCZOS3));
      flux += (*(outpix++) = pix);
      for (d=0; d<2; d++)
        if ((posout[d]+=1.0) < dnaxisn[d])
          break;
        else
          posout[d] = 1.0;
      }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1160
    }
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
  else
    for (i=profit->objnaxisn[0]*profit->objnaxisn[1]; i--;)
      {
      posin[0] = (posout[0] - xcout)*invpixstep + xcin;
      posin[1] = (posout[1] - ycout)*invpixstep + ycin;
      flux += ((*(outpix++) = (PIXTYPE)(factor*interpolate_pix(posin, inpix,
		profit->modnaxisn, INTERP_LANCZOS3))));
      for (d=0; d<2; d++)
        if ((posout[d]+=1.0) < dnaxisn[d])
          break;
        else
          posout[d] = 1.0;
      }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1174
1175
1176
1177
1178
1179

  return;
  }


/****** profit_convolve *******************************************************
1180
PROTO	void profit_convolve(profitstruct *profit, float *modpix)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1181
1182
1183
1184
1185
1186
1187
1188
PURPOSE	Convolve a model image with the local PSF.
INPUT	Pointer to the profit structure,
	Pointer to the image raster.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	15/09/2008
 ***/
1189
void	profit_convolve(profitstruct *profit, float *modpix)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
  {
  if (!profit->psfdft)
    profit_makedft(profit);

  fft_conv(modpix, profit->psfdft, profit->modnaxisn);

  return;
  }


/****** profit_makedft *******************************************************
PROTO	void profit_makedft(profitstruct *profit)
PURPOSE	Create the Fourier transform of the descrambled PSF component.
INPUT	Pointer to the profit structure.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	22/04/2008
 ***/
void	profit_makedft(profitstruct *profit)
  {
   psfstruct	*psf;
1212
1213
   float      *mask,*maskt, *ppix;
   float       dx,dy, r,r2,rmin,rmin2,rmax,rmax2,rsig,invrsig2;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
   int          width,height,npix,offset, psfwidth,psfheight,psfnpix,
                cpwidth, cpheight,hcpwidth,hcpheight, i,j,x,y;

  if (!(psf=profit->psf))
    return;

  psfwidth = profit->modnaxisn[0];
  psfheight = profit->modnaxisn[1];
  psfnpix = psfwidth*psfheight;
  width = profit->modnaxisn[0];
  height = profit->modnaxisn[1];
  npix = width*height;
1226
  QCALLOC(mask, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
  cpwidth = (width>psfwidth)?psfwidth:width;
  hcpwidth = cpwidth>>1;
  cpwidth = hcpwidth<<1;
  offset = width - cpwidth;
  cpheight = (height>psfheight)?psfheight:height;
  hcpheight = cpheight>>1;
  cpheight = hcpheight<<1;

/* Frame and descramble the PSF data */
  ppix = profit->psfpix + (psfheight/2)*psfwidth + psfwidth/2;
  maskt = mask;
  for (j=hcpheight; j--; ppix+=psfwidth)
    {
    for (i=hcpwidth; i--;)
      *(maskt++) = *(ppix++);      
    ppix -= cpwidth;
    maskt += offset;
    for (i=hcpwidth; i--;)
      *(maskt++) = *(ppix++);      
    }

  ppix = profit->psfpix + ((psfheight/2)-hcpheight)*psfwidth + psfwidth/2;
  maskt += width*(height-cpheight);
  for (j=hcpheight; j--; ppix+=psfwidth)
    {
    for (i=hcpwidth; i--;)
      *(maskt++) = *(ppix++);      
    ppix -= cpwidth;
    maskt += offset;
    for (i=hcpwidth; i--;)
      *(maskt++) = *(ppix++);      
    }

/* Truncate to a disk that has diameter = (box width) */
  rmax = cpwidth - 1.0 - hcpwidth;
  if (rmax > (r=hcpwidth))
    rmax = r;
  if (rmax > (r=cpheight-1.0-hcpheight))
    rmax = r;
  if (rmax > (r=hcpheight))
    rmax = r;
  if (rmax<1.0)
    rmax = 1.0;
  rmax2 = rmax*rmax;
  rsig = psf->fwhm/profit->pixstep;
  invrsig2 = 1/(2*rsig*rsig);
  rmin = rmax - (3*rsig);     /* 3 sigma annulus (almost no aliasing) */
  rmin2 = rmin*rmin;

  maskt = mask;
  dy = 0.0;
  for (y=hcpheight; y--; dy+=1.0)
    {
    dx = 0.0;
    for (x=hcpwidth; x--; dx+=1.0, maskt++)
      if ((r2=dx*dx+dy*dy)>rmin2)
1283
        *maskt *= (r2>rmax2)?0.0:expf((2*rmin*sqrtf(r2)-r2-rmin2)*invrsig2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1284
1285
1286
1287
    dx = -hcpwidth;
    maskt += offset;
    for (x=hcpwidth; x--; dx+=1.0, maskt++)
      if ((r2=dx*dx+dy*dy)>rmin2)
1288
        *maskt *= (r2>rmax2)?0.0:expf((2*rmin*sqrtf(r2)-r2-rmin2)*invrsig2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1289
1290
1291
1292
1293
1294
1295
1296
    }
  dy = -hcpheight;
  maskt += width*(height-cpheight);
  for (y=hcpheight; y--; dy+=1.0)
    {
    dx = 0.0;
    for (x=hcpwidth; x--; dx+=1.0, maskt++)
      if ((r2=dx*dx+dy*dy)>rmin2)
1297
        *maskt *= (r2>rmax2)?0.0:expf((2*rmin*sqrtf(r2)-r2-rmin2)*invrsig2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1298
1299
1300
1301
    dx = -hcpwidth;
    maskt += offset;
    for (x=hcpwidth; x--; dx+=1.0, maskt++)
      if ((r2=dx*dx+dy*dy)>rmin2)
1302
        *maskt *= (r2>rmax2)?0.0:expf((2*rmin*sqrtf(r2)-r2-rmin2)*invrsig2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
    }

/* Finally move to Fourier space */
  profit->psfdft = fft_rtf(mask, profit->modnaxisn);

  free(mask);

  return;
  }


/****** profit_copyobjpix *****************************************************
PROTO	int profit_copyobjpix(profitstruct *profit, picstruct *field,
			picstruct *wfield)
PURPOSE	Copy a piece of the input field image to a profit structure.
INPUT	Pointer to the profit structure,
	Pointer to the field structure,
	Pointer to the field weight structure.
OUTPUT	The number of valid pixels copied.
NOTES	Global preferences are used.
AUTHOR	E. Bertin (IAP)
1324
VERSION	07/10/2009
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1325
1326
1327
1328
 ***/
int	profit_copyobjpix(profitstruct *profit, picstruct *field,
			picstruct *wfield)
  {
1329
1330
1331
1332
1333
   float	dx, dy2, dr2, rad2;
   PIXTYPE	*pixin,*spixin, *wpixin,*swpixin, *pixout,*wpixout,
		backnoise2, invgain, satlevel, wthresh, pix,spix, wpix,swpix;
   int		i,x,y, xmin,xmax,ymin,ymax, w,h,dw, npix, off, gainflag,
		badflag, sflag, sx,sy,sn,sw, rem, ix,iy;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1334
1335
1336
1337

/* First put the image background to -BIG */
  pixout = profit->objpix;
  wpixout = profit->objweight;
1338
  for (i=profit->objnaxisn[0]*profit->objnaxisn[1]; i--;)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
    {
    *(pixout++) = -BIG;
    *(wpixout++) = 0.0;
    }

/* Don't go further if out of frame!! */
  ix = profit->ix;
  iy = profit->iy;
  if (ix<0 || ix>=field->width || iy<field->ymin || iy>=field->ymax)
    return 0;

  backnoise2 = field->backsig*field->backsig;
1351
  sn = (int)profit->subsamp;
1352
1353
1354
1355
1356
  sflag = (sn>1);
  w = profit->objnaxisn[0]*sn;
  h = profit->objnaxisn[1]*sn;
  if (sflag)
    backnoise2 *= (PIXTYPE)sn;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
  invgain = (field->gain > 0.0) ? 1.0/field->gain : 0.0;
  satlevel = field->satur_level - profit->obj->bkg;
  rad2 = h/2.0;
  if (rad2 > w/2.0)
    rad2 = w/2.0;
  rad2 *= rad2;

/* Set the image boundaries */
  pixout = profit->objpix;
  wpixout = profit->objweight;
  ymin = iy-h/2;
  ymax = ymin + h;
  if (ymin<field->ymin)
    {
1371
1372
1373
1374
    off = (field->ymin-ymin-1)/sn + 1;
    pixout += off*profit->objnaxisn[0];
    wpixout += off*profit->objnaxisn[0];
    ymin += off*sn;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1375
1376
    }
  if (ymax>field->ymax)
1377
    ymax -= ((ymax-field->ymax-1)/sn + 1)*sn;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1378
1379
1380

  xmin = ix-w/2;
  xmax = xmin + w;
1381
  dw = 0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1382
1383
  if (xmax>field->width)
    {
1384
1385
1386
    off = (xmax-field->width-1)/sn + 1;
    dw += off;
    xmax -= off*sn;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1387
1388
1389
    }
  if (xmin<0)
    {
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
    off = (-xmin-1)/sn + 1;
    pixout += off;
    wpixout += off;
    dw += off;
    xmin += off*sn;
    }
/* Make sure the input frame size is a multiple of the subsampling step */
  if (sflag)
    {
/*
    if (((rem=ymax-ymin)%sn))
      {
      ymin += rem/2;
      ymax -= (rem-rem/2);
      }
    if (((rem=xmax-xmin)%sn))
      {
      xmin += rem/2;
      pixout += rem/2;
      wpixout += rem/2;
      dw += rem;
      xmax -= (rem-rem/2);
      }
*/
    sw = field->width;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1415
1416
1417
1418
1419
1420
1421
1422
    }

/* Copy the right pixels to the destination */
  npix = 0;
  if (wfield)
    {
    wthresh = wfield->weight_thresh;
    gainflag = prefs.weightgain_flag;
1423
    if (sflag)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1424
      {
1425
1426
/*---- Sub-sampling case */
      for (y=ymin; y<ymax; y+=sn, pixout+=dw,wpixout+=dw)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1427
        {
1428
        for (x=xmin; x<xmax; x+=sn)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1429
          {
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
          pix = wpix = 0.0;
          badflag = 0;
          for (sy=0; sy<sn; sy++)
            {
            dy2 = (y+sy-iy);
            dy2 *= dy2;
            dx = (x-ix);
            spixin = &PIX(field, x, y+sy);
            swpixin = &PIX(wfield, x, y+sy);
            for (sx=sn; sx--;)
              {
              dr2 = dy2 + dx*dx;
              dx++;
              spix = *(spixin++);
              swpix = *(swpixin++);
              if (dr2<rad2 && spix>-BIG && spix<satlevel && swpix<wthresh)
                {
                pix += spix;
                wpix += swpix;
                }
              else
                badflag=1;
              }
            }
          *(pixout++) = pix;
          if (!badflag)	/* A single bad pixel ruins is all (saturation, etc.)*/
            {
            *(wpixout++) = 1.0 / sqrt(wpix+(pix>0.0?
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1458
		(gainflag? pix*wpix/backnoise2:pix)*invgain : 0.0));
1459
1460
1461
1462
            npix++;
            }
          else
            *(wpixout++) = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1463
1464
1465
          }
        }
      }
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
    else
      for (y=ymin; y<ymax; y++, pixout+=dw,wpixout+=dw)
        {
        dy2 = y-iy;
        dy2 *= dy2;
        pixin = &PIX(field, xmin, y);
        wpixin = &PIX(wfield, xmin, y);
        for (x=xmin; x<xmax; x++)
          {
          dx = x-ix;
          dr2 = dy2 + dx*dx;
          pix = *(pixin++);
          wpix = *(wpixin++);
          if (dr2<rad2 && pix>-BIG && pix<satlevel && wpix<wthresh)
            {
            *(pixout++) = pix;
            *(wpixout++) = 1.0 / sqrt(wpix+(pix>0.0?
		(gainflag? pix*wpix/backnoise2:pix)*invgain : 0.0));
            npix++;
            }
          else
            *(pixout++) = *(wpixout++) = 0.0;
          }
        }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1490
1491
    }
  else
1492
1493
    {
    if (sflag)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1494
      {
1495
1496
/*---- Sub-sampling case */
      for (y=ymin; y<ymax; y+=sn, pixout+=dw, wpixout+=dw)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1497
        {
1498
        for (x=xmin; x<xmax; x+=sn)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1499
          {
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
          pix = 0.0;
          badflag = 0;
          for (sy=0; sy<sn; sy++)
            {
            dy2 = y+sy-iy;
            dy2 *= dy2;
            dx = x-ix;
            spixin = &PIX(field, x, y+sy);
            for (sx=sn; sx--;)
              {
              dr2 = dy2 + dx*dx;
              dx++;
              spix = *(spixin++);
              if (dr2<rad2 && spix>-BIG && spix<satlevel)
                pix += spix;
              else
                badflag=1;
              }
            }
          *(pixout++) = pix;
          if (!badflag)	/* A single bad pixel ruins is all (saturation, etc.)*/
            {
            *(wpixout++) = 1.0 / sqrt(backnoise2 + (pix>0.0?pix*invgain:0.0));
            npix++;
            }
          else
            *(wpixout++) = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1527
1528
1529
          }
        }
      }
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
    else
      for (y=ymin; y<ymax; y++, pixout+=dw,wpixout+=dw)
        {
        dy2 = y-iy;
        dy2 *= dy2;
        pixin = &PIX(field, xmin, y);
        for (x=xmin; x<xmax; x++)
          {
          dx = x-ix;
          dr2 = dy2 + dx*dx;
          pix = *(pixin++);
          if (dr2<rad2 && pix>-BIG && pix<satlevel)
            {
            *(pixout++) = pix;
            *(wpixout++) = 1.0 / sqrt(backnoise2 + (pix>0.0?pix*invgain : 0.0));
            npix++;
            }
          else
            *(pixout++) = *(wpixout++) = 0.0;
          }
        }
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1552
1553
1554
1555
1556
1557
 
  return npix;
  }


/****** profit_spiralindex ****************************************************
1558
PROTO	float profit_spiralindex(profitstruct *profit)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1559
1560
1561
1562
1563
1564
1565
1566
1567
PURPOSE	Compute the spiral index of a galaxy image (positive for arms
	extending counter-clockwise and negative for arms extending CW, 0 for
	no spiral pattern).
INPUT	Profile-fitting structure.
OUTPUT	Vector of residuals.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	18/09/2008
 ***/
1568
float profit_spiralindex(profitstruct *profit)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1569
1570
1571
  {
   objstruct	*obj;
   obj2struct	*obj2;
1572
   float	*dx,*dy, *fdx,*fdy, *gdx,*gdy, *gdxt,*gdyt, *pix,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
		fwhm, invtwosigma2, hw,hh, ohw,ohh, x,y,xstart, tx,ty,txstart,
		gx,gy, r2, spirindex, invsig, val, sep;
   PIXTYPE	*fpix;
   int		i,j, npix;

  npix = profit->objnaxisn[0]*profit->objnaxisn[1];

  obj = profit->obj;
  obj2 = profit->obj2;
/* Compute simple derivative vectors at a fraction of the object scale */
  fwhm = obj2->hl_radius * 2.0 / 4.0;
  if (fwhm < 2.0)
    fwhm = 2.0;
  sep = 2.0;

  invtwosigma2 = -(2.35*2.35/(2.0*fwhm*fwhm));
1589
  hw = (float)(profit->objnaxisn[0]/2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1590
  ohw = profit->objnaxisn[0] - hw;
1591
  hh = (float)(profit->objnaxisn[1]/2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1592
1593
1594
  ohh = profit->objnaxisn[1] - hh;
  txstart = -hw;
  ty = -hh;
1595
  QMALLOC(dx, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
  pix = dx;
  for (j=profit->objnaxisn[1]; j--; ty+=1.0)
    {
    tx = txstart;
    y = ty < -0.5? ty + hh : ty - ohh;
    for (i=profit->objnaxisn[0]; i--; tx+=1.0)
      {
      x = tx < -0.5? tx + hw : tx - ohw;
      *(pix++) = exp(invtwosigma2*((x+sep)*(x+sep)+y*y))
		- exp(invtwosigma2*((x-sep)*(x-sep)+y*y));
      }
    }
1608
  QMALLOC(dy, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
  pix = dy;
  ty = -hh;
  for (j=profit->objnaxisn[1]; j--; ty+=1.0)
    {
    tx = txstart;
    y = ty < -0.5? ty + hh : ty - ohh;
    for (i=profit->objnaxisn[0]; i--; tx+=1.0)
      {
      x = tx < -0.5? tx + hw : tx - ohw;
      *(pix++) = exp(invtwosigma2*(x*x+(y+sep)*(y+sep)))
		- exp(invtwosigma2*(x*x+(y-sep)*(y-sep)));
      }
    }

1623
  QMALLOC(gdx, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1624
1625
1626
1627
1628
1629
1630
1631
1632
  gdxt = gdx;
  fpix = profit->objpix;
  invsig = npix/profit->sigma;
  for (i=npix; i--; fpix++)
    {
    val = *fpix > -1e29? *fpix*invsig : 0.0;
    *(gdxt++) = (val>0.0? log(1.0+val) : -log(1.0-val));
    }
  gdy = NULL;			/* to avoid gcc -Wall warnings */
1633
  QMEMCPY(gdx, gdy, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
  fdx = fft_rtf(dx, profit->objnaxisn);
  fft_conv(gdx, fdx, profit->objnaxisn);
  fdy = fft_rtf(dy, profit->objnaxisn);
  fft_conv(gdy, fdy, profit->objnaxisn);

/* Compute estimator */
  invtwosigma2 = -1.18*1.18 / (2.0*obj2->hl_radius*obj2->hl_radius);
  xstart = -hw - obj->mx + (int)(obj->mx+0.49999);
  y = -hh -  obj->my + (int)(obj->my+0.49999);;
  spirindex = 0.0;
  gdxt = gdx;
  gdyt = gdy;
  for (j=profit->objnaxisn[1]; j--; y+=1.0)
    {
    x = xstart;
    for (i=profit->objnaxisn[0]; i--; x+=1.0)
      {
      gx = *(gdxt++);
      gy = *(gdyt++);
      if ((r2=x*x+y*y)>0.0)
        spirindex += (x*y*(gx*gx-gy*gy)+gx*gy*(y*y-x*x))/r2
			* exp(invtwosigma2*r2);
      }
    }

  free(dx);
  free(dy);
  free(fdx);
  free(fdy);
  free(gdx);
  free(gdy);

  return spirindex;
  }


/****** profit_moments ****************************************************
1671
PROTO	void profit_moments(profitstruct *profit, obj2struct *obj2)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1672
PURPOSE	Compute the 2nd order moments from the unconvolved object model.
1673
1674
INPUT	Profile-fitting structure,
	Pointer to obj2 structure.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1675
1676
1677
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
1678
VERSION	17/09/2009
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1679
 ***/
1680
void	 profit_moments(profitstruct *profit, obj2struct *obj2)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1681
  {
1682
   double	mx,my, sum, mx2,my2,mxy, den, temp,temp2,pmx2,theta;
1683
1684
   float	*pix,
		hw,hh, x,y, xstart, val, r2max;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1685
1686
   int		ix,iy;

1687
1688
  hw = (float)(profit->modnaxisn[0]/2);
  hh = (float)(profit->modnaxisn[1]/2);
1689
  r2max = hw<hh? hw*hw : hh*hh;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1690
1691
1692
1693
1694
1695
1696
1697
  xstart = -hw;
  y = -hh;
  pix = profit->modpix;
  mx2 = my2 = mxy = mx = my = sum = 0.0;
  for (iy=profit->modnaxisn[1]; iy--; y+=1.0)
    {
    x = xstart;
    for (ix=profit->modnaxisn[0]; ix--; x+=1.0)
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
      if (y*y+x*x <= r2max)
        {
        val = *(pix++);
        sum += val;
        mx  += val*x;
        my  += val*y;
        mx2 += val*x*x;
        mxy += val*x*y;
        my2 += val*y*y;
        }
      else
        pix++;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1710
1711
1712
1713
1714
1715
1716
1717
1718
    }

  if (sum <= 1.0/BIG)
    sum = 1.0;
  mx /= sum;
  my /= sum;
  obj2->prof_mx2 = mx2 = mx2/sum - mx*mx;
  obj2->prof_my2 = my2 = my2/sum - my*my;
  obj2->prof_mxy = mxy = mxy/sum - mx*my;
1719
1720
1721

/* Handle fully correlated profiles (which cause a singularity...) */
  if ((temp2=mx2*my2-mxy*mxy)<0.00694)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1722
    {
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
    mx2 += 0.0833333;
    my2 += 0.0833333;
    temp2 = mx2*my2-mxy*mxy;
    }

  if (FLAG(obj2.prof_e1))
    {
    if (mx2+my2 > 1.0/BIG)
      {
      obj2->prof_pol1 = (mx2 - my2) / (mx2+my2);
      obj2->prof_pol2 = 2.0*mxy / (mx2 + my2);
      if (temp2>=0.0)
        den = mx2+my2+2.0*sqrt(temp2);
      else
        den = mx2+my2;
      obj2->prof_e1 = (mx2 - my2) / den;
      obj2->prof_e2 = 2.0*mxy / den;
      }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1741
    else
1742
      obj2->prof_pol1 = obj2->prof_pol2 = obj2->prof_e1 = obj2->prof_e2 = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1743
    }
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765

  if (FLAG(obj2.prof_cxx))
    {
    obj2->prof_cxx = (float)(my2/temp2);
    obj2->prof_cyy = (float)(mx2/temp2);
    obj2->prof_cxy = (float)(-2*mxy/temp2);
    }

  if (FLAG(obj2.prof_a))
    {
    if ((fabs(temp=mx2-my2)) > 0.0)
      theta = atan2(2.0 * mxy,temp) / 2.0;
    else
      theta = PI/4.0;

    temp = sqrt(0.25*temp*temp+mxy*mxy);
    pmx2 = 0.5*(mx2+my2);
    obj2->prof_a = (float)sqrt(pmx2 + temp);
    obj2->prof_b = (float)sqrt(pmx2 - temp);
    obj2->prof_theta = theta*180.0/PI;
    }

Emmanuel Bertin's avatar
Emmanuel Bertin committed
1766
1767
1768
1769
1770

  return;
  }


1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
/****** profit_surface ****************************************************
PROTO	void profit_surface(profitstruct *profit, obj2struct *obj2,
			double lostfluxfrac)
PURPOSE	Compute surface brightnesses from the unconvolved object model.
INPUT	Pointer to the profile-fitting structure,
	Pointer to obj2 structure,
	Fraction of total flux lost in model.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	21/09/2009
 ***/
void	 profit_surface(profitstruct *profit, obj2struct *obj2,
			double lostfluxfrac)
  {
   double	dsum,dhsum,dsumoff, dhval, frac, seff;
   float	*spix, *spixt;
   int		i, npix, neff;

  npix = profit->modnaxisn[0]*profit->modnaxisn[1];
/* Sort model pixel values */
  spix = NULL;				/* to avoid gcc -Wall warnings */
  QMEMCPY(profit->modpix, spix, float, npix);
  hmedian(spix, npix);
  obj2->peak_prof = spix[npix-1];

  if (FLAG(obj2.fluxeff_prof))
    {
/*-- Build a cumulative distribution */
    dsum = 0.0;
    spixt = spix;
    for (i=npix; i--;)
      dsum += (double)*(spixt++);
/*-- Find matching surface brightness */
    if (lostfluxfrac > 1.0)
      lostfluxfrac = 0.0;
    dhsum = 0.5 * dsum / (1.0-lostfluxfrac);
    dsum = lostfluxfrac * dsum / (1.0-lostfluxfrac);
    neff = 0;
    spixt = spix;
    for (i=npix; i--;)
      if ((dsum += (double)*(spixt++)) >= dhsum)
        {
        neff = i;
        break;
        }
    dhval = (double)*(spixt-1);
    seff = neff;
    dsumoff = 0.0;
    if (spixt>=spix+2)
      if (dhval > 0.0 && (frac = (dsum - dhsum) / dhval) < 1.0)
        {
        seff += frac;
        dsumoff = frac*dhval;
        dhval = dsumoff + (1.0 - frac)*(double)*(spixt-2);
        }
    obj2->fluxeff_prof = dhval;
    if (FLAG(obj2.fluxmean_prof))
      {
      dsum = dsumoff;
      for (i=neff; i--;)
        dsum += (double)*(spixt++);
      obj2->fluxmean_prof = seff > 0.0? dsum / seff : 0.0;
      }
    }

  free(spix);

  return;
  }


Emmanuel Bertin's avatar
Emmanuel Bertin committed
1843
1844
/****** profit_addparam *******************************************************
PROTO	void profit_addparam(profitstruct *profit, paramenum paramindex,
1845
		float **param)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1846
1847
1848
1849
1850
1851
1852
1853
1854
1855
PURPOSE	Add a profile parameter to the list of fitted items.
INPUT	Pointer to the profit structure,
	Parameter index,
	Pointer to the parameter pointer.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	29/03/2007
 ***/
void	profit_addparam(profitstruct *profit, paramenum paramindex,
1856
		float **param)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
1885
1886
  {
/* Check whether the parameter has already be registered */
  if (profit->paramlist[paramindex])
/*-- Yes */
    *param = profit->paramlist[paramindex];
  else
/*-- No */
    {
    *param = profit->paramlist[paramindex] = &profit->param[profit->nparam];
    profit->paramindex[paramindex] = profit->nparam++;
    }

  return;
  }


/****** profit_resetparam ****************************************************
PROTO	void profit_resetparam(profitstruct *profit, paramenum paramtype)
PURPOSE	Set the initial, lower and upper boundary values of a profile parameter.
INPUT	Pointer to the profit structure,
	Parameter index.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	25/09/2008
 ***/
void	profit_resetparam(profitstruct *profit, paramenum paramtype)
  {
   objstruct	*obj;
   obj2struct	*obj2;
1887
   float	param, parammin,parammax;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1888
1889
1890
1891

  obj = profit->obj;
  obj2 = profit->obj2;
  param = parammin = parammax = 0.0;	/* Avoid gcc -Wall warnings*/
1892

Emmanuel Bertin's avatar
Emmanuel Bertin committed
1893
1894
1895
1896
1897
1898
1899
1900
1901
1902
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
1933
1934
1935
1936
1937
1938
1939
1940
1941
  switch(paramtype)
    {
    case PARAM_BACK:
      param = 0.0;
      parammin = -6.0*obj->sigbkg;
      parammax =  6.0*obj->sigbkg;
      break;
    case PARAM_X:
      param = obj->mx - (int)(obj->mx+0.49999);
      parammin = -obj2->hl_radius*4;
      parammax =  obj2->hl_radius*4;
      break;
    case PARAM_Y:
      param = obj->my - (int)(obj->my+0.49999);
      parammin = -obj2->hl_radius*4;
      parammax =  obj2->hl_radius*4;
      break;
    case PARAM_SPHEROID_FLUX:
      param = obj2->flux_auto/2.0;
      parammin = -obj2->flux_auto/1000.0;
      parammax = 2*obj2->flux_auto;
      break;
    case PARAM_SPHEROID_REFF:
      param = obj2->hl_radius;
      parammin = 0.1;
      parammax = param * 4.0;
      break;
    case PARAM_SPHEROID_ASPECT:
      param = FLAG(obj2.prof_disk_flux)? 1.0 : obj->b/obj->a;
      parammin = FLAG(obj2.prof_disk_flux)? 0.5 : 0.01;
      parammax = 1.0;
      break;
    case PARAM_SPHEROID_POSANG:
      param = obj->theta;
      parammin = 0.0;
      parammax =  0.0;
      break;
    case PARAM_SPHEROID_SERSICN:
      param = 4.0;
      parammin = 1.0;
      parammax = 10.0;
      break;
    case PARAM_DISK_FLUX:
      param = obj2->flux_auto/2.0;
      parammin = -obj2->flux_auto/1000.0;
      parammax = 2*obj2->flux_auto;
      break;
    case PARAM_DISK_SCALE:	/* From scalelength to Re */
      param = obj2->hl_radius/1.67835*sqrt(obj->a/obj->b);
1942
      parammin = param/4.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1943
1944
1945
1946
1947
1948
1949
1950
1951
1952
1953
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
1983
1984
1985
1986
1987
1988
1989
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
      parammax = param * 4.0;
      break;
    case PARAM_DISK_ASPECT:
      param = obj->b/obj->a;
      parammin = 0.01;
      parammax = 1.0;
      break;
    case PARAM_DISK_POSANG:
      param = obj->theta;
      parammin = 0.0;
      parammax =  0.0;
      break;
    case PARAM_ARMS_FLUX:
      param = obj2->flux_auto/2.0;
      parammin = 0.0;
      parammax = obj2->flux_auto*2.0;
      break;
    case PARAM_ARMS_QUADFRAC:
      param = 0.5;
      parammin = 0.0;
      parammax = 1.0;
      break;
    case PARAM_ARMS_SCALE:
      param = 1.0;
      parammin = 0.5;
      parammax = 10.0;
      break;
    case PARAM_ARMS_START:
      param = 0.5;
      parammin = 0.0;
      parammax = 3.0;
      break;
    case PARAM_ARMS_PITCH:
      param = 20.0;
      parammin = 5.0;
      parammax = 50.0;
      break;
    case PARAM_ARMS_PITCHVAR:
      param = 0.0;
      parammin = -1.0;
      parammax = 1.0;
      break;
//      if ((profit->spirindex=profit_spiralindex(profit, obj, obj2)) > 0.0)
//        {
//        param = -param;
//        parammin = -parammax;
//        parammax = -parammin;
//        }
//      printf("spiral index: %g  \n", profit->spirindex);
//      break;
    case PARAM_ARMS_POSANG:
      param = 0.0;
      parammin = 0.0;
      parammax = 0.0;
      break;
    case PARAM_ARMS_WIDTH:
      param = 3.0;
      parammin = 1.5;
For faster browsing, not all history is shown. View entire blame