Loading ObservationSim/Astrometry/Astrometry_util.py +2 −1 Original line number Diff line number Diff line Loading @@ -111,7 +111,8 @@ def on_orbit_obs_position(input_ra_list, input_dec_list, input_pmra_list, input_ input_dec = c_double(input_dec_list[i]) input_pmra = c_double(input_pmra_list[i]) input_pmdec = c_double(input_pmdec_list[i]) input_rv = c_double(input_rv_list[i] * 3600.) # Convert from km/s to km/h # input_rv = c_double(input_rv_list[i] * 3600.) # Convert from km/s to km/h input_rv = c_double(input_rv_list[i]) input_parallax = c_double(input_parallax_list[i]) p3 = d3(input_x, input_y, input_z) v3 = d3(input_vx, input_vy, input_vz) Loading ObservationSim/Config/ChipOutput.py +7 −2 Original line number Diff line number Diff line Loading @@ -68,8 +68,13 @@ class ChipOutput(object): self.cat.write(self.hdr) def cat_add_obj(self, obj, pos_img, pos_shear): ximg = pos_img.x - self.chip.bound.xmin + 1.0 yimg = pos_img.y - self.chip.bound.ymin + 1.0 # ximg = pos_img.x - self.chip.bound.xmin + 1.0 # yimg = pos_img.y - self.chip.bound.ymin + 1.0 # print('-------------debug-----------------') # print('from global',ximg, yimg) ximg = obj.real_pos.x + 1.0 yimg = obj.real_pos.y + 1.0 # print('from loacl',ximg, yimg) line = self.fmt%( obj.id, int(self.chipLabel), self.filt.filter_type, ximg, yimg, obj.ra, obj.dec, obj.ra_orig, obj.dec_orig, obj.z, obj.getMagFilter(self.filt), obj.type, Loading ObservationSim/Config/Header/ImageHeader.py +71 −3 Original line number Diff line number Diff line Loading @@ -7,7 +7,7 @@ from astropy.io import fits import astropy.wcs as pywcs from collections import OrderedDict from scipy import math # from scipy import math import random import os Loading Loading @@ -87,6 +87,17 @@ def rotate_CD_matrix(cd, pa_aper): cd_rot = np.dot(mat, cd) return cd_rot def calcaluteSLSRotSkyCoor(pix_xy = None,rot_angle = 1, xlen = 9216, ylen = 9232, w = None): rad = np.deg2rad(rot_angle) mat = np.zeros((2,2)) mat[0,:] = np.array([np.cos(rad),-np.sin(rad)]) mat[1,:] = np.array([np.sin(rad),np.cos(rad)]) center = np.array([xlen/2, ylen/2]) rot_pix = np.dot(mat, pix_xy-center) + center skyCoor = w.wcs_pix2world(np.array([rot_pix]), 1) return skyCoor # def Header_extention(xlen = 9216, ylen = 9232, gain = 1.0, readout = 5.0, dark = 0.02,saturation=90000, row_num = 1, col_num = 1): # Loading Loading @@ -153,7 +164,7 @@ def rotate_CD_matrix(cd, pa_aper): ##9232 9216 898 534 1309 60 -40 -23.4333 def WCS_def(xlen = 9216, ylen = 9232, gapy = 898.0, gapx1 = 534, gapx2 = 1309, ra = 60, dec = -40, pa = -23.433,psize = 0.074, row_num = 1, col_num = 1): def WCS_def(xlen = 9216, ylen = 9232, gapy = 898.0, gapx1 = 534, gapx2 = 1309, ra = 60, dec = -40, pa = -23.433,psize = 0.074, row_num = 1, col_num = 1, filter = 'GI'): """ Creat a wcs frame for CCST with multiple extensions Loading Loading @@ -228,6 +239,63 @@ def WCS_def(xlen = 9216, ylen = 9232, gapy = 898.0, gapx1 = 534, gapx2 = 1309, r r_dat['CD1_2'] = cd_rot[0,1] r_dat['CD2_1'] = cd_rot[1,0] r_dat['CD2_2'] = cd_rot[1,1] if filter in ['GU', 'GV', 'GI']: from astropy import wcs w = wcs.WCS(naxis=2) w.wcs.crpix = [r_dat['CRPIX1'], r_dat['CRPIX2']] w.wcs.cd = cd_rot w.wcs.crval = [ra_ref, dec_ref] w.wcs.ctype = [r_dat['CTYPE1'], r_dat['CTYPE2']] # test_center_o = w.wcs_pix2world(np.array([[xlen / 2, ylen / 2]]), 1) sls_rot = 1 if i > 2: sls_rot = -sls_rot sn_x = 30 sn_y = 30 x_pixs = np.zeros(sn_y * sn_x) y_pixs = np.zeros(sn_y * sn_x) xpixs_line = np.linspace(1, xlen, sn_x) ypixs_line = np.linspace(1, ylen, sn_y) sky_coors = [] for n1, y in enumerate(ypixs_line): for n2, x in enumerate(xpixs_line): i_pix = n1 * sn_x + n2 x_pixs[i_pix] = x y_pixs[i_pix] = y pix_coor = np.array([x, y]) sc1 = calcaluteSLSRotSkyCoor(pix_xy=pix_coor, rot_angle=sls_rot, w=w) # print(sc1[0,0],sc1[0,1]) sky_coors.append((sc1[0, 0], sc1[0, 1])) from astropy.coordinates import SkyCoord from astropy.wcs.utils import fit_wcs_from_points wcs_new = fit_wcs_from_points(xy=np.array([x_pixs, y_pixs]), world_coords=SkyCoord(sky_coors, frame="icrs", unit="deg"), projection='TAN') # print(wcs_new) # test_center = wcs_new.wcs_pix2world(np.array([[xlen / 2, ylen / 2]]), 1) # # print(test_center - test_center_o) r_dat['CD1_1'] = wcs_new.wcs.cd[0, 0] r_dat['CD1_2'] = wcs_new.wcs.cd[0, 1] r_dat['CD2_1'] = wcs_new.wcs.cd[1, 0] r_dat['CD2_2'] = wcs_new.wcs.cd[1, 1] r_dat['CRPIX1'] = wcs_new.wcs.crpix[0] r_dat['CRPIX2'] = wcs_new.wcs.crpix[1] r_dat['CRVAL1'] = wcs_new.wcs.crval[0] r_dat['CRVAL2'] = wcs_new.wcs.crval[1] return r_dat Loading Loading @@ -347,7 +415,7 @@ def generateExtensionHeader(xlen = 9216, ylen = 9232,ra = 60, dec = -40, pa = -2 h_ext['CCDCHIP'] = 'ccd' + CCDID[k-1].rjust(2,'0') h_ext['POS_ANG'] = pa header_wcs = WCS_def(xlen=xlen, ylen=ylen, gapy=898.0, gapx1=534, gapx2=1309, ra=ra, dec=dec, pa=pa, psize=psize, row_num=row_num, col_num=col_num) row_num=row_num, col_num=col_num, filter = h_ext['FILTER']) h_ext['CRPIX1'] = header_wcs['CRPIX1'] h_ext['CRPIX2'] = header_wcs['CRPIX2'] Loading ObservationSim/Instrument/Chip/Chip.py +20 −1 Original line number Diff line number Diff line Loading @@ -82,6 +82,8 @@ class Chip(FocalPlane): else: self.sensor = galsim.Sensor() self.flat_cube = None # for spectroscopic flat field cube simulation # def _getChipRowCol(self): # self.rowID = (self.chipID - 1) // 5 + 1 # self.colID = (self.chipID - 1) % 5 + 1 Loading Loading @@ -719,7 +721,7 @@ class Chip(FocalPlane): if config["ins_effects"]["add_bias"] == True: biaslevel = self.bias_level overscan = biaslevel-2 elif config["ins_effects"]["add_bias"] == True: elif config["ins_effects"]["add_bias"] == False: biaslevel = 0 overscan = 0 for i in range(NDark): Loading Loading @@ -846,3 +848,20 @@ class Chip(FocalPlane): # sub_img.write("%s/%s_%s.fits" % (chip_output.subdir, img_name_root, rowcoltag)) # del sub_img return img def loadSLSFLATCUBE(self, flat_fn='flat_cube.fits'): from astropy.io import fits try: with pkg_resources.files('ObservationSim.Instrument.data').joinpath(flat_fn) as data_path: flat_fits = fits.open(data_path, ignore_missing_simple=True) except AttributeError: with pkg_resources.path('ObservationSim.Instrument.data', flat_fn) as data_path: flat_fits = fits.open(data_path, ignore_missing_simple=True) fl = len(flat_fits) fl_sh = flat_fits[0].data.shape assert fl == 4, 'FLAT Field Cube is Not 4 layess!!!!!!!' self.flat_cube = np.zeros([fl, fl_sh[0], fl_sh[1]]) for i in np.arange(0, fl, 1): self.flat_cube[i] = flat_fits[i].data ObservationSim/Instrument/data/flatCube/flat_cube.fits 0 → 100644 +2.54 GiB File added.No diff preview for this file type. View file Loading
ObservationSim/Astrometry/Astrometry_util.py +2 −1 Original line number Diff line number Diff line Loading @@ -111,7 +111,8 @@ def on_orbit_obs_position(input_ra_list, input_dec_list, input_pmra_list, input_ input_dec = c_double(input_dec_list[i]) input_pmra = c_double(input_pmra_list[i]) input_pmdec = c_double(input_pmdec_list[i]) input_rv = c_double(input_rv_list[i] * 3600.) # Convert from km/s to km/h # input_rv = c_double(input_rv_list[i] * 3600.) # Convert from km/s to km/h input_rv = c_double(input_rv_list[i]) input_parallax = c_double(input_parallax_list[i]) p3 = d3(input_x, input_y, input_z) v3 = d3(input_vx, input_vy, input_vz) Loading
ObservationSim/Config/ChipOutput.py +7 −2 Original line number Diff line number Diff line Loading @@ -68,8 +68,13 @@ class ChipOutput(object): self.cat.write(self.hdr) def cat_add_obj(self, obj, pos_img, pos_shear): ximg = pos_img.x - self.chip.bound.xmin + 1.0 yimg = pos_img.y - self.chip.bound.ymin + 1.0 # ximg = pos_img.x - self.chip.bound.xmin + 1.0 # yimg = pos_img.y - self.chip.bound.ymin + 1.0 # print('-------------debug-----------------') # print('from global',ximg, yimg) ximg = obj.real_pos.x + 1.0 yimg = obj.real_pos.y + 1.0 # print('from loacl',ximg, yimg) line = self.fmt%( obj.id, int(self.chipLabel), self.filt.filter_type, ximg, yimg, obj.ra, obj.dec, obj.ra_orig, obj.dec_orig, obj.z, obj.getMagFilter(self.filt), obj.type, Loading
ObservationSim/Config/Header/ImageHeader.py +71 −3 Original line number Diff line number Diff line Loading @@ -7,7 +7,7 @@ from astropy.io import fits import astropy.wcs as pywcs from collections import OrderedDict from scipy import math # from scipy import math import random import os Loading Loading @@ -87,6 +87,17 @@ def rotate_CD_matrix(cd, pa_aper): cd_rot = np.dot(mat, cd) return cd_rot def calcaluteSLSRotSkyCoor(pix_xy = None,rot_angle = 1, xlen = 9216, ylen = 9232, w = None): rad = np.deg2rad(rot_angle) mat = np.zeros((2,2)) mat[0,:] = np.array([np.cos(rad),-np.sin(rad)]) mat[1,:] = np.array([np.sin(rad),np.cos(rad)]) center = np.array([xlen/2, ylen/2]) rot_pix = np.dot(mat, pix_xy-center) + center skyCoor = w.wcs_pix2world(np.array([rot_pix]), 1) return skyCoor # def Header_extention(xlen = 9216, ylen = 9232, gain = 1.0, readout = 5.0, dark = 0.02,saturation=90000, row_num = 1, col_num = 1): # Loading Loading @@ -153,7 +164,7 @@ def rotate_CD_matrix(cd, pa_aper): ##9232 9216 898 534 1309 60 -40 -23.4333 def WCS_def(xlen = 9216, ylen = 9232, gapy = 898.0, gapx1 = 534, gapx2 = 1309, ra = 60, dec = -40, pa = -23.433,psize = 0.074, row_num = 1, col_num = 1): def WCS_def(xlen = 9216, ylen = 9232, gapy = 898.0, gapx1 = 534, gapx2 = 1309, ra = 60, dec = -40, pa = -23.433,psize = 0.074, row_num = 1, col_num = 1, filter = 'GI'): """ Creat a wcs frame for CCST with multiple extensions Loading Loading @@ -228,6 +239,63 @@ def WCS_def(xlen = 9216, ylen = 9232, gapy = 898.0, gapx1 = 534, gapx2 = 1309, r r_dat['CD1_2'] = cd_rot[0,1] r_dat['CD2_1'] = cd_rot[1,0] r_dat['CD2_2'] = cd_rot[1,1] if filter in ['GU', 'GV', 'GI']: from astropy import wcs w = wcs.WCS(naxis=2) w.wcs.crpix = [r_dat['CRPIX1'], r_dat['CRPIX2']] w.wcs.cd = cd_rot w.wcs.crval = [ra_ref, dec_ref] w.wcs.ctype = [r_dat['CTYPE1'], r_dat['CTYPE2']] # test_center_o = w.wcs_pix2world(np.array([[xlen / 2, ylen / 2]]), 1) sls_rot = 1 if i > 2: sls_rot = -sls_rot sn_x = 30 sn_y = 30 x_pixs = np.zeros(sn_y * sn_x) y_pixs = np.zeros(sn_y * sn_x) xpixs_line = np.linspace(1, xlen, sn_x) ypixs_line = np.linspace(1, ylen, sn_y) sky_coors = [] for n1, y in enumerate(ypixs_line): for n2, x in enumerate(xpixs_line): i_pix = n1 * sn_x + n2 x_pixs[i_pix] = x y_pixs[i_pix] = y pix_coor = np.array([x, y]) sc1 = calcaluteSLSRotSkyCoor(pix_xy=pix_coor, rot_angle=sls_rot, w=w) # print(sc1[0,0],sc1[0,1]) sky_coors.append((sc1[0, 0], sc1[0, 1])) from astropy.coordinates import SkyCoord from astropy.wcs.utils import fit_wcs_from_points wcs_new = fit_wcs_from_points(xy=np.array([x_pixs, y_pixs]), world_coords=SkyCoord(sky_coors, frame="icrs", unit="deg"), projection='TAN') # print(wcs_new) # test_center = wcs_new.wcs_pix2world(np.array([[xlen / 2, ylen / 2]]), 1) # # print(test_center - test_center_o) r_dat['CD1_1'] = wcs_new.wcs.cd[0, 0] r_dat['CD1_2'] = wcs_new.wcs.cd[0, 1] r_dat['CD2_1'] = wcs_new.wcs.cd[1, 0] r_dat['CD2_2'] = wcs_new.wcs.cd[1, 1] r_dat['CRPIX1'] = wcs_new.wcs.crpix[0] r_dat['CRPIX2'] = wcs_new.wcs.crpix[1] r_dat['CRVAL1'] = wcs_new.wcs.crval[0] r_dat['CRVAL2'] = wcs_new.wcs.crval[1] return r_dat Loading Loading @@ -347,7 +415,7 @@ def generateExtensionHeader(xlen = 9216, ylen = 9232,ra = 60, dec = -40, pa = -2 h_ext['CCDCHIP'] = 'ccd' + CCDID[k-1].rjust(2,'0') h_ext['POS_ANG'] = pa header_wcs = WCS_def(xlen=xlen, ylen=ylen, gapy=898.0, gapx1=534, gapx2=1309, ra=ra, dec=dec, pa=pa, psize=psize, row_num=row_num, col_num=col_num) row_num=row_num, col_num=col_num, filter = h_ext['FILTER']) h_ext['CRPIX1'] = header_wcs['CRPIX1'] h_ext['CRPIX2'] = header_wcs['CRPIX2'] Loading
ObservationSim/Instrument/Chip/Chip.py +20 −1 Original line number Diff line number Diff line Loading @@ -82,6 +82,8 @@ class Chip(FocalPlane): else: self.sensor = galsim.Sensor() self.flat_cube = None # for spectroscopic flat field cube simulation # def _getChipRowCol(self): # self.rowID = (self.chipID - 1) // 5 + 1 # self.colID = (self.chipID - 1) % 5 + 1 Loading Loading @@ -719,7 +721,7 @@ class Chip(FocalPlane): if config["ins_effects"]["add_bias"] == True: biaslevel = self.bias_level overscan = biaslevel-2 elif config["ins_effects"]["add_bias"] == True: elif config["ins_effects"]["add_bias"] == False: biaslevel = 0 overscan = 0 for i in range(NDark): Loading Loading @@ -846,3 +848,20 @@ class Chip(FocalPlane): # sub_img.write("%s/%s_%s.fits" % (chip_output.subdir, img_name_root, rowcoltag)) # del sub_img return img def loadSLSFLATCUBE(self, flat_fn='flat_cube.fits'): from astropy.io import fits try: with pkg_resources.files('ObservationSim.Instrument.data').joinpath(flat_fn) as data_path: flat_fits = fits.open(data_path, ignore_missing_simple=True) except AttributeError: with pkg_resources.path('ObservationSim.Instrument.data', flat_fn) as data_path: flat_fits = fits.open(data_path, ignore_missing_simple=True) fl = len(flat_fits) fl_sh = flat_fits[0].data.shape assert fl == 4, 'FLAT Field Cube is Not 4 layess!!!!!!!' self.flat_cube = np.zeros([fl, fl_sh[0], fl_sh[1]]) for i in np.arange(0, fl, 1): self.flat_cube[i] = flat_fits[i].data
ObservationSim/Instrument/data/flatCube/flat_cube.fits 0 → 100644 +2.54 GiB File added.No diff preview for this file type. View file