add calibration object

ObservationSim/MockObject/MockObject.py

@@ -26,6 +26,11 @@ class MockObject(object):
         elif self.param["star"] == 3:
             self.type = "stamp"
         ###mock_stamp_END
+        ###for calibration
+        elif self.param["star"] == 4:
+            self.type = "calib"
+        ###END
+
         self.sed = None
         self.fd_shear = None
         # Place holder for outputs

config/config_C6_dev_calib.yaml

+---
+###############################################
+#
+#  Configuration file for CSST simulation
+#  CSST-Sim Group, 2023/04/25
+#
+###############################################
+
+# Base diretories and naming setup
+# Can add some of the command-line arguments here as well;
+# OK to pass either way or both, as long as they are consistent
+work_dir: "/Users/zhangxin/Work/SlitlessSim/CSST_SIM/CSST_new_sim/csst-simulation/"
+data_dir: "/Volumes/EAGET/C6_data/inputData/"
+run_name: "C6_new_sim_2sq_run2"
+project_cycle: 6
+run_counter: 1
+
+# Whether to use MPI
+run_option:
+  use_mpi: NO
+  # NOTE: "n_threads" paramters is currently not used in the backend
+  # simulation codes. It should be implemented later in the web frontend
+  # in order to config the number of threads to request from NAOC cluster
+  n_threads: 80
+
+  # Output catalog only?
+  # If yes, no imaging simulation will run
+  out_cat_only: NO
+
+###############################################
+# Catalog setting
+###############################################
+# Configure your catalog: options to be implemented 
+# in the corresponding (user defined) 'Catalog' class
+catalog_options:
+  input_path:
+    cat_dir: "Catalog_C6_20221212"
+    star_cat:
+    galaxy_cat:
+    AGN_cat: "AGN_C6_ross13_rand_pos_rmax-1.3.fits"
+    CALIB_cat: "calibration_data/GP/calibrationCat_CHIP1_GI.fits"
+
+  SED_templates_path:
+    star_SED: "Catalog_20210126/SpecLib.hdf5"
+    galaxy_SED: "Catalog_C6_20221212/sedlibs/"
+    AGN_SED: "quickspeclib_ross13.fits"
+    AGN_SED_WAVE: "wave_ross13.npy"
+    CALIB_SED: "calibration_data/GP/GPTable/"
+
+  # Only simulate stars?
+  star_only: NO
+
+  # Only simulate galaxies?
+  galaxy_only: NO
+
+  # rotate galaxy ellipticity
+  rotateEll: 0. # [degree]
+
+  seed_Av: 121212    # Seed for generating random intrinsic extinction
+
+###############################################
+# Observation setting
+###############################################
+obs_setting:
+
+  # Options for survey types:
+  # "Photometric": simulate photometric chips only
+  # "Spectroscopic": simulate slitless spectroscopic chips only
+  # "FGS": simulate FGS chips only (31-42)
+  # "All": simulate full focal plane
+  # "CALIBRATION": falt, bias, dark with or without postflash
+  survey_type: "Spectroscopic"
+  #"LED": ['LED1','LED2','LED3','LED4','LED5','LED6','LED7','LED8','LED9','LED10','LED11','LED12','LED13','LED14'] or null
+  #'LED1': '275', 'LED2': '310', 'LED3': '430', 'LED4': '505', 'LED5': '545', 'LED6': '590', 'LED7': '670',
+  #'LED8': '760', 'LED9': '940', 'LED10': '940', 'LED11': '1050', 'LED12': '1050','LED13': '340', 'LED14': '365'
+  LED_TYPE: ['LED5','LED3']
+  LED_TIME: [1.,0.1]
+  # unit e- ,flat level
+  FLAT_LEVEL: 20000
+  FLAT_LEVEL_FIL: 'g'
+  
+  # Exposure time [seconds]
+  exp_time: 150.
+
+  # Observation starting date & time
+  date_obs: "210525" # [yymmdd]
+  time_obs: "120000" # [hhmmss]
+
+  # Default Pointing [degrees]
+  # Note: NOT valid when a pointing list file is specified
+  ra_center: 192.8595
+  dec_center:  27.1283
+  # Image rotation [degree]
+  image_rot: -113.4333
+
+  # (Optional) a file of point list 
+  # if you just want to run default pointing:
+  # - pointing_dir: null
+  # - pointing_file: null
+  pointing_dir: "/Volumes/EAGET/C6_data/inputData/"
+  pointing_file: "pointing_radec_246.5_40.dat"
+
+  # Number of calibration pointings
+  np_cal: 0
+
+  # Run specific pointing(s):
+  # - give a list of indexes of pointings: [ip_1, ip_2...]
+  # - run all pointings: null
+  # Note: only valid when a pointing list is specified
+  run_pointings: [0]
+  
+  # Run specific chip(s):
+  # - give a list of indexes of chips: [ip_1, ip_2...]
+  # - run all chips: null
+  # Note: for all pointings
+  run_chips: [1]
+
+  # Whether to enable astrometric modeling
+  enable_astrometric_model: False
+
+  # Whether to enable straylight model
+  enable_straylight_model: False
+
+  # Cut by saturation magnitude in which band?
+  cut_in_band: "z"
+
+  # saturation magnitude margin
+  # mag_sat_margin: -2.5
+  mag_sat_margin: -15.
+
+  # limiting magnitude margin
+  mag_lim_margin: +1.0
+
+###############################################
+# PSF setting
+###############################################
+psf_setting:
+  
+  # Which PSF model to use:
+  # "Gauss": simple gaussian profile
+  # "Interp": Interpolated PSF from sampled ray-tracing data
+  psf_model: "Gauss"
+
+  # PSF size [arcseconds]
+  # radius of 80% energy encircled
+  # NOTE: only valid for "Gauss" PSF
+  psf_rcont: 0.15
+
+  # path to PSF data
+  # NOTE: only valid for "Interp" PSF
+  psf_dir: "/share/simudata/CSSOSDataProductsSims/data/psfCube1"
+  psf_sls_dir: "/share/simudata/CSSOSDataProductsSims/data/SLS_PSF_PCA_fp/"
+###############################################
+# Shear setting
+###############################################
+
+shear_setting:
+  # Options to generate mock shear field:
+  # "constant": all galaxies are assigned a constant reduced shear
+  # "catalog": from catalog
+  shear_type: "catalog"
+
+  # For constant shear filed
+  reduced_g1: 0.
+  reduced_g2: 0.
+
+###############################################
+# Instrumental effects setting
+###############################################
+ins_effects:
+  # switches
+  # Note: bias_16channel, gain_16channel, and shutter_effect
+  # is currently not applicable to "FGS" observations
+  field_dist:     NO  # Whether to add field distortions
+  add_back:       YES  # Whether to add sky background
+  add_dark:       YES  # Whether to add dark noise
+  add_readout:    YES  # Whether to add read-out (Gaussian) noise
+  add_bias:       YES  # Whether to add bias-level to images
+  add_prescan:    OFF
+  bias_16channel: YES  # Whether to add different biases for 16 channels
+  gain_16channel: YES  # Whether to make different gains for 16 channels
+  shutter_effect: YES  # Whether to add shutter effect
+  flat_fielding:  YES  # Whether to add flat-fielding effect
+  prnu_effect:    YES  # Whether to add PRNU effect
+  non_linear:     YES  # Whether to add non-linearity
+  cosmic_ray:     NO  # Whether to add cosmic-ray
+  cray_differ:    NO  # Whether to generate different cosmic ray maps CAL and MS output
+  cte_trail:      YES  # Whether to simulate CTE trails
+  saturbloom:     YES  # Whether to simulate Saturation & Blooming
+  add_badcolumns: YES  # Whether to add bad columns
+  add_hotpixels:  YES  # Whether to add hot pixels
+  add_deadpixels: YES  # Whether to add dead(dark) pixels
+  bright_fatter:  YES  # Whether to simulate Brighter-Fatter (also diffusion) effect
+  format_output:  OFF
+
+  # Values: 
+  # default values have been defined individually for each chip in:
+  # ObservationSim/Instrument/data/ccd/chip_definition.json
+  # Set them here will override the default values
+  # dark_exptime:   300   # Exposure time for dark current frames [seconds]
+  # flat_exptime:   150   # Exposure time for flat-fielding frames [seconds]
+  # readout_time:   40    # The read-out time for each channel [seconds]
+  # df_strength:    2.3   # Sillicon sensor diffusion strength
+  # bias_level:     500   # bias level [e-/pixel]
+  # gain:           1.1   # Gain
+  # full_well:      90000 # Full well depth [e-]
+
+###############################################
+# Output options (for calibration pointings only)
+###############################################
+output_setting:
+  readout16:      OFF # Whether to export as 16 channels (subimages) with pre- and over-scan
+  shutter_output: OFF # Whether to export shutter effect 16-bit image
+  bias_output:    ON  # Whether to export bias frames
+  dark_output:    ON  # Whether to export the combined dark current files
+  flat_output:    ON  # Whether to export the combined flat-fielding files
+  prnu_output:    OFF # Whether to export the PRNU (pixel-to-pixel flat-fielding) files
+  NBias:          1     # Number of bias frames to be exported for each exposure
+  NDark:          1     # Number of dark frames to be exported for each exposure
+  NFlat:          1     # Number of flat frames to be exported for each exposure
+
+###############################################
+# Random seeds
+###############################################
+random_seeds:
+  seed_poisson:         20210601  # Seed for Poisson noise
+  seed_CR:              20210317  # Seed for generating random cosmic ray maps
+  seed_flat:            20210101  # Seed for generating random flat fields
+  seed_prnu:            20210102  # Seed for photo-response non-uniformity
+  seed_gainNonUniform:  20210202  # Seed for gain nonuniformity
+  seed_biasNonUniform:  20210203  # Seed for bias nonuniformity
+  seed_rnNonUniform:    20210204  # Seed for readout-noise nonuniformity
+  seed_badcolumns:      20240309  # Seed for bad columns
+  seed_defective:       20210304  # Seed for defective (bad) pixels
+  seed_readout:         20210601  # Seed for read-out gaussian noise
+...