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* Fit a range of galaxy models to an image.
*%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
* Copyright: (C) 2006-2010 IAP/CNRS/UPMC
* Author: Emmanuel Bertin (IAP)
*
* License: GNU General Public License
*
* SExtractor is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
* SExtractor is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
* You should have received a copy of the GNU General Public License
* along with SExtractor. If not, see <http://www.gnu.org/licenses/>.
*
* Last modified: 11/10/2010
*
*%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#ifndef HAVE_MATHIMF_H
#define _GNU_SOURCE
#endif
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include "define.h"
#include "globals.h"
#include "prefs.h"
#include "fits/fitscat.h"
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#include "levmar/levmar.h"
#include "fft.h"
#include "fitswcs.h"
#include "check.h"
#include "image.h"
#include "pattern.h"
#include "psf.h"
#include "profit.h"
static double prof_gammainc(double x, double a),
prof_gamma(double x);
static float prof_interpolate(profstruct *prof, float *posin);
static float interpolate_pix(float *posin, float *pix, int *naxisn,
static void make_kernel(float pos, float *kernel, interpenum interptype);
/*------------------------------- variables ---------------------------------*/
const char profname[][32]={"background offset", "point source",
"Sersic spheroid", "de Vaucouleurs spheroid",
"exponential disk", "spiral arms",
"bar", "inner ring", "outer ring", "tabulated model",
""};
const int interp_kernwidth[5]={1,2,4,6,8};
const int flux_flag[PARAM_NPARAM] = {0,
1,0,0,
1,0,0,0,0,
1,0,0,0,
1,0,0,0,0,0,0,0,
1,0,0,
1,0,0,
1,0,0
};
int theniter, the_gal;
/* "Local" global variables; it seems dirty but it simplifies a lot */
/* interfacing to the LM routines */
static picstruct *the_field, *the_wfield;
profitstruct *theprofit;
/****** profit_init ***********************************************************
PROTO profitstruct profit_init(psfstruct *psf)
PURPOSE Allocate and initialize a new profile-fitting structure.
INPUT Pointer to PSF structure.
OUTPUT A pointer to an allocated profit structure.
NOTES -.
AUTHOR E. Bertin (IAP)
***/
profitstruct *profit_init(psfstruct *psf)
{
profitstruct *profit;
int p, nprof,
backflag, diracflag, spheroidflag, diskflag,
barflag, armsflag;
QCALLOC(profit, profitstruct, 1);
profit->psf = psf;
profit->psfdft = NULL;
profit->nparam = 0;
QMALLOC(profit->prof, profstruct *, PROF_NPROF);
backflag = diracflag = spheroidflag = diskflag = barflag = armsflag = 0;
nprof = 0;
for (p=0; p<PROF_NPROF; p++)
if (!backflag && FLAG(obj2.prof_offset_flux))
{
profit->prof[p] = prof_init(profit, PROF_BACK);
backflag = 1;
nprof++;
}
else if (!diracflag && FLAG(obj2.prof_dirac_flux))
{
profit->prof[p] = prof_init(profit, PROF_DIRAC);
diracflag = 1;
nprof++;
}
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else if (!spheroidflag && FLAG(obj2.prof_spheroid_flux))
{
profit->prof[p] = prof_init(profit,
FLAG(obj2.prof_spheroid_sersicn)? PROF_SERSIC : PROF_DEVAUCOULEURS);
spheroidflag = 1;
nprof++;
}
else if (!diskflag && FLAG(obj2.prof_disk_flux))
{
profit->prof[p] = prof_init(profit, PROF_EXPONENTIAL);
diskflag = 1;
nprof++;
}
else if (diskflag && !barflag && FLAG(obj2.prof_bar_flux))
{
profit->prof[p] = prof_init(profit, PROF_BAR);
barflag = 1;
nprof++;
}
else if (barflag && !armsflag && FLAG(obj2.prof_arms_flux))
{
profit->prof[p] = prof_init(profit, PROF_ARMS);
armsflag = 1;
nprof++;
}
/* Allocate memory for the complete model */
QMALLOC16(profit->modpix, float, PROFIT_MAXMODSIZE*PROFIT_MAXMODSIZE);
QMALLOC16(profit->modpix2, float, PROFIT_MAXMODSIZE*PROFIT_MAXMODSIZE);
QMALLOC16(profit->cmodpix, float, PROFIT_MAXMODSIZE*PROFIT_MAXMODSIZE);
QMALLOC16(profit->psfpix, float, PROFIT_MAXMODSIZE*PROFIT_MAXMODSIZE);
QMALLOC16(profit->objpix, PIXTYPE, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
QMALLOC16(profit->objweight, PIXTYPE, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
QMALLOC16(profit->lmodpix, PIXTYPE, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
QMALLOC16(profit->lmodpix2, PIXTYPE, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
QMALLOC16(profit->resi, float, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
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QMALLOC16(profit->covar, float, profit->nparam*profit->nparam);
profit->oversamp = PROFIT_OVERSAMP;
profit->fluxfac = 1.0; /* Default */
return profit;
}
/****** profit_end ************************************************************
PROTO void prof_end(profstruct *prof)
PURPOSE End (deallocate) a profile-fitting structure.
INPUT Prof structure.
OUTPUT -.
NOTES -.
AUTHOR E. Bertin (IAP)
***/
void profit_end(profitstruct *profit)
{
int p;
for (p=0; p<profit->nprof; p++)
prof_end(profit->prof[p]);
free(profit->modpix);
free(profit->modpix2);
free(profit->cmodpix);
free(profit->psfpix);
free(profit->lmodpix);
free(profit->lmodpix2);
free(profit->objpix);
free(profit->objweight);
free(profit->resi);
free(profit->prof);
free(profit->covar);
free(profit->psfdft);
free(profit);
return;
}
/****** profit_fit ************************************************************
PROTO void profit_fit(profitstruct *profit, picstruct *field,
picstruct *wfield, objstruct *obj, obj2struct *obj2)
PURPOSE Fit profile(s) convolved with the PSF to a detected object.
INPUT Array of profile structures,
Number of profiles,
Pointer to the profile-fitting structure,
Pointer to the field,
Pointer to the field weight,
Pointer to the obj.
OUTPUT Pointer to an allocated fit structure (containing details about the
fit).
NOTES It is a modified version of the lm_minimize() of lmfit.
AUTHOR E. Bertin (IAP)
***/
void profit_fit(profitstruct *profit,
picstruct *field, picstruct *wfield,
objstruct *obj, obj2struct *obj2)
{
profitstruct pprofit;
patternstruct *pattern;
double emx2,emy2,emxy, a , cp,sp, cn, bn, n;
float param0[PARAM_NPARAM], param1[PARAM_NPARAM],
param[PARAM_NPARAM],
**list,
psf_fwhm, dchi2, err, aspect, chi2;
int *index,
i,j,p, nparam, nparam2, ncomp, nprof;
nprof = profit->nprof;
if (profit->psfdft)
{
QFREE(profit->psfdft);
}
psf = profit->psf;
profit->pixstep = psf->pixstep;
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obj2->prof_flag = 0;
/* Create pixmaps at image resolution */
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profit->ix = (int)(obj->mx + 0.49999);/* internal convention: 1st pix = 0 */
profit->iy = (int)(obj->my + 0.49999);/* internal convention: 1st pix = 0 */
profit->objnaxisn[0] = (((int)((obj->xmax-obj->xmin+1) + psf_fwhm + 0.499)
profit->objnaxisn[1] = (((int)((obj->ymax-obj->ymin+1) + psf_fwhm + 0.499)
*1.2)/2)*2 + 1;
if (profit->objnaxisn[1]<profit->objnaxisn[0])
profit->objnaxisn[1] = profit->objnaxisn[0];
else
profit->objnaxisn[0] = profit->objnaxisn[1];
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if (profit->objnaxisn[0]>PROFIT_MAXOBJSIZE)
{
profit->subsamp = ceil((float)profit->objnaxisn[0]/PROFIT_MAXOBJSIZE);
profit->objnaxisn[1] = (profit->objnaxisn[0] /= (int)profit->subsamp);
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obj2->prof_flag |= PROFLAG_OBJSUB;
}
else
profit->subsamp = 1.0;
profit->nobjpix = profit->objnaxisn[0]*profit->objnaxisn[1];
/* Use (dirty) global variables to interface with lmfit */
the_field = field;
the_wfield = wfield;
theprofit = profit;
profit->obj = obj;
profit->obj2 = obj2;
profit->nresi = profit_copyobjpix(profit, field, wfield);
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/* Check if the number of constraints exceeds the number of free parameters */
if (FLAG(obj2.prof_vector))
for (p=0; p<nparam; p++)
obj2->prof_vector[p] = 0.0;
if (FLAG(obj2.prof_errvector))
for (p=0; p<nparam; p++)
obj2->prof_errvector[p] = 0.0;
if (FLAG(obj2.prof_errmatrix))
for (p=0; p<nparam2; p++)
obj2->prof_errmatrix[p] = 0.0;
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obj2->prof_flag |= PROFLAG_NOTCONST;
return;
}
/* Create pixmap at PSF resolution */
profit->modnaxisn[0] =
((int)(profit->objnaxisn[0]*profit->subsamp/profit->pixstep
+0.4999)/2+1)*2;
((int)(profit->objnaxisn[1]*profit->subsamp/profit->pixstep
+0.4999)/2+1)*2;
if (profit->modnaxisn[1] < profit->modnaxisn[0])
profit->modnaxisn[1] = profit->modnaxisn[0];
else
profit->modnaxisn[0] = profit->modnaxisn[1];
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if (profit->modnaxisn[0]>PROFIT_MAXMODSIZE)
{
profit->pixstep = (double)profit->modnaxisn[0] / PROFIT_MAXMODSIZE;
profit->modnaxisn[0] = profit->modnaxisn[1] = PROFIT_MAXMODSIZE;
obj2->prof_flag |= PROFLAG_MODSUB;
}
profit->nmodpix = profit->modnaxisn[0]*profit->modnaxisn[1];
/* Compute the local PSF */
profit_psf(profit);
/* Set initial guesses and boundaries */
profit->sigma = obj->sigbkg;
profit_resetparams(profit);
/* Actual minimisation */
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the_gal++;
for (p=0; p<profit->nparam; p++)
profit->freeparam_flag[p] = 1;
profit->nfreeparam = profit->nparam;
profit->niter = profit_minimize(profit, PROFIT_MAXITER);
/*
chi2 = profit->chi2;
for (p=0; p<nparam; p++)
param1[p] = profit->paraminit[p];
profit_resetparams(profit);
for (p=0; p<nparam; p++)
profit->paraminit[p] = param1[p] + (profit->paraminit[p]<param1[p]?1.0:-1.0)
* sqrt(profit->covar[p*(nparam+1)]);
profit->niter = profit_minimize(profit, PROFIT_MAXITER);
if (chi2<profit->chi2)
for (p=0; p<nparam; p++)
profit->paraminit[p] = param1[p];
list = profit->paramlist;
index = profit->paramindex;
for (i=0; i<PARAM_NPARAM; i++)
if (list[i] && i!= PARAM_SPHEROID_ASPECT && i!=PARAM_SPHEROID_POSANG)
profit->freeparam_flag[index[i]] = 0;
profit->nfreeparam = 2;
profit->niter = profit_minimize(profit, PROFIT_MAXITER);
*/
for (p=0; p<nparam; p++)
profit->paramerr[p]= sqrt(profit->covar[p*(nparam+1)]);
/* CHECK-Images */
if ((check = prefs.check[CHECK_PROFILES]))
{
profit_residuals(profit,field,wfield, 0.0, profit->paraminit, NULL);
addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
profit->ix,profit->iy, 1.0);
}
if ((check = prefs.check[CHECK_SUBPROFILES]))
{
profit_residuals(profit,field,wfield, 0.0, profit->paraminit, NULL);
addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
profit->ix,profit->iy, -1.0);
}
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if ((check = prefs.check[CHECK_SPHEROIDS]))
{
/*-- Set to 0 flux components that do not belong to spheroids */
for (p=0; p<profit->nparam; p++)
param[p] = profit->paraminit[p];
list = profit->paramlist;
index = profit->paramindex;
for (i=0; i<PARAM_NPARAM; i++)
if (list[i] && flux_flag[i] && i!= PARAM_SPHEROID_FLUX)
param[index[i]] = 0.0;
profit_residuals(profit,field,wfield, 0.0, param, NULL);
addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
profit->ix,profit->iy, 1.0);
}
if ((check = prefs.check[CHECK_SUBSPHEROIDS]))
{
/*-- Set to 0 flux components that do not belong to spheroids */
for (p=0; p<profit->nparam; p++)
param[p] = profit->paraminit[p];
list = profit->paramlist;
index = profit->paramindex;
for (i=0; i<PARAM_NPARAM; i++)
if (list[i] && flux_flag[i] && i!= PARAM_SPHEROID_FLUX)
param[index[i]] = 0.0;
profit_residuals(profit,field,wfield, 0.0, param, NULL);
addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
profit->ix,profit->iy, -1.0);
}
if ((check = prefs.check[CHECK_DISKS]))
/*-- Set to 0 flux components that do not belong to disks */
for (p=0; p<profit->nparam; p++)
param[p] = profit->paraminit[p];
list = profit->paramlist;
index = profit->paramindex;
for (i=0; i<PARAM_NPARAM; i++)
if (list[i] && flux_flag[i] && i!= PARAM_DISK_FLUX)
param[index[i]] = 0.0;
profit_residuals(profit,field,wfield, 0.0, param, NULL);
addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
profit->ix,profit->iy, 1.0);
}
if ((check = prefs.check[CHECK_SUBDISKS]))
{
/*-- Set to 0 flux components that do not belong to disks */
for (p=0; p<profit->nparam; p++)
param[p] = profit->paraminit[p];
list = profit->paramlist;
index = profit->paramindex;
for (i=0; i<PARAM_NPARAM; i++)
if (list[i] && flux_flag[i] && i!= PARAM_DISK_FLUX)
param[index[i]] = 0.0;
profit_residuals(profit,field,wfield, 0.0, param, NULL);
addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
profit->ix,profit->iy, -1.0);
}
/* Compute compressed residuals */
profit_residuals(profit,field,wfield, 10.0, profit->paraminit,profit->resi);
/* Fill measurement parameters */
if (FLAG(obj2.prof_vector))
{
for (p=0; p<nparam; p++)
obj2->prof_vector[p]= profit->paraminit[p];
}
if (FLAG(obj2.prof_errvector))
{
for (p=0; p<nparam; p++)
obj2->prof_errvector[p]= profit->paramerr[p];
}
if (FLAG(obj2.prof_errmatrix))
{
for (p=0; p<nparam2; p++)
obj2->prof_errmatrix[p]= profit->covar[p];
}
obj2->prof_niter = profit->niter;
obj2->flux_prof = profit->flux;
if (FLAG(obj2.fluxerr_prof))
{
err = 0.0;
cov = profit->covar;
index = profit->paramindex;
list = profit->paramlist;
for (i=0; i<PARAM_NPARAM; i++)
if (flux_flag[i] && list[i])
{
cov = profit->covar + nparam*index[i];
for (j=0; j<PARAM_NPARAM; j++)
if (flux_flag[j] && list[j])
err += cov[index[j]];
}
obj2->fluxerr_prof = err>0.0? sqrt(err): 0.0;
}
obj2->prof_chi2 = (profit->nresi > profit->nparam)?
profit->chi2 / (profit->nresi - profit->nparam) : 0.0;
if (FLAG(obj2.x_prof))
{
i = profit->paramindex[PARAM_X];
j = profit->paramindex[PARAM_Y];
/*-- Model coordinates follow the FITS convention (first pixel at 1,1) */
if (profit->paramlist[PARAM_X])
{
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obj2->x_prof = (double)profit->ix + *profit->paramlist[PARAM_X] + 1.0;
obj2->poserrmx2_prof = emx2 = profit->covar[i*(nparam+1)];
}
else
emx2 = 0.0;
if (profit->paramlist[PARAM_Y])
{
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obj2->y_prof = (double)profit->iy + *profit->paramlist[PARAM_Y] + 1.0;
obj2->poserrmy2_prof = emy2 = profit->covar[j*(nparam+1)];
}
else
emy2 = 0.0;
if (profit->paramlist[PARAM_X] && profit->paramlist[PARAM_Y])
obj2->poserrmxy_prof = emxy = profit->covar[i+j*nparam];
else
emxy = 0.0;
/*-- Error ellipse parameters */
if (FLAG(obj2.poserra_prof))
{
double pmx2,pmy2,temp,theta;
if (fabs(temp=emx2-emy2) > 0.0)
theta = atan2(2.0 * emxy,temp) / 2.0;
else
theta = PI/4.0;
temp = sqrt(0.25*temp*temp+ emxy*emxy);
pmy2 = pmx2 = 0.5*(emx2+emy2);
pmx2+=temp;
pmy2-=temp;
obj2->poserra_prof = (float)sqrt(pmx2);
obj2->poserrb_prof = (float)sqrt(pmy2);
obj2->poserrtheta_prof = (float)(theta/DEG);
}
if (FLAG(obj2.poserrcxx_prof))
{
double temp;
obj2->poserrcxx_prof = (float)(emy2/(temp=emx2*emy2-emxy*emxy));
obj2->poserrcyy_prof = (float)(emx2/temp);
obj2->poserrcxy_prof = (float)(-2*emxy/temp);
}
}
if (FLAG(obj2.prof_mx2))
profit_moments(profit, obj2);
/* Do measurements on the rasterised model (surface brightnesses) */
if (FLAG(obj2.peak_prof))
profit_surface(profit, obj2);
/* Background offset */
if (FLAG(obj2.prof_offset_flux))
{
obj2->prof_offset_flux = *profit->paramlist[PARAM_BACK];
obj2->prof_offset_fluxerr=profit->paramerr[profit->paramindex[PARAM_BACK]];
}
/* Point source */
if (FLAG(obj2.prof_dirac_flux))
{
obj2->prof_dirac_flux = *profit->paramlist[PARAM_DIRAC_FLUX];
obj2->prof_dirac_fluxerr =
profit->paramerr[profit->paramindex[PARAM_DIRAC_FLUX]];
}
/* Spheroid */
if ((aspect = *profit->paramlist[PARAM_SPHEROID_ASPECT]) > 1.0)
{
*profit->paramlist[PARAM_SPHEROID_REFF] *= aspect;
profit->paramerr[profit->paramindex[PARAM_SPHEROID_REFF]] *= aspect;
profit->paramerr[profit->paramindex[PARAM_SPHEROID_ASPECT]]
/= (aspect*aspect);
*profit->paramlist[PARAM_SPHEROID_ASPECT] = 1.0 / aspect;
*profit->paramlist[PARAM_SPHEROID_POSANG] += 90.0;
}
obj2->prof_spheroid_flux = *profit->paramlist[PARAM_SPHEROID_FLUX];
obj2->prof_spheroid_fluxerr =
profit->paramerr[profit->paramindex[PARAM_SPHEROID_FLUX]];
obj2->prof_spheroid_reff = *profit->paramlist[PARAM_SPHEROID_REFF];
obj2->prof_spheroid_refferr =
profit->paramerr[profit->paramindex[PARAM_SPHEROID_REFF]];
obj2->prof_spheroid_aspect = *profit->paramlist[PARAM_SPHEROID_ASPECT];
obj2->prof_spheroid_aspecterr =
profit->paramerr[profit->paramindex[PARAM_SPHEROID_ASPECT]];
obj2->prof_spheroid_theta =
fmod_m90_p90(*profit->paramlist[PARAM_SPHEROID_POSANG]);
obj2->prof_spheroid_thetaerr =
profit->paramerr[profit->paramindex[PARAM_SPHEROID_POSANG]];
if (FLAG(obj2.prof_spheroid_sersicn))
{
obj2->prof_spheroid_sersicn = *profit->paramlist[PARAM_SPHEROID_SERSICN];
obj2->prof_spheroid_sersicnerr =
profit->paramerr[profit->paramindex[PARAM_SPHEROID_SERSICN]];
}
else
obj2->prof_spheroid_sersicn = 4.0;
if (FLAG(obj2.prof_spheroid_peak))
{
n = obj2->prof_spheroid_sersicn;
bn = 2.0*n - 1.0/3.0 + 4.0/(405.0*n) + 46.0/(25515.0*n*n)
+ 131.0/(1148175*n*n*n); /* Ciotti & Bertin 1999 */
cn = n * prof_gamma(2.0*n) * pow(bn, -2.0*n);
obj2->prof_spheroid_peak = obj2->prof_spheroid_reff>0.0?
obj2->prof_spheroid_flux * profit->pixstep*profit->pixstep
/ (2.0 * PI * cn
* obj2->prof_spheroid_reff*obj2->prof_spheroid_reff
* obj2->prof_spheroid_aspect)
: 0.0;
if (FLAG(obj2.prof_spheroid_fluxeff))
obj2->prof_spheroid_fluxeff = obj2->prof_spheroid_peak * exp(-bn);
if (FLAG(obj2.prof_spheroid_fluxmean))
obj2->prof_spheroid_fluxmean = obj2->prof_spheroid_peak * cn;
}
/* Disk */
if (FLAG(obj2.prof_disk_flux))
{
if ((aspect = *profit->paramlist[PARAM_DISK_ASPECT]) > 1.0)
{
*profit->paramlist[PARAM_DISK_SCALE] *= aspect;
profit->paramerr[profit->paramindex[PARAM_DISK_SCALE]] *= aspect;
profit->paramerr[profit->paramindex[PARAM_DISK_ASPECT]]
/= (aspect*aspect);
*profit->paramlist[PARAM_DISK_ASPECT] = 1.0 / aspect;
*profit->paramlist[PARAM_DISK_POSANG] += 90.0;
}
obj2->prof_disk_flux = *profit->paramlist[PARAM_DISK_FLUX];
obj2->prof_disk_fluxerr =
profit->paramerr[profit->paramindex[PARAM_DISK_FLUX]];
obj2->prof_disk_scale = *profit->paramlist[PARAM_DISK_SCALE];
obj2->prof_disk_scaleerr =
profit->paramerr[profit->paramindex[PARAM_DISK_SCALE]];
obj2->prof_disk_aspect = *profit->paramlist[PARAM_DISK_ASPECT];
obj2->prof_disk_aspecterr =
profit->paramerr[profit->paramindex[PARAM_DISK_ASPECT]];
obj2->prof_disk_theta = fmod_m90_p90(*profit->paramlist[PARAM_DISK_POSANG]);
obj2->prof_disk_thetaerr =
profit->paramerr[profit->paramindex[PARAM_DISK_POSANG]];
if (FLAG(obj2.prof_disk_inclination))
{
obj2->prof_disk_inclination = acos(obj2->prof_disk_aspect) / DEG;
if (FLAG(obj2.prof_disk_inclinationerr))
{
a = sqrt(1.0-obj2->prof_disk_aspect*obj2->prof_disk_aspect);
obj2->prof_disk_inclinationerr = obj2->prof_disk_aspecterr
/(a>0.1? a : 0.1)/DEG;
}
}
if (FLAG(obj2.prof_disk_peak))
{
obj2->prof_disk_peak = obj2->prof_disk_scale>0.0?
obj2->prof_disk_flux * profit->pixstep*profit->pixstep
/ (2.0 * PI * obj2->prof_disk_scale*obj2->prof_disk_scale
* obj2->prof_disk_aspect)
: 0.0;
if (FLAG(obj2.prof_disk_fluxeff))
obj2->prof_disk_fluxeff = obj2->prof_disk_peak * 0.186682; /* e^-(b_n)*/
if (FLAG(obj2.prof_disk_fluxmean))
obj2->prof_disk_fluxmean = obj2->prof_disk_peak * 0.355007;/* b_n^(-2)*/
/* Disk pattern */
if (prefs.pattern_flag)
{
profit_residuals(profit,field,wfield, PROFIT_DYNPARAM,
profit->paraminit,profit->resi);
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pattern = pattern_init(profit, prefs.pattern_type,
prefs.prof_disk_patternncomp);
pattern_fit(pattern, profit);
if (FLAG(obj2.prof_disk_patternspiral))
obj2->prof_disk_patternspiral = pattern_spiral(pattern);
if (FLAG(obj2.prof_disk_patternvector))
{
ncomp = pattern->size[2];
for (p=0; p<ncomp; p++)
obj2->prof_disk_patternvector[p] = (float)pattern->coeff[p];
}
if (FLAG(obj2.prof_disk_patternmodvector))
{
ncomp = pattern->ncomp*pattern->nfreq;
for (p=0; p<ncomp; p++)
obj2->prof_disk_patternmodvector[p] = (float)pattern->mcoeff[p];
}
if (FLAG(obj2.prof_disk_patternargvector))
{
ncomp = pattern->ncomp*pattern->nfreq;
for (p=0; p<ncomp; p++)
obj2->prof_disk_patternargvector[p] = (float)pattern->acoeff[p];
}
pattern_end(pattern);
}
/* Bar */
if (FLAG(obj2.prof_bar_flux))
{
obj2->prof_bar_flux = *profit->paramlist[PARAM_BAR_FLUX];
obj2->prof_bar_fluxerr =
profit->paramerr[profit->paramindex[PARAM_BAR_FLUX]];
obj2->prof_bar_length = *profit->paramlist[PARAM_ARMS_START]
**profit->paramlist[PARAM_DISK_SCALE];
obj2->prof_bar_lengtherr = *profit->paramlist[PARAM_ARMS_START]
* profit->paramerr[profit->paramindex[PARAM_DISK_SCALE]]
+ *profit->paramlist[PARAM_DISK_SCALE]
* profit->paramerr[profit->paramindex[PARAM_ARMS_START]];
obj2->prof_bar_aspect = *profit->paramlist[PARAM_BAR_ASPECT];
obj2->prof_bar_aspecterr =
profit->paramerr[profit->paramindex[PARAM_BAR_ASPECT]];
obj2->prof_bar_posang =
fmod_m90_p90(*profit->paramlist[PARAM_ARMS_POSANG]);
obj2->prof_bar_posangerr =
profit->paramerr[profit->paramindex[PARAM_ARMS_POSANG]];
if (FLAG(obj2.prof_bar_theta))
{
cp = cos(obj2->prof_bar_posang*DEG);
sp = sin(obj2->prof_bar_posang*DEG);
a = obj2->prof_disk_aspect;
obj2->prof_bar_theta = fmod_m90_p90(atan2(a*sp,cp)/DEG
+ obj2->prof_disk_theta);
obj2->prof_bar_thetaerr = obj2->prof_bar_posangerr*a/(cp*cp+a*a*sp*sp);
}
/* Arms */
if (FLAG(obj2.prof_arms_flux))
{
obj2->prof_arms_flux = *profit->paramlist[PARAM_ARMS_FLUX];
obj2->prof_arms_fluxerr =
profit->paramerr[profit->paramindex[PARAM_ARMS_FLUX]];
obj2->prof_arms_pitch =
fmod_m90_p90(*profit->paramlist[PARAM_ARMS_PITCH]);
obj2->prof_arms_pitcherr =
profit->paramerr[profit->paramindex[PARAM_ARMS_PITCH]];
obj2->prof_arms_start = *profit->paramlist[PARAM_ARMS_START]
**profit->paramlist[PARAM_DISK_SCALE];
obj2->prof_arms_starterr = *profit->paramlist[PARAM_ARMS_START]
* profit->paramerr[profit->paramindex[PARAM_DISK_SCALE]]
+ *profit->paramlist[PARAM_DISK_SCALE]
* profit->paramerr[profit->paramindex[PARAM_ARMS_START]];
obj2->prof_arms_quadfrac = *profit->paramlist[PARAM_ARMS_QUADFRAC];
obj2->prof_arms_quadfracerr =
profit->paramerr[profit->paramindex[PARAM_ARMS_QUADFRAC]];
obj2->prof_arms_posang =
fmod_m90_p90(*profit->paramlist[PARAM_ARMS_POSANG]);
obj2->prof_arms_posangerr =
profit->paramerr[profit->paramindex[PARAM_ARMS_POSANG]];
}
}
}
/* Star/galaxy classification */
if (FLAG(obj2.prof_class_star) || FLAG(obj2.prof_concentration))
{
pprofit = *profit;
memset(pprofit.paramindex, 0, PARAM_NPARAM*sizeof(int));
memset(pprofit.paramlist, 0, PARAM_NPARAM*sizeof(float *));
pprofit.nparam = 0;
QMALLOC(pprofit.prof, profstruct *, 1);
pprofit.prof[0] = prof_init(&pprofit, PROF_DIRAC);
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QMALLOC16(pprofit.covar, float, pprofit.nparam*pprofit.nparam);
pprofit.nprof = 1;
profit_resetparams(&pprofit);
if (profit->paramlist[PARAM_X] && profit->paramlist[PARAM_Y])
{
pprofit.paraminit[pprofit.paramindex[PARAM_X]] = *profit->paramlist[PARAM_X];
pprofit.paraminit[pprofit.paramindex[PARAM_Y]] = *profit->paramlist[PARAM_Y];
}
pprofit.paraminit[pprofit.paramindex[PARAM_DIRAC_FLUX]] = profit->flux;
for (p=0; p<pprofit.nparam; p++)
pprofit.freeparam_flag[p] = 1;
pprofit.nfreeparam = pprofit.nparam;
pprofit.niter = profit_minimize(&pprofit, PROFIT_MAXITER);
profit_residuals(&pprofit,field,wfield, PROFIT_DYNPARAM, pprofit.paraminit,
if (FLAG(obj2.prof_class_star))
{
dchi2 = 0.5*(pprofit.chi2 - profit->chi2);
obj2->prof_class_star = dchi2 < 50.0?
(dchi2 > -50.0? 2.0/(1.0+expf(dchi2)) : 2.0) : 0.0;
}
if (FLAG(obj2.prof_concentration))
{
if (profit->flux > 0.0 && pprofit.flux > 0.0)
obj2->prof_concentration = -2.5*log10(pprofit.flux / profit->flux);
else if (profit->flux > 0.0)
obj2->prof_concentration = 99.0;
else if (pprofit.flux > 0.0)
obj2->prof_concentration = -99.0;
if (FLAG(obj2.prof_concentrationerr))
obj2->prof_concentrationerr = (obj2->flux_prof > 0.0?
1.086*(obj2->fluxerr_prof / obj2->flux_prof) : 99.0);
prof_end(pprofit.prof[0]);
free(pprofit.prof);
free(pprofit.covar);
}
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fft_reset();
/****i* prof_gammainc *********************************************************
PROTO double prof_gammainc(double x, double a)
PURPOSE Returns the incomplete Gamma function (based on algorithm described in
Numerical Recipes in C, chap. 6.1).
INPUT A double,
upper integration limit.
OUTPUT Incomplete Gamma function.
NOTES -.
AUTHOR E. Bertin (IAP)
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*/
static double prof_gammainc (double x, double a)
{
double b,c,d,h, xn,xp, del,sum;
int i;
if (a < 0.0 || x <= 0.0)
return 0.0;
if (a < (x+1.0))
{
/*-- Use the series representation */
xp = x;
del = sum = 1.0/x;
for (i=100;i--;) /* Iterate to convergence */
{
sum += (del *= a/(++xp));
if (fabs(del) < fabs(sum)*3e-7)
return sum*exp(-a+x*log(a)) / prof_gamma(x);
}
}
else
{
/*-- Use the continued fraction representation and take its complement */
b = a + 1.0 - x;
c = 1e30;
h = d = 1.0/b;
for (i=1; i<=100; i++) /* Iterate to convergence */
{
xn = -i*(i-x);
b += 2.0;
if (fabs(d=xn*d+b) < 1e-30)
d = 1e-30;
if (fabs(c=b+xn/c) < 1e-30)
c = 1e-30;
del= c * (d = 1.0/d);
h *= del;
if (fabs(del-1.0) < 3e-7)
return 1.0 - exp(-a+x*log(a))*h / prof_gamma(x);
}
}
error(EXIT_FAILURE, "*Error*: out of bounds in ",
"prof_gammainc()");
return 0.0;
}
/****i* prof_gamma ************************************************************
PROTO double prof_gamma(double xx)
PURPOSE Returns the Gamma function (based on algorithm described in Numerical
Recipes in C, chap 6.1).
INPUT A double.
OUTPUT Gamma function.
NOTES -.
AUTHOR E. Bertin (IAP)
*/
static double prof_gamma(double xx)
{
double x,tmp,ser;
static double cof[6]={76.18009173,-86.50532033,24.01409822,
-1.231739516,0.120858003e-2,-0.536382e-5};
int j;
tmp=(x=xx-1.0)+5.5;
tmp -= (x+0.5)*log(tmp);
ser=1.0;
for (j=0;j<6;j++)
ser += cof[j]/(x+=1.0);
return 2.50662827465*ser*exp(-tmp);
}
/****** profit_minradius ******************************************************
PROTO float profit_minradius(profitstruct *profit, float refffac)
PURPOSE Returns the minimum disk radius that guarantees that each and
every model component fits within some margin in that disk.
INPUT Profit structure pointer,
margin in units of (r/r_eff)^(1/n)).
OUTPUT Radius (in pixels).
NOTES -.
AUTHOR E. Bertin (IAP)
*/
float profit_minradius(profitstruct *profit, float refffac)
{
double r,reff,rmax;
int p;
rmax = reff = 0.0;
for (p=0; p<profit->nprof; p++)
{
switch (profit->prof[p]->code)
{
case PROF_BACK:
case PROF_DIRAC:
reff = 0.0;
break;
case PROF_SERSIC:
reff = *profit->paramlist[PARAM_SPHEROID_REFF];
case PROF_DEVAUCOULEURS:
reff = *profit->paramlist[PARAM_SPHEROID_REFF];
case PROF_EXPONENTIAL:
reff = *profit->paramlist[PARAM_DISK_SCALE]*1.67835;
default:
error(EXIT_FAILURE, "*Internal Error*: Unknown profile parameter in ",
"profit_minradius()");
}
r = reff*(double)refffac;
if (r>rmax)
rmax = r;
}
return (float)rmax;
}
/****** profit_psf ************************************************************
PROTO void profit_psf(profitstruct *profit)
PURPOSE Build the local PSF at a given resolution.
INPUT Profile-fitting structure.
OUTPUT -.
NOTES -.
AUTHOR E. Bertin (IAP)
***/
void profit_psf(profitstruct *profit)
{
double flux;
float posin[2], posout[2], dnaxisn[2],
xcout,ycout, xcin,ycin, invpixstep, norm;
int d,i;
psf = profit->psf;
psf_build(psf);
xcout = (float)(profit->modnaxisn[0]/2) + 1.0; /* FITS convention */
ycout = (float)(profit->modnaxisn[1]/2) + 1.0; /* FITS convention */
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xcin = (psf->masksize[0]/2) + 1.0; /* FITS convention */
ycin = (psf->masksize[1]/2) + 1.0; /* FITS convention */
invpixstep = profit->pixstep / psf->pixstep;
/* Initialize multi-dimensional counters */
for (d=0; d<2; d++)
{
posout[d] = 1.0; /* FITS convention */
dnaxisn[d] = profit->modnaxisn[d]+0.5;
}
/* Remap each pixel */
pixout = profit->psfpix;
flux = 0.0;
for (i=profit->modnaxisn[0]*profit->modnaxisn[1]; i--;)
{
posin[0] = (posout[0] - xcout)*invpixstep + xcin;
posin[1] = (posout[1] - ycout)*invpixstep + ycin;
flux += ((*(pixout++) = interpolate_pix(posin, psf->maskloc,
psf->masksize, INTERP_LANCZOS3)));
for (d=0; d<2; d++)
if ((posout[d]+=1.0) < dnaxisn[d])
break;
else
posout[d] = 1.0;
}
/* Normalize PSF flux (just in case...) */
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flux *= profit->pixstep*profit->pixstep;
if (fabs(flux) <= 0.0)
error(EXIT_FAILURE, "*Error*: PSF model is empty or negative: ", psf->name);
norm = 1.0/flux;
pixout = profit->psfpix;
for (i=profit->modnaxisn[0]*profit->modnaxisn[1]; i--;)
*(pixout++) *= norm;
return;
}
/****** profit_minimize *******************************************************
PROTO void profit_minimize(profitstruct *profit)
PURPOSE Provide a function returning residuals to lmfit.
INPUT Pointer to the profit structure involved in the fit,
maximum number of iterations.
OUTPUT Number of iterations used.
NOTES -.
AUTHOR E. Bertin (IAP)
***/
int profit_minimize(profitstruct *profit, int niter)
{
double lm_opts[5], info[LM_INFO_SZ];
double dcovar[PARAM_NPARAM*PARAM_NPARAM],
dparam[PARAM_NPARAM];