deprecated files deleted

import os

import numpy as np

from Config import ReadConfig

from datetime import datetime

work_dir = "/public/home/fangyuedong/test/CSST/test/"

data_dir = "/data/simudata/CSSOSDataProductsSims/data/"

config_file = os.path.join(work_dir, "ObservationSim.cfg")

config = ReadConfig(config_file)

exp_time = float(config['exp_time'])

# Read Pointing list

pointing_file = os.path.join(data_dir, "pointing10_20210202.dat")

f = open(pointing_file, 'r')

for _ in range(1):

    header = f.readline()

iline = 0

pRA = []

pDEC = []

for line in f:

    line = line.strip()

    columns = line.split()

    pRA.append(float(columns[0]))

    pDEC.append(float(columns[1]))

f.close()

pRA = np.array(pRA)

pDEC = np.array(pDEC)

# Create calibration pointings

ncal = 1 # Define the number of calibration pointings

pointing_type = ['MS']*len(pRA)

pRA = np.append(pRA[:ncal], pRA)

pDEC = np.append(pDEC[:ncal], pDEC)

pointing_type = ['CAL']*ncal + pointing_type

# Calculate starting time(s)

t0 = datetime(2021, 5, 25, 12, 0, 0)

t = datetime.timestamp(t0)

timestamp_obs = []

delta_t = 10 # Time elapsed between exposures (minutes)

for i in range(len(pointing_type)):

    timestamp_obs.append(t)

    if pointing_type[i] == 'CAL':

        t += 3 * delta_t * 60 # 3 calibration exposure

    elif pointing_type[i] == 'MS':

        t += delta_t * 60

timestamp_obs = np.array(timestamp_obs)

pointing_type = np.array(pointing_type)

# Define the range of pointing list

# pRange = range(0, 2)

pRange = [1, 22]

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import os

import numpy as np

from Pointing import *

# Make directories

imgDir = os.path.join(work_dir, config["mockImgDir"])

if not os.path.exists(imgDir):

    os.system("mkdir %s"%imgDir)

prefix = "MSC_"

for pointing_ID in range(len(pRA)):

    if pointing_ID not in pRange:

        continue

    fname = prefix + str(pointing_ID).rjust(7, '0')

    subImgDir = os.path.join(imgDir, fname)

    if not os.path.exists(subImgDir):

        os.system("mkdir %s"%subImgDir)

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import yaml

if __name__ == '__main__':

    stream = open("config_sim.yaml", 'r')

    # dictionary = yaml.load(stream)

    dictionary = yaml.load(stream, Loader=yaml.SafeLoader)

    # print(dictionary)

    for key, value in dictionary.items():

        print (key + " : " + str(value))

    with open("config_sim.yaml", "r") as stream:

        try:

            dictionary = yaml.safe_load(stream)

            for key, value in dictionary.items():

                print (key + " : " + str(value))

        except yaml.YAMLError as exc:

            print(exc)

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##################################################

#  Default configuration for CSSOS simulation    #

#     CSST-Sim Group, 2021/01/04, version 0.2    #

#                                                #

##################################################

# Observation setting

date_obs      210525                  # Observation date [yymmdd]

time_obs      120000                  # Observation time [hhmmss]

exp_time      150.                    # Exposure time [seconds]

ra_center     60.0                    # Telesscope pointing center [degree] (Default)

dec_center   -40.0                     

psf_rcont     0.15,0.8                # Radius of the 80% flux concentration (for a Gaussian PSF)

image_rot    -113.4333                # Image orientation [degree]

sigma_spin    0.0                     # Image spin [degree]

rotateEll     0.0                     # Rotate the intrinsic ellipticity by a given angle  

                                      # (currently only support 0.0, 45.0, 90.0, 135.0 [degree])

survey_type   Photometric             # Survey simulation option:

                                      # 'Photometric': only run sims for photometric chips

                                      # 'Spectroscopic': only run sims for spectroscopic chps

                                      # 'All': run sims for all chips

psf_model     Interp                  # Which PSF model to use:

                                      # 'Gauss': simple gaussin profile

                                      # 'Interp': Interpolated PSF from measured data 

#===========================================================

# Instrument effects

#===========================================================

field_dist       y                    # Y/N: Whether to add field distortion

add_back         y                    # Y/N: Whether to add sky background

add_dark         y                    # Y/N: Whether to add dark noise

add_readout      y                    # Y/N: Whether to add read-out (Gaussian) noise

add_bias         y                    # Y/N: Whether to add bias-level to image

shutter_effect   y                    # Y/N: Whether to apply shutter effect

shutter_output   n                    # Y/N: Whether to export shutter effect 16-bit image (<=65535)

flat_fielding    y                    # Y/N: Whether to add flat-fielding effect

bias_output      y                    # Y/N: Whether to export bias frames

dark_output      y                    # Y/N: Whether to export the combined dark current file

flat_output      y                    # Y/N: Whether to export the combined flat-field file

prnu_effect      y                    # Y/N: Whether to apply PRNU effect

prnu_output      n                    # Y/N: Whether to export the PRNU (pixel-to-pixel flat-fielding) file

non_linear       n                    # Y/N: Whether to apply non-linearity

cosmic_ray       y                    # Y/N: Whether to add cosmic-ray

cray_differ      y                    # Y/N: Different cosmic-ray for calibration files or not

cte_trail        y                    # Y/N: Whether to simulate CTE trails

saturbloom       y                    # Y/N: Whether to simulate Saturation and Blooming

add_badcolumns   y                    # Y/N: Whether to add bad columns

add_hotpixels    y                    # Y/N: Whether to add hot pixels

add_deadpixels   y                    # Y/N: Whether to add dead(dark) pixels

readout16        n                    # Y/N: Whether to export as 16 subimages (channels) with pre- and over-scan

bright_fatter    y                    # Y/N: Whether to add brighter-fatter (also electron diffusion) effects

df_strength      2.3                  # Sillicon sensor diffusion strength

bias_level       500                  # e-/pixel

gain             1.1                  # Gain

full_well        90000                # Full well level [e-]

NBias            1                    # Number of frames to be exported

NDark            1                    # Number of frames to be exported

NFlat            1                    # Number of frames to be exported

dark_exptime     300                  # Exposure time for dark current frame

flat_exptime     150                  # Exposure time for flat field frame

readout_time     40                   # Time for read-out by each channel

#===========================================================

# Shear method

#===========================================================

shear_method  constant                # Only two methods are provided to generate mock shear field:

                                      # 'constant': all galaxies are assigned a constant reduced shear,

                                      #             but with different betas (orientations)

                                      # 'extra'   : from catalog(s) (not available yet)

# Constant shear field

reduced_g1  0.026                     # g1 component when 'shear_method'='constant'

reduced_g2  0.015                     # g2 component when 'shear_method'='constant'

reShear     E                         # Representation of the shear vertor

# Extra shear file

# shear_cat   mockShear.cat           # Extra provided shear catalog (currently not used)

#===========================================================

# Output directories

#===========================================================

mockImgDir    TEST                    # Name of subdirectory to save the mock image

#===========================================================

# Random Seeds

#===========================================================

seed_mock            12345678         # Seed for generating random values of ra, dec and av

seed_star            121212121        # Seed for generating random redshift, sed_type for stars

seed_gal             212121212        # Seed for generating random redshift, sed_type for galaxies

seed_Av              121212           # Seed for generating random intrinsic extinction

seed_poisson         20210601         # Seed for Poisson noise

seed_CR              20210317         # Seed for generating random cosmic ray map

seed_flat            20210101         # Seed for generating random flat field

seed_prnu            20210102         # Seed for photo-response non-uniformity

seed_skynoise        20210201         # Seed for sky noise

seed_gainNonUniform  20210202         # Seed for Gain nonuniformity

seed_biasNonUniform  20210203         # Seed for Bias nonuniformity

seed_rnNonUniform    20210204         # Seed for ReadNoise nonuniformity

seed_badcolumns      20240309         # Initial Seed for Bad Columns

seed_defective       20210304         # Seed for Defective(bad) pixels

seed_readout         20210601         # Seed for Read-out gaussian noise

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