1. new C6_50sqdeg.py catalog added. 2. change 'nuv' to 'NUV'

ObservationSim/Instrument/Chip/Chip.py

@@ -147,18 +147,18 @@ class Chip(FocalPlane):
     def _getSurveyType(self):
         if self.filter_type in ["GI", "GV", "GU"]:
             return "spectroscopic"
-        elif self.filter_type in ["nuv", "u", "g", 'r', 'i', 'z', 'y', 'FGS']:
+        elif self.filter_type in ["NUV", "u", "g", 'r', 'i', 'z', 'y', 'FGS']:
             return "photometric"
         # elif self.filter_type in ["FGS"]:
         #     return "FGS"
 
     def _getChipEffCurve(self, filter_type):
         # CCD efficiency curves
-        if filter_type in ['nuv', 'u', 'GU']: filename = 'UV0.txt'
+        if filter_type in ['NUV', 'u', 'GU']: filename = 'UV0.txt'
         if filter_type in ['g', 'r', 'GV', 'FGS']: filename = 'Astro_MB.txt' # TODO, need to switch to the right efficiency curvey for FGS CMOS
         if filter_type in ['i', 'z', 'y', 'GI']: filename = 'Basic_NIR.txt'
         # Mirror efficiency:
-        # if filter_type == 'nuv': mirror_eff = 0.54
+        # if filter_type == 'NUV': mirror_eff = 0.54
         # if filter_type == 'u': mirror_eff = 0.68
         # if filter_type in ['g', 'r', 'i', 'z', 'y']: mirror_eff = 0.8
         # if filter_type in ['GU', 'GV', 'GI']: mirror_eff = 1. # Not sure if this is right
@@ -185,7 +185,7 @@ class Chip(FocalPlane):
     def getChipFilter(self, chipID=None, filter_layout=None):
         """Return the filter index and type for a given chip #(chipID)
         """
-        filter_type_list = ["nuv","u", "g", "r", "i","z","y","GU", "GV", "GI", "FGS"]
+        filter_type_list = ["NUV","u", "g", "r", "i","z","y","GU", "GV", "GI", "FGS"]
         if filter_layout is not None:
             return filter_layout[chipID][0], filter_layout[chipID][1]
         if chipID == None:
@@ -198,7 +198,7 @@ class Chip(FocalPlane):
         if chipID in [7, 24]:          filter_type = "i"
         if chipID in [14, 17]:         filter_type = "u"
         if chipID in [9, 22]:          filter_type = "r"
-        if chipID in [12, 13, 18, 19]: filter_type = "nuv"
+        if chipID in [12, 13, 18, 19]: filter_type = "NUV"
         if chipID in [8, 23]:          filter_type = "g"
         if chipID in [1, 10, 21, 30]:  filter_type = "GI"
         if chipID in [2, 5, 26, 29]:   filter_type = "GV"

ObservationSim/Instrument/FilterParam.py

@@ -26,7 +26,7 @@ class FilterParam(object):
         # 8) dim end magnitude
         if filter_param == None:
             filtP = {
-                    "nuv":   [2867.7,   705.4,  2470.0,   3270.0,  0.1404, 0.004, 15.7, 25.4],
+                    "NUV":   [2867.7,   705.4,  2470.0,   3270.0,  0.1404, 0.004, 15.7, 25.4],
                     "u":     [3601.1,   852.1,  3120.0,   4090.0,  0.2176, 0.021, 16.1, 25.4],
                     "g":     [4754.5,  1569.8,  3900.0,   5620.0,  0.4640, 0.164, 17.2, 26.3],
                     "r":     [6199.8,  1481.2,  5370.0,   7030.0,  0.5040, 0.207, 17.0, 26.0],

config/config_50sqdeg.yaml

+---
+###############################################
+#
+#  Configuration file for CSST simulation
+#  CSST-Sim Group, 2023/04/25
+#
+###############################################
+
+# Base diretories and naming setup
+# Can add some of the command-line arguments here as well;
+# OK to pass either way or both, as long as they are consistent
+work_dir: "/share/home/fangyuedong/csst-simulation/workplace/"
+data_dir: "/share/simudata/CSSOSDataProductsSims/data/"
+run_name: "50sqdeg_test"
+
+# Whether to use MPI
+run_option:
+  use_mpi: NO
+  # NOTE: "n_threads" paramters is currently not used in the backend
+  # simulation codes. It should be implemented later in the web frontend
+  # in order to config the number of threads to request from NAOC cluster
+  n_threads: 80
+
+  # Output catalog only?
+  # If yes, no imaging simulation will run
+  out_cat_only: NO
+
+###############################################
+# Catalog setting
+###############################################
+# Configure your catalog: options to be implemented 
+# in the corresponding (user defined) 'Catalog' class
+catalog_options:
+  input_path:
+    cat_dir: ""
+    # star_cat: "C6_MMW_GGC_Astrometry_healpix.hdf5"
+    star_cat: "starcat/"
+    galaxy_cat: "qsocat/cat2CSSTSim_bundle-50sqDeg/"
+    # AGN_cat: "AGN_C6_ross13_rand_pos_rmax-1.3.fits"
+
+  SED_templates_path:
+    star_SED: "Catalog_20210126/SpecLib.hdf5"
+    galaxy_SED: "Catalog_C6_20221212/sedlibs/"
+    AGN_SED: "qsocat/qsosed/"
+    # AGN_SED_WAVE: "wave_ross13.npy"
+
+  # Only simulate stars?
+  star_only: NO
+
+  # Only simulate galaxies?
+  galaxy_only: NO
+
+  # rotate galaxy ellipticity
+  rotateEll: 0. # [degree]
+
+  seed_Av: 121212    # Seed for generating random intrinsic extinction
+
+###############################################
+# Observation setting
+###############################################
+obs_setting:
+
+  # Options for survey types:
+  # "Photometric": simulate photometric chips only
+  # "Spectroscopic": simulate slitless spectroscopic chips only
+  # "FGS": simulate FGS chips only (31-42)
+  # "All": simulate full focal plane
+  survey_type: "Photometric"
+  
+  # Exposure time [seconds]
+  exp_time: 150.
+
+  # Observation starting date & time
+  date_obs: "210525" # [yymmdd]
+  time_obs: "120000" # [hhmmss]
+
+  # Default Pointing [degrees]
+  # Note: NOT valid when a pointing list file is specified
+  ra_center: 192.8595
+  dec_center:  27.1283
+  # Image rotation [degree]
+  image_rot: -113.4333
+
+  # (Optional) a file of point list 
+  # if you just want to run default pointing:
+  # - pointing_dir: null
+  # - pointing_file: null
+  pointing_dir: "/share/home/fangyuedong/50sqdeg_pointings/"
+  pointing_file: "pointing_50_combined.dat"
+
+  # Number of calibration pointings
+  np_cal: 0
+
+  # Run specific pointing(s):
+  # - give a list of indexes of pointings: [ip_1, ip_2...]
+  # - run all pointings: null
+  # Note: only valid when a pointing list is specified
+  run_pointings: [0]
+  
+  # Run specific chip(s):
+  # - give a list of indexes of chips: [ip_1, ip_2...]
+  # - run all chips: null
+  # Note: for all pointings
+  run_chips: [8]
+
+  # Whether to enable astrometric modeling
+  enable_astrometric_model: True
+
+  # Whether to enable straylight model
+  enable_straylight_model: True
+
+  # Cut by saturation magnitude in which band?
+  cut_in_band: "z"
+
+  # saturation magnitude margin
+  mag_sat_margin: -2.5
+
+  # limiting magnitude margin
+  mag_lim_margin: +1.0
+
+###############################################
+# PSF setting
+###############################################
+psf_setting:
+  
+  # Which PSF model to use:
+  # "Gauss": simple gaussian profile
+  # "Interp": Interpolated PSF from sampled ray-tracing data
+  psf_model: "Interp"
+
+  # PSF size [arcseconds]
+  # radius of 80% energy encircled
+  # NOTE: only valid for "Gauss" PSF
+  psf_rcont: 0.15
+
+  # path to PSF data
+  # NOTE: only valid for "Interp" PSF
+  psf_dir: "/share/simudata/CSSOSDataProductsSims/data/psfCube1"
+
+###############################################
+# Shear setting
+###############################################
+
+shear_setting:
+  # Options to generate mock shear field:
+  # "constant": all galaxies are assigned a constant reduced shear
+  # "catalog": from catalog
+  shear_type: "catalog"
+
+  # For constant shear filed
+  reduced_g1: 0.
+  reduced_g2: 0.
+
+###############################################
+# Instrumental effects setting
+###############################################
+ins_effects:
+  # switches
+  # Note: bias_16channel, gain_16channel, and shutter_effect
+  # is currently not applicable to "FGS" observations
+  field_dist:     ON  # Whether to add field distortions
+  add_back:       ON  # Whether to add sky background
+  add_dark:       ON  # Whether to add dark noise
+  add_readout:    ON  # Whether to add read-out (Gaussian) noise
+  add_bias:       ON  # Whether to add bias-level to images
+  bias_16channel: OFF  # Whether to add different biases for 16 channels
+  gain_16channel: OFF  # Whether to make different gains for 16 channels
+  shutter_effect: OFF  # Whether to add shutter effect
+  flat_fielding:  OFF  # Whether to add flat-fielding effect
+  prnu_effect:    OFF  # Whether to add PRNU effect
+  non_linear:     OFF  # Whether to add non-linearity
+  cosmic_ray:     OFF  # Whether to add cosmic-ray
+  cray_differ:    OFF  # Whether to generate different cosmic ray maps CAL and MS output
+  cte_trail:      OFF  # Whether to simulate CTE trails
+  saturbloom:     OFF  # Whether to simulate Saturation & Blooming
+  add_badcolumns: OFF  # Whether to add bad columns
+  add_hotpixels:  OFF  # Whether to add hot pixels
+  add_deadpixels: OFF  # Whether to add dead(dark) pixels
+  bright_fatter:  OFF  # Whether to simulate Brighter-Fatter (also diffusion) effect
+
+  # Values: 
+  # default values have been defined individually for each chip in:
+  # ObservationSim/Instrument/data/ccd/chip_definition.json
+  # Set them here will override the default values
+  # dark_exptime:   300   # Exposure time for dark current frames [seconds]
+  # flat_exptime:   150   # Exposure time for flat-fielding frames [seconds]
+  # readout_time:   40    # The read-out time for each channel [seconds]
+  # df_strength:    2.3   # Sillicon sensor diffusion strength
+  # bias_level:     500   # bias level [e-/pixel]
+  # gain:           1.1   # Gain
+  # full_well:      90000 # Full well depth [e-]
+
+###############################################
+# Output options (for calibration pointings only)
+###############################################
+output_setting:
+  readout16:      OFF # Whether to export as 16 channels (subimages) with pre- and over-scan
+  shutter_output: OFF # Whether to export shutter effect 16-bit image
+  bias_output:    ON  # Whether to export bias frames
+  dark_output:    ON  # Whether to export the combined dark current files
+  flat_output:    ON  # Whether to export the combined flat-fielding files
+  prnu_output:    OFF # Whether to export the PRNU (pixel-to-pixel flat-fielding) files
+  NBias:          1     # Number of bias frames to be exported for each exposure
+  NDark:          1     # Number of dark frames to be exported for each exposure
+  NFlat:          1     # Number of flat frames to be exported for each exposure
+
+###############################################
+# Random seeds
+###############################################
+random_seeds:
+  seed_poisson:         20210601  # Seed for Poisson noise
+  seed_CR:              20210317  # Seed for generating random cosmic ray maps
+  seed_flat:            20210101  # Seed for generating random flat fields
+  seed_prnu:            20210102  # Seed for photo-response non-uniformity
+  seed_gainNonUniform:  20210202  # Seed for gain nonuniformity
+  seed_biasNonUniform:  20210203  # Seed for bias nonuniformity
+  seed_rnNonUniform:    20210204  # Seed for readout-noise nonuniformity
+  seed_badcolumns:      20240309  # Seed for bad columns
+  seed_defective:       20210304  # Seed for defective (bad) pixels
+  seed_readout:         20210601  # Seed for read-out gaussian noise
+...
\ No newline at end of file

profile_C6.sh

@@ -3,9 +3,14 @@
 date
 
 python -m cProfile -o C6_profiler_test.pstats /share/home/fangyuedong/csst-simulation/run_sim.py \
-    --config_file config_C6.yaml \
-    --catalog C6_Catalog \
+    --config_file config_50sqdeg.yaml \
+    --catalog C6_50sqdeg \
     -c /share/home/fangyuedong/csst-simulation/config
+
+    # --config_file config_C6.yaml \
+    # --catalog C6_Catalog \
+    # -c /share/home/fangyuedong/csst-simulation/config
+
     # --config_file test_fd_C6.yaml \
     # --catalog fd_test_C6 \
     # --config_file config_C6_test_wcs.yaml \