Updated WCS library: fixed issue with TPV CTYPEs and added support for MJDSTART header keyword.

Updated FITS library to the latest version, removing potential conflicts with the CFITSIO library.
Added PSF/model-fitting support for MEFs.
Pushed version number to 2.17.0

configure

 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.68 for sextractor 2.16.3.
+# Generated by GNU Autoconf 2.68 for sextractor 2.17.0.
 #
 # Report bugs to <bertin@iap.fr>.
 #
@@ -714,8 +714,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='sextractor'
 PACKAGE_TARNAME='sextractor'
-PACKAGE_VERSION='2.16.3'
-PACKAGE_STRING='sextractor 2.16.3'
+PACKAGE_VERSION='2.17.0'
+PACKAGE_STRING='sextractor 2.17.0'
 PACKAGE_BUGREPORT='bertin@iap.fr'
 PACKAGE_URL=''
@@ -1465,7 +1465,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures sextractor 2.16.3 to adapt to many kinds of systems.
+\`configure' configures sextractor 2.17.0 to adapt to many kinds of systems.
 Usage: $0 [OPTION]... [VAR=VALUE]...
@@ -1535,7 +1535,7 @@ fi
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of sextractor 2.16.3:";;
+     short | recursive ) echo "Configuration of sextractor 2.17.0:";;
    esac
   cat <<\_ACEOF
@@ -1668,7 +1668,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-sextractor configure 2.16.3
+sextractor configure 2.17.0
 generated by GNU Autoconf 2.68
 Copyright (C) 2010 Free Software Foundation, Inc.
@@ -2296,7 +2296,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
-It was created by sextractor $as_me 2.16.3, which was
+It was created by sextractor $as_me 2.17.0, which was
 generated by GNU Autoconf 2.68.  Invocation command line was
   $ $0 $@
@@ -2972,7 +2972,7 @@ fi
 # Define the identity of the package.
  PACKAGE='sextractor'
- VERSION='2.16.3'
+ VERSION='2.17.0'
 cat >>confdefs.h <<_ACEOF
@@ -23325,7 +23325,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by sextractor $as_me 2.16.3, which was
+This file was extended by sextractor $as_me 2.17.0, which was
 generated by GNU Autoconf 2.68.  Invocation command line was
   CONFIG_FILES    = $CONFIG_FILES
@@ -23391,7 +23391,7 @@ _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_version="\\
-sextractor config.status 2.16.3
+sextractor config.status 2.17.0
 configured by $0, generated by GNU Autoconf 2.68,
   with options \\"\$ac_cs_config\\"

configure.ac

@@ -31,7 +31,7 @@ define([AC_CACHE_LOAD],)
 define([AC_CACHE_SAVE],)
 
 # This is your standard Bertin source code...
-AC_INIT(sextractor, 2.16.3, [bertin@iap.fr])
+AC_INIT(sextractor, 2.17.0, [bertin@iap.fr])
 AC_CONFIG_SRCDIR(src/makeit.c)
 AC_CONFIG_AUX_DIR(autoconf)
 AM_CONFIG_HEADER(config.h)

man/sex.1

-.TH SEXTRACTOR "1" "June 2012" "SExtractor 2.16.3" "User Commands"
+.TH SEXTRACTOR "1" "June 2012" "SExtractor 2.17.0" "User Commands"
 .SH NAME
 sex \- extract a source catalogue from an astronomical FITS image
 .SH SYNOPSIS

src/field.c

@@ -7,7 +7,7 @@
 *
 *	This file part of:	SExtractor
 *
-*	Copyright:		(C) 1993-2010 Emmanuel Bertin -- IAP/CNRS/UPMC
+*	Copyright:		(C) 1993-2012 Emmanuel Bertin -- IAP/CNRS/UPMC
 *
 *	License:		GNU General Public License
 *
@@ -22,7 +22,7 @@
 *	You should have received a copy of the GNU General Public License
 *	along with SExtractor. If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		11/10/2010
+*	Last modified:		26/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -70,17 +70,11 @@ picstruct	*newfield(char *filename, int flags, int nok)
   field->flags = flags;
   field->cat = cat;
   tab = cat->tab;
-  nok++;	/* At least one pass through the loop */
   nok2 = nok;
-  for (ntab=cat->ntab; nok && ntab--; tab=tab->nexttab)
-    {
-    if ((tab->naxis < 2)
-	|| !strncmp(tab->xtension, "BINTABLE", 8)
-	|| !strncmp(tab->xtension, "ASCTABLE", 8))
-      continue;
-    field->tab = tab;
-    nok--;
-    }
+  for (ntab=cat->ntab; nok-- && ntab--;)
+    tab=tab->nexttab;
+  field->tab = tab;
+
   if (ntab<0)
     error(EXIT_FAILURE, "Not enough valid FITS image extensions in ",filename);
 

src/fits/fitsbody.c

@@ -7,7 +7,7 @@
 *
 *	This file part of:	AstrOmatic FITS/LDAC library
 *
-*	Copyright:		(C) 1995-2010 Emmanuel Bertin -- IAP/CNRS/UPMC
+*	Copyright:		(C) 1995-2012 Emmanuel Bertin -- IAP/CNRS/UPMC
 *
 *	License:		GNU General Public License
 *
@@ -23,7 +23,7 @@
 *	along with AstrOmatic software.
 *	If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		09/10/2010
+*	Last modified:		16/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -150,6 +150,106 @@ PIXTYPE	*alloc_body(tabstruct *tab, void (*func)(PIXTYPE *ptr, int npix))
   }
 
 
+/******* alloc_ibody ***********************************************************
+PROTO	FLAGTYPE *alloc_ibody(tabstruct *tab,
+			void (*func)(FLAGTYPE *ptr, int npix))
+PURPOSE	Allocate memory for and read a FITS integer data body (read-only).
+	If not enough RAM is available, a swap file is created.
+INPUT	Table (tab) structure.
+OUTPUT	Pointer to the mapped data if OK, or NULL otherwise.
+NOTES	The file pointer must be positioned at the beginning of the data.
+AUTHOR	E. Bertin (IAP)
+VERSION	30/01/2012
+ ***/
+FLAGTYPE	*alloc_ibody(tabstruct *tab,
+			void (*func)(FLAGTYPE *ptr, int npix))
+  {
+   FILE		*file;
+   FLAGTYPE	*buffer;
+   size_t	npix, size, sizeleft, spoonful;
+
+  if (!body_ramflag)
+    {
+    body_ramleft = body_maxram;
+    body_vramleft = body_maxvram;
+    body_ramflag = 1;
+    }
+
+/* Return a NULL pointer if size is zero */
+  if (!tab->tabsize)
+    return (FLAGTYPE *)NULL;
+
+/* Check that there is a cat parent structure and that the file is open */
+   if (tab->cat && !tab->cat->file)
+     error(EXIT_FAILURE, "*Internal Error*: Cannot access table: ",
+			tab->extname);
+
+/* Decide if the data will go in physical memory or on swap-space */
+  npix = tab->tabsize/tab->bytepix;
+  size = npix*sizeof(FLAGTYPE);
+  if (size < body_ramleft)
+    {
+/*-- There should be enough RAM left: try to do a malloc() */
+    if ((tab->bodybuf = malloc(size)))
+      {
+      QFSEEK(tab->cat->file, tab->bodypos, SEEK_SET, tab->cat->filename);
+      read_ibody(tab, (FLAGTYPE *)tab->bodybuf, npix);
+/*---- Apply pixel processing */
+      if (func)
+        (*func)((FLAGTYPE *)tab->bodybuf, npix);
+      body_ramleft -= size;
+
+      return (FLAGTYPE *)tab->bodybuf;
+      }
+    else
+      tab->bodybuf = NULL;
+    }
+
+  if (size < body_vramleft)
+    {
+/*-- Convert and copy the data to a swap file, and mmap() it */
+    if (!(buffer = malloc(DATA_BUFSIZE)))
+      return NULL;
+    sprintf(tab->swapname, "%s/vm%05ld_%05x.tmp",
+		body_swapdirname, (long)getpid(),
+		(unsigned int)++body_vmnumber) ;
+    if (!(file=fopen(tab->swapname, "wb+")))
+      error(EXIT_FAILURE, "*Error*: cannot create swap-file ", tab->swapname);
+    add_cleanupfilename(tab->swapname);
+    spoonful = (size%DATA_BUFSIZE);
+    if (!spoonful)
+      spoonful = DATA_BUFSIZE;
+    QFSEEK(tab->cat->file, tab->bodypos, SEEK_SET, tab->cat->filename);
+    read_ibody(tab, buffer, spoonful/sizeof(FLAGTYPE));
+/*-- Apply pixel processing */
+    if (func)
+      (*func)(buffer, spoonful/sizeof(FLAGTYPE));
+    QFWRITE(buffer, spoonful, file, tab->swapname);
+    for (sizeleft = size; sizeleft -= spoonful;)
+      {
+      read_ibody(tab, buffer, (spoonful=DATA_BUFSIZE)/sizeof(FLAGTYPE));
+/*--- Apply pixel processing */
+      if (func)
+        (*func)(buffer, spoonful/sizeof(FLAGTYPE));
+      QFWRITE(buffer, spoonful, file, tab->swapname);
+      }
+    free(buffer);
+    tab->bodybuf = mmap(NULL,size,PROT_READ,MAP_SHARED,fileno(file),(off_t)0);
+    fclose(file);
+    tab->swapflag = 1;
+    body_vramleft -= size;
+
+/*-- Memory mapping problem */
+    if (tab->bodybuf == (void *)-1)
+      return NULL;
+    return (FLAGTYPE *)tab->bodybuf;
+    }
+
+/* If no memory left at all: forget it! */
+  return NULL;
+  }
+
+
 /******* free_body ************************************************************
 PROTO	void free_body(tabstruct *tab)
 PURPOSE	Free FITS body data.
@@ -204,7 +304,7 @@ INPUT	A pointer to the tab structure,
 OUTPUT	-.
 NOTES	.
 AUTHOR	E. Bertin (IAP)
-VERSION	24/08/2010
+VERSION	13/06/2012
  ***/
 void	read_body(tabstruct *tab, PIXTYPE *ptr, size_t size)
   {
@@ -217,7 +317,7 @@ void	read_body(tabstruct *tab, PIXTYPE *ptr, size_t size)
   short			val16, sval, sblank;
 #ifdef HAVE_LONG_LONG_INT
   ULONGLONG		lluval, llublank;
-  LONGLONG		llval, llblank;
+  SLONGLONG		llval, llblank;
 #endif
   unsigned int		iuval, iublank;
   int			curval, dval, blankflag, ival, iblank;
@@ -346,9 +446,9 @@ void	read_body(tabstruct *tab, PIXTYPE *ptr, size_t size)
 	      {
               if (tab->bitsgn)
                 {
-                llblank = (LONGLONG)tab->blank;
-                for (i=spoonful; i--; bufdata += sizeof(LONGLONG))
-                  *(ptr++) = ((llval = *((LONGLONG *)bufdata)) == llblank)?
+                llblank = (SLONGLONG)tab->blank;
+                for (i=spoonful; i--; bufdata += sizeof(SLONGLONG))
+                  *(ptr++) = ((llval = *((SLONGLONG *)bufdata)) == llblank)?
 			-BIG : llval*bs + bz;
                 }
               else
@@ -362,8 +462,8 @@ void	read_body(tabstruct *tab, PIXTYPE *ptr, size_t size)
             else
 	      {
               if (tab->bitsgn)
-                for (i=spoonful; i--; bufdata += sizeof(LONGLONG))
-                  *(ptr++) = *((LONGLONG *)bufdata)*bs + bz;
+                for (i=spoonful; i--; bufdata += sizeof(SLONGLONG))
+                  *(ptr++) = *((SLONGLONG *)bufdata)*bs + bz;
               else
                 for (i=spoonful; i--; bufdata += sizeof(ULONGLONG))
                   *(ptr++) = *((ULONGLONG *)bufdata)*bs + bz;
@@ -511,7 +611,7 @@ INPUT	A pointer to the tab structure,
 OUTPUT	-.
 NOTES	.
 AUTHOR	E. Bertin (IAP)
-VERSION	02/11/2009
+VERSION	01/02/2012
  ***/
 void	read_ibody(tabstruct *tab, FLAGTYPE *ptr, size_t size)
   {
@@ -554,8 +654,8 @@ void	read_ibody(tabstruct *tab, FLAGTYPE *ptr, size_t size)
           case BP_LONG:
             if (bswapflag)
               swapbytes(bufdata, 4, spoonful);
-            for (i=spoonful; i--; bufdata += sizeof(unsigned long))
-              *(ptr++) = (FLAGTYPE)*((unsigned long *)bufdata);
+            for (i=spoonful; i--; bufdata += sizeof(unsigned int))
+              *(ptr++) = (FLAGTYPE)*((unsigned int *)bufdata);
             break;
 
 #ifdef HAVE_LONG_LONG_INT
@@ -568,7 +668,7 @@ void	read_ibody(tabstruct *tab, FLAGTYPE *ptr, size_t size)
 #endif
           case BP_FLOAT:
           case BP_DOUBLE:
-            error(EXIT_FAILURE,"*Error*: I was expecting integers in ",
+            error(EXIT_FAILURE,"*Error*: expected integers, not floats, in ",
 				cat->filename);
             break;
           default:
@@ -687,15 +787,15 @@ INPUT	A pointer to the tab structure,
 OUTPUT	-.
 NOTES	.
 AUTHOR	E. Bertin (IAP)
-VERSION	02/11/2009
+VERSION	13/06/2012
  ***/
 void	write_body(tabstruct *tab, PIXTYPE *ptr, size_t size)
   {
-   static double	bufdata0[DATA_BUFSIZE/sizeof(double)];
-   catstruct		*cat;
-   char			*cbufdata0;
-   size_t		i, bowl, spoonful;
-   PIXTYPE		bs,bz;
+  static double	bufdata0[DATA_BUFSIZE/sizeof(double)];
+  catstruct	*cat;
+  char		*cbufdata0;
+  size_t	i, bowl, spoonful;
+  PIXTYPE	bs,bz;
 
   bs = (PIXTYPE)tab->bscale;
   bz = (PIXTYPE)tab->bzero;
@@ -729,7 +829,7 @@ void	write_body(tabstruct *tab, PIXTYPE *ptr, size_t size)
               {
                unsigned char	*bufdata = (unsigned char *)cbufdata0;
               for (i=spoonful; i--;)
-                *(bufdata++) = (unsigned char)((*(ptr++)-bz)/bs+0.49999);
+                *(bufdata++) = (unsigned char)((*(ptr++)-bz)/bs+0.49999);;
               }
             break;
 
@@ -771,9 +871,9 @@ void	write_body(tabstruct *tab, PIXTYPE *ptr, size_t size)
           case BP_LONGLONG:
            if (tab->bitsgn)
               {
-               LONGLONG	*bufdata = (LONGLONG *)cbufdata0;
+               SLONGLONG	*bufdata = (SLONGLONG *)cbufdata0;
               for (i=spoonful; i--;)
-                *(bufdata++) = (LONGLONG)((*(ptr++)-bz)/bs+0.49999);
+                *(bufdata++) = (SLONGLONG)((*(ptr++)-bz)/bs+0.49999);
               }
             else
               {
@@ -923,9 +1023,9 @@ void	write_ibody(tabstruct *tab, FLAGTYPE *ptr, size_t size)
           case BP_LONGLONG:
            if (tab->bitsgn)
               {
-               LONGLONG	*bufdata = (LONGLONG *)cbufdata0;
+               SLONGLONG	*bufdata = (SLONGLONG *)cbufdata0;
               for (i=spoonful; i--;)
-                *(bufdata++) = (LONGLONG)*(ptr++);
+                *(bufdata++) = (SLONGLONG)*(ptr++);
               }
             else
               {

src/fits/fitscat.h

@@ -7,7 +7,7 @@
 *
 *	This file part of:	AstrOmatic FITS/LDAC library
 *
-*	Copyright:		(C) 1995-2010 Emmanuel Bertin -- IAP/CNRS/UPMC
+*	Copyright:		(C) 1995-2012 Emmanuel Bertin -- IAP/CNRS/UPMC
 *
 *	License:		GNU General Public License
 *
@@ -23,13 +23,15 @@
 *	along with AstrOmatic software.
 *	If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		02/12/2010
+*	Last modified:		16/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
 #ifndef _FITSCAT_H_
 #define _FITSCAT_H_
 
+#include <stdio.h>
+
 #ifdef HAVE_SYS_TYPES_H
 #include <sys/types.h>
 #endif
@@ -100,17 +102,15 @@ typedef	size_t				KINGSIZE_T;/* better than nothing */
 typedef union {unsigned int l[2];}	ULONGLONG;
 #endif
 #ifdef HAVE_LONG_LONG_INT
-typedef	long long			KINGLONG;	/* for large sizes */
-typedef long long			LONGLONG;
+typedef long long			SLONGLONG;
 #else
-typedef	long				KINGLONG;/* better than nothing */
-typedef union {int l[2];}		LONGLONG;
+typedef union {int l[2];}		SLONGLONG;
 #endif
 
-#if _FILE_OFFSET_BITS
+#if defined(_FILE_OFFSET_BITS) && !defined(OFF_T)
 #define OFF_T	off_t
 #else
-#define OFF_T	KINGLONG
+#define OFF_T	long
 #endif
 
 /*------------------------------- constants ---------------------------------*/
@@ -323,6 +323,9 @@ extern int	about_cat(catstruct *cat, FILE *stream),
 extern PIXTYPE	*alloc_body(tabstruct *tab,
 			void (*func)(PIXTYPE *ptr, int npix));
 
+extern FLAGTYPE	*alloc_ibody(tabstruct *tab,
+			void (*func)(FLAGTYPE *ptr, int npix));
+
 extern t_type	ttypeof(char *str);
 
 extern  void	error(int, char *, char *),

src/fits/fitsconv.c

@@ -7,7 +7,7 @@
 *
 *	This file part of:	AstrOmatic FITS/LDAC library
 *
-*	Copyright:		(C) 1995-2010 Emmanuel Bertin -- IAP/CNRS/UPMC
+*	Copyright:		(C) 1995-2012 Emmanuel Bertin -- IAP/CNRS/UPMC
 *
 *	License:		GNU General Public License
 *
@@ -23,7 +23,7 @@
 *	along with AstrOmatic software.
 *	If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		09/10/2010
+*	Last modified:		13/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -146,7 +146,7 @@ INPUT	Pointer to element to convert,
 OUTPUT	-.
 NOTES	ttypeconv does not yet handle arrays.
 AUTHOR  E. Bertin (IAP)
-VERSION 19/11/2009
+VERSION 13/06/2012
  ***/
 
 void	ttypeconv(void *ptrin, void *ptrout, t_type ttypein, t_type ttypeout)
@@ -170,7 +170,7 @@ void	ttypeconv(void *ptrin, void *ptrout, t_type ttypein, t_type ttypeout)
            *((int *)ptrout) = (int)x;		\
            break;				\
          case T_LONGLONG:			\
-           *((LONGLONG *)ptrout) = (LONGLONG)x;	\
+           *((SLONGLONG *)ptrout) = (SLONGLONG)x;	\
            break;				\
          case T_FLOAT:				\
            *((float *)ptrout) = (float)x;	\
@@ -220,7 +220,7 @@ void	ttypeconv(void *ptrin, void *ptrout, t_type ttypein, t_type ttypeout)
       break;
 #ifdef HAVE_LONG_LONG_INT
     case T_LONGLONG:
-      OUTCONV(*(LONGLONG *)ptrin, ttypeout);
+      OUTCONV(*(SLONGLONG *)ptrin, ttypeout);
       break;
 #endif
     case T_FLOAT:

src/fits/fitskey.c

@@ -7,7 +7,7 @@
 *
 *	This file part of:	AstrOmatic FITS/LDAC library
 *
-*	Copyright:		(C) 1995-2010 Emmanuel Bertin -- IAP/CNRS/UPMC
+*	Copyright:		(C) 1995-2012 Emmanuel Bertin -- IAP/CNRS/UPMC
 *
 *	License:		GNU General Public License
 *
@@ -23,7 +23,7 @@
 *	along with AstrOmatic software.
 *	If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		09/10/2010
+*	Last modified:		13/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -588,7 +588,7 @@ NOTES	This is approximately the same code as for read_keys.
 	A NULL keynames pointer means read ALL keys belonging to the table.
 	A NULL mask pointer means NO selection for reading.
 AUTHOR	E. Bertin (IAP & Leiden observatory)
-VERSION	08/02/2010
+VERSION	13/06/2012
  ***/
 void	show_keys(tabstruct *tab, char **keynames, keystruct **keys, int nkeys,
 		BYTE *mask, FILE *stream,
@@ -864,7 +864,7 @@ void	show_keys(tabstruct *tab, char **keynames, keystruct **keys, int nkeys,
                 if (key_col[k] == 0 || key_col[k] == j+1) {
 #ifdef HAVE_LONG_LONG_INT
                    fprintf(stream, *key->printf?key->printf:"%lld",
-		         		*(LONGLONG *)ptr);
+		         		*(SLONGLONG *)ptr);
 #else
                    fprintf(stream, *key->printf?key->printf:"%d",
 		         		*(int *)ptr);

src/fits/fitsutil.c

@@ -7,7 +7,7 @@
 *
 *	This file part of:	AstrOmatic FITS/LDAC library
 *
-*	Copyright:		(C) 1995-2010 Emmanuel Bertin -- IAP/CNRS/UPMC
+*	Copyright:		(C) 1995-2012 Emmanuel Bertin -- IAP/CNRS/UPMC
 *
 *	License:		GNU General Public License
 *
@@ -23,7 +23,7 @@
 *	along with AstrOmatic software.
 *	If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		09/10/2010
+*	Last modified:		13/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -323,7 +323,7 @@ INPUT	pointer to the FITS buffer,
 OUTPUT	RETURN_OK if the keyword was found, RETURN_ERROR otherwise.
 NOTES	The buffer MUST contain the ``END     '' keyword.
 AUTHOR	E. Bertin (IAP & Leiden observatory)
-VERSION	02/11/2009
+VERSION	13/06/2012
  ***/
 int	fitsread(char *fitsbuf, char *keyword, void *ptr, h_type htype,
 		t_type ttype)
@@ -347,7 +347,7 @@ int	fitsread(char *fitsbuf, char *keyword, void *ptr, h_type htype,
 			  sscanf(str+10, "    %hd", (short *)ptr);
 #ifdef HAVE_LONG_LONG_INT
 			else
-			  sscanf(str+10, "    %lld", (LONGLONG *)ptr);
+			  sscanf(str+10, "    %lld", (SLONGLONG *)ptr);
 #endif
 			break;
 
@@ -368,7 +368,7 @@ int	fitsread(char *fitsbuf, char *keyword, void *ptr, h_type htype,
 			  *(LONG *)ptr = ((int)s[0] == 'T') ? 1 : 0;
 #ifdef HAVE_LONG_LONG_INT
                         else
-			  *(LONGLONG *)ptr = ((int)s[0] == 'T') ? 1 : 0;
+			  *(SLONGLONG *)ptr = ((int)s[0] == 'T') ? 1 : 0;
 #endif
 			break;
 
@@ -460,7 +460,7 @@ OUTPUT	RETURN_OK if the keyword was found, RETURN_ERROR otherwise.
 NOTES	The buffer MUST contain the ``END     '' keyword.
 	The keyword must already exist in the buffer (use fitsadd()).
 AUTHOR	E. Bertin (IAP & Leiden observatory)
-VERSION	02/11/2009
+VERSION	13/06/2012
  ***/
 int	fitswrite(char *fitsbuf, char *keyword, void *ptr, h_type htype,
 		t_type ttype)
@@ -485,7 +485,7 @@ int	fitswrite(char *fitsbuf, char *keyword, void *ptr, h_type htype,
 			  sprintf(str, "%20d", *(short *)ptr);
 #ifdef HAVE_LONG_LONG_INT
 			else
-			  sprintf(str, "%20lld", *(LONGLONG *)ptr);
+			  sprintf(str, "%20lld", *(SLONGLONG *)ptr);
 #endif
 			break;
 

src/fits/fitswrite.c

@@ -7,7 +7,7 @@
 *
 *	This file part of:	AstrOmatic FITS/LDAC library
 *
-*	Copyright:		(C) 1995-2010 Emmanuel Bertin -- IAP/CNRS/UPMC
+*	Copyright:		(C) 1995-2012 Emmanuel Bertin -- IAP/CNRS/UPMC
 *
 *	License:		GNU General Public License
 *
@@ -23,7 +23,7 @@
 *	along with AstrOmatic software.
 *	If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		09/10/2010
+*	Last modified:		13/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -88,7 +88,7 @@ INPUT	pointer to the catalog structure,
 OUTPUT	-.
 NOTES	-.
 AUTHOR	E. Bertin (IAP & Leiden observatory)
-VERSION	02/11/2009
+VERSION	13/06/2012
  ***/
 void	save_tab(catstruct *cat, tabstruct *tab)
 
@@ -97,7 +97,7 @@ void	save_tab(catstruct *cat, tabstruct *tab)
    keystruct	*key;
    tabstruct	*keytab;
    KINGSIZE_T	tabsize;
-   KINGLONG	size;
+   long		size;
    int		b,j,k,o, nbytes,nkey,nobj,spoonful,
 		tabflag, larrayin,larrayout;
    char		*buf, *inbuf, *outbuf, *fptr,*ptr;
@@ -395,7 +395,7 @@ INPUT	Output stream
 OUTPUT	-.
 NOTES	-.
 AUTHOR	E. Bertin (IAP & Leiden observatory)
-VERSION	02/11/2009
+VERSION	13/06/2012
  ***/
 void	print_obj(FILE *stream, tabstruct *tab)
 
@@ -435,7 +435,7 @@ void	print_obj(FILE *stream, tabstruct *tab)
             putc(' ', stream);
           break;
         case T_LONGLONG:
-          fprintf(stream, *key->printf?key->printf:"%lld", *(LONGLONG *)ptr);
+          fprintf(stream, *key->printf?key->printf:"%lld", *(SLONGLONG *)ptr);
           if (i)
             putc(' ', stream);
           break;
@@ -477,7 +477,7 @@ INPUT	Output stream
 OUTPUT	-.
 NOTES	-.
 AUTHOR	G. Tissier & E.Bertin (IAP)
-VERSION	02/11/2009
+VERSION	13/06/2012
  ***/
 void	voprint_obj(FILE *stream, tabstruct *tab)
 
@@ -521,7 +521,7 @@ void	voprint_obj(FILE *stream, tabstruct *tab)
             putc(' ', stream);
           break;
         case T_LONGLONG:
-          fprintf(stream, *key->printf?key->printf:"%lld", *(LONGLONG *)ptr);
+          fprintf(stream, *key->printf?key->printf:"%lld", *(SLONGLONG *)ptr);
           if (i)
             putc(' ', stream);
           break;

src/fitswcs.c

@@ -23,7 +23,7 @@
 *	along with AstrOmatic software.
 *	If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		12/04/2012
+*	Last modified:		18/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -328,7 +328,7 @@ INPUT	tab structure.
 OUTPUT	-.
 NOTES	-.
 AUTHOR	E. Bertin (IAP)
-VERSION	22/07/2011
+VERSION	18/06/2012
  ***/
 wcsstruct	*read_wcs(tabstruct *tab)
 
@@ -439,6 +439,8 @@ wcsstruct	*read_wcs(tabstruct *tab)
 /*-- Coordinate reference frame */
 /*-- Search for an observation date expressed in Julian days */
     FITSREADF(buf, "MJD-OBS ", date, -1.0);
+    if (date<0.0)
+      FITSREADF(buf, "MJDSTART", date, -1.0);
 /*-- Precession date (defined from Ephemerides du Bureau des Longitudes) */
 /*-- in Julian years from 2000.0 */
     if (date>0.0)
@@ -744,15 +746,16 @@ INPUT	Proposed projection code name.
 OUTPUT	RETURN_OK if projection is supported, RETURN_ERROR otherwise.
 NOTES	-.
 AUTHOR	E. Bertin (IAP)
-VERSION	12/04/2012
+VERSION	14/06/2012
  ***/
 int	wcs_supproj(char *name)
 
   {
    char	projcode[28][5] =
-	{"TAN", "TPV", "AZP", "SIN", "STG", "ARC", "ZPN", "ZEA", "AIR", "CYP", "CAR",
-	"MER", "CEA", "COP", "COD", "COE", "COO", "BON", "PCO", "GLS", "PAR",
-	"AIT", "MOL", "CSC", "QSC", "TSC", "TNX", "NONE"};
+	{"TAN", "TPV", "AZP", "SIN", "STG", "ARC", "ZPN", "ZEA", "AIR", "CYP",
+	"CAR", "MER", "CEA", "COP", "COD", "COE", "COO", "BON", "PCO", "GLS",
+	"PAR", "AIT", "MOL", "CSC", "QSC", "TSC", "TNX", "NONE"};
+
    int	i;
 
   for (i=0; i<28; i++)
@@ -770,7 +773,7 @@ INPUT	WCS structure.
 OUTPUT	-.
 NOTES	.
 AUTHOR	E. Bertin (IAP)
-VERSION	06/11/2003
+VERSION	14/06/2012
  ***/
 void	invert_wcs(wcsstruct *wcs)
 
@@ -789,7 +792,8 @@ void	invert_wcs(wcsstruct *wcs)
   lat = wcs->wcsprm->lat;
   if (!strcmp(wcs->wcsprm->pcode, "TNX"))
     tnxflag = 1;
-  else if (!strcmp(wcs->wcsprm->pcode, "TAN")
+  else if ((strcmp(wcs->wcsprm->pcode, "TAN")
+	|| !strcmp(wcs->wcsprm->pcode, "TPV"))
 		&& (wcs->projp[1+lng*100] || wcs->projp[1+lat*100]))
     tnxflag = 0;
   else
@@ -1652,13 +1656,12 @@ OUTPUT	Determinant over spatial coordinates (ratio of pixel areas),
 NOTES   Memory must have been allocated (naxis*naxis*sizeof(double)) for the
         Jacobian array.
 AUTHOR	E. Bertin (IAP)
-VERSION	31/03/2012
+VERSION	12/06/2012
  ***/
 double	wcs_rawtoraw(wcsstruct *wcsin, wcsstruct *wcsout,
 		double *pixposin, double *pixposout, double *jacob)
   {
-   double	pixpos0[NAXIS], pixpos2[NAXIS], wcspos[NAXIS],
-		dpos;
+   double	pixpos0[NAXIS], pixpos2[NAXIS], wcspos[NAXIS];
    int		i,j, lng,lat,naxis;
 
   naxis = wcsin->naxis;

src/fitswcs.h

@@ -23,7 +23,7 @@
 *	along with AstrOmatic software.
 *	If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		31/03/2012
+*	Last modified:		14/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -48,7 +48,7 @@
 #define		WCS_NGRIDPOINTS	12	/* Number of WCS grid points / axis */
 #define		WCS_NGRIDPOINTS2	(WCS_NGRIDPOINTS*WCS_NGRIDPOINTS)
 #define		WCS_INVMAXDEG	9	/* Maximum inversion polynom degree */
-#define		WCS_INVACCURACY	0.04	/* Maximum inversion error (pixels) */
+#define		WCS_INVACCURACY	0.001	/* Maximum inversion error (pixels) */
 #define		WCS_NRANGEPOINTS 32	/* Number of WCS range points / axis */
 
 /*-------------------------------- typedefs ---------------------------------*/

src/makeit.c

@@ -7,7 +7,7 @@
 *
 *	This file part of:	SExtractor
 *
-*	Copyright:		(C) 1993-2011 Emmanuel Bertin -- IAP/CNRS/UPMC
+*	Copyright:		(C) 1993-2012 Emmanuel Bertin -- IAP/CNRS/UPMC
 *
 *	License:		GNU General Public License
 *
@@ -22,7 +22,7 @@
 *	You should have received a copy of the GNU General Public License
 *	along with SExtractor. If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		02/11/2011
+*	Last modified:		13/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -78,7 +78,7 @@ void	makeit()
    unsigned int		modeltype;
    int			nflag[MAXFLAG], nparam2[2],
 			i, nok, ntab, next, ntabmax, forcextflag,
-			nima0,nima1, nweight0,nweight1, npat;
+			nima0,nima1, nweight0,nweight1, npat,npat0;
 
 /* Install error logging */
   error_installfunc(write_error);
@@ -110,14 +110,15 @@ void	makeit()
 
   if (prefs.psf_flag)
     {
+/*-- Read the first PSF extension to set up stuff such as context parameters */
     NFPRINTF(OUTPUT, "Reading PSF information");
     if (prefs.dpsf_flag)
       {
-      thedpsf = psf_load(prefs.psf_name[0]); 
-      thepsf = psf_load(prefs.psf_name[1]);
+      thedpsf = psf_load(prefs.psf_name[0],0); 
+      thepsf = psf_load(prefs.psf_name[1],0);
       }
     else
-      thepsf = psf_load(prefs.psf_name[0]); 
+      thepsf = psf_load(prefs.psf_name[0],0); 
  /*-- Need to check things up because of PSF context parameters */
     updateparamflags();
     useprefs();
@@ -146,14 +147,14 @@ void	makeit()
       thedprofit = profit_init(thedpsf, modeltype);
     if (prefs.pattern_flag)
       {
-      npat = prefs.prof_disk_patternvectorsize;
-      if (npat<prefs.prof_disk_patternmodvectorsize)
-        npat = prefs.prof_disk_patternmodvectorsize;
-      if (npat<prefs.prof_disk_patternargvectorsize)
-        npat = prefs.prof_disk_patternargvectorsize;
+      npat0 = prefs.prof_disk_patternvectorsize;
+      if (npat0<prefs.prof_disk_patternmodvectorsize)
+        npat0 = prefs.prof_disk_patternmodvectorsize;
+      if (npat0<prefs.prof_disk_patternargvectorsize)
+        npat0 = prefs.prof_disk_patternargvectorsize;
 /*---- Do a copy of the original number of pattern components */
-      prefs.prof_disk_patternncomp = npat;
-      pattern = pattern_init(theprofit, prefs.pattern_type, npat);
+      prefs.prof_disk_patternncomp = npat0;
+      pattern = pattern_init(theprofit, prefs.pattern_type, npat0);
       if (FLAG(obj2.prof_disk_patternvector))
         {
         npat = pattern->size[2];
@@ -180,8 +181,10 @@ void	makeit()
       }
     QPRINTF(OUTPUT, "\n");
     if (FLAG(obj2.prof_concentration)|FLAG(obj2.prof_concentration))
+      {
       thepprofit = profit_init(thepsf, MODEL_DIRAC);
       theqprofit = profit_init(thepsf, MODEL_EXPONENTIAL);
+      }
 #else
     error(EXIT_FAILURE,
 		"*Error*: model-fitting is not supported in this build.\n",
@@ -229,6 +232,7 @@ void	makeit()
 /* Check if a specific extension should be loaded */
   if ((nima0=selectext(prefs.image_name[0])) != RETURN_ERROR)
     {
+printf("%d\n", nima0);
     forcextflag = 1;
     ntabmax = next = 1;
     }
@@ -448,6 +452,48 @@ void	makeit()
         if ((check=prefs.check[i]))
           reinitcheck(field, check);
 
+    if (nok || forcextflag)
+      {
+      if (prefs.psf_flag)
+        {
+/*------ Read other PSF extensions */
+        NFPRINTF(OUTPUT, "Reading PSF information");
+        psf_end(thepsf, thepsfit);
+        if (prefs.dpsf_flag)
+          {
+          psf_end(thedpsf, thedpsfit);
+          thedpsf = psf_load(prefs.psf_name[0], nima0<0? nok:nima0); 
+          thepsf = psf_load(prefs.psf_name[1], nima1<0? nok:nima1);
+          }
+        else
+          thepsf = psf_load(prefs.psf_name[0],nima0<0? nok:nima0); 
+        }
+
+      if (prefs.prof_flag)
+        {
+/*------ Create profiles at full resolution */
+        profit_end(theprofit);
+        theprofit = profit_init(thepsf, modeltype);
+        if (prefs.dprof_flag)
+          {
+          profit_end(thedprofit);
+          thedprofit = profit_init(thedpsf, modeltype);
+          }
+        if (prefs.pattern_flag)
+          {
+          pattern = pattern_init(theprofit, prefs.pattern_type, npat0);
+          pattern_end(pattern);
+          }
+        if (FLAG(obj2.prof_concentration)|FLAG(obj2.prof_concentration))
+          {
+          profit_end(thepprofit);
+          profit_end(theqprofit);
+          thepprofit = profit_init(thepsf, MODEL_DIRAC);
+          theqprofit = profit_init(thepsf, MODEL_EXPONENTIAL);
+          }
+        }
+      }
+
 /*-- Initialize PSF contexts and workspace */
     if (prefs.psf_flag)
       {

src/psf.c

@@ -7,7 +7,7 @@
 *
 *	This file part of:	SExtractor
 *
-*	Copyright:		(C) 1998-2011 Emmanuel Bertin -- IAP/CNRS/UPMC
+*	Copyright:		(C) 1998-2012 Emmanuel Bertin -- IAP/CNRS/UPMC
 *
 *	License:		GNU General Public License
 *
@@ -22,7 +22,7 @@
 *	You should have received a copy of the GNU General Public License
 *	along with SExtractor. If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		26/10/2011
+*	Last modified:		13/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -116,7 +116,7 @@ void	psf_end(psfstruct *psf, psfitstruct *psfit)
 /*
 Read the PSF data from a FITS file.
 */
-psfstruct	*psf_load(char *filename)
+psfstruct	*psf_load(char *filename, int ext)
   {
    static objstruct	saveobj;
    static obj2struct	saveobj2;
@@ -126,7 +126,7 @@ psfstruct	*psf_load(char *filename)
    keystruct		*key;
    char			*head, *ci,*co;
    int			deg[POLY_MAXDIM], group[POLY_MAXDIM], ndim, ngroup,
-			i,k;
+			e,i,k;
 
 /* Open the cat (well it is not a "cat", but simply a FITS file */
   if (!(cat = read_cat(filename)))
@@ -141,7 +141,10 @@ psfstruct	*psf_load(char *filename)
   else
     strcpy(psf->name, filename);
 
-  if (!(tab = name_to_tab(cat, "PSF_DATA", 0)))
+  tab = cat->tab;
+  for (i=cat->ntab, e=ext; i-- && (strcmp("PSF_DATA",tab->extname) || e--);
+	tab = tab->nexttab);
+  if (i<0)
     error(EXIT_FAILURE, "*Error*: PSF_DATA table not found in catalog ",
 	filename);
 

src/psf.h

@@ -7,7 +7,7 @@
 *
 *	This file part of:	SExtractor
 *
-*	Copyright:		(C) 1998-2011 Emmanuel Bertin -- IAP/CNRS/UPMC
+*	Copyright:		(C) 1998-2012 Emmanuel Bertin -- IAP/CNRS/UPMC
 *
 *	License:		GNU General Public License
 *
@@ -22,7 +22,7 @@
 *	You should have received a copy of the GNU General Public License
 *	along with SExtractor. If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		26/10/2011
+*	Last modified:		13/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -128,7 +128,7 @@ extern double	*compute_gradient (float *weight,int width, int height,
 			float *masks, double *pm),
 		psf_fwhm(psfstruct *psf);
 
-extern psfstruct	*psf_load(char *filename);
+extern psfstruct	*psf_load(char *filename, int ext);
 
 extern void	pc_end(pcstruct *pc),
 		pc_fit(psfstruct *psf, float *data, float *weight,

src/readimage.c

@@ -22,7 +22,7 @@
 *	You should have received a copy of the GNU General Public License
 *	along with SExtractor. If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		04/06/2012
+*	Last modified:		26/06/2012
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -258,7 +258,7 @@ void	readimagehead(picstruct *field)
   tab = field->tab;
 
   if(tab->naxis < 2)
-    error(EXIT_FAILURE, field->filename, " does NOT contain 2D-data!");
+    error(EXIT_FAILURE, field->filename, " does NOT contain image data!");
 
 /*---------------------------- Basic keywords ------------------------------*/
   if (tab->bitpix != BP_BYTE

src/wcs/poly.c

@@ -23,7 +23,7 @@
 *	along with AstrOmatic software.
 *	If not, see <http://www.gnu.org/licenses/>.
 *
-*	Last modified:		30/08/2011
+*	Last modified:		20/12/2011
 *
 *%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
 
@@ -36,11 +36,16 @@
 #include	<stdlib.h>
 #include	<string.h>
 
-#include	"poly.h"
 #ifdef HAVE_ATLAS
-#include	ATLAS_LAPACK_H
+#include ATLAS_LAPACK_H
+#endif
+
+#ifdef HAVE_LAPACKE
+#include LAPACKE_H
 #endif
 
+#include	"poly.h"
+
 #define	QCALLOC(ptr, typ, nel) \
 		{if (!(ptr = (typ *)calloc((size_t)(nel),sizeof(typ)))) \
 		  qerror("Not enough memory for ", \
@@ -437,16 +442,16 @@ INPUT   Pointer to the (pseudo 2D) matrix of coefficients,
 OUTPUT  -.
 NOTES   -.
 AUTHOR  E. Bertin (IAP, Leiden observatory & ESO)
-VERSION 26/10/2010
+VERSION 20/12/2011
  ***/
 void	poly_solve(double *a, double *b, int n)
   {
-
-#ifdef HAVE_ATLAS
+#if defined(HAVE_LAPACKE)
+  LAPACKE_dposv(LAPACK_COL_MAJOR, 'L', n, 1, a, n, b, n);
+#elif defined(HAVE_ATLAS)
   clapack_dposv(CblasRowMajor, CblasUpper, n, 1, a, n, b, n);
 #else
-  if (cholsolve(a,b,n))
-    qerror("*Error*: singular matrix found ", "while deprojecting" );
+  cholsolve(a,b,n);
 #endif
 
   return;
@@ -454,7 +459,7 @@ void	poly_solve(double *a, double *b, int n)
 
 
 /****** cholsolve *************************************************************
-PROTO	void cholsolve(double *a, double *b, int n)
+PROTO	int cholsolve(double *a, double *b, int n)
 PURPOSE	Solve a system of linear equations, using Cholesky decomposition.
 INPUT	Pointer to the (pseudo 2D) matrix of coefficients,
 	pointer to the 1D column vector,