Commit 2166c80e authored by Zhang Xin's avatar Zhang Xin
Browse files

pep8

parent 45682570
Loading
Loading
Loading
Loading
Loading
+19 −13
Original line number Diff line number Diff line
@@ -337,11 +337,13 @@ class Galaxy(MockObject):
                        chip, pos_img_local=pos_img_local, bandNo=i+1, galsimGSObject=True, g_order=order, grating_split_pos=grating_split_pos)
                    star_p = galsim.Convolve(psf, gal)
                    if nnx == 0:
                        galImg = star_p.drawImage(wcs=chip_wcs_local, offset=offset)
                        galImg = star_p.drawImage(
                            wcs=chip_wcs_local, offset=offset)
                        nnx = galImg.xmax - galImg.xmin + 1
                        nny = galImg.ymax - galImg.ymin + 1
                    else:
                        galImg = star_p.drawImage(nx = nnx, ny = nny, wcs=chip_wcs_local, offset=offset)
                        galImg = star_p.drawImage(
                            nx=nnx, ny=nny, wcs=chip_wcs_local, offset=offset)
                    galImg.setOrigin(0, 0)
                    # n1 = np.sum(np.isinf(galImg.array))
                    # n2 = np.sum(np.isnan(galImg.array))
@@ -397,7 +399,8 @@ class Galaxy(MockObject):
                                       isAlongY=0,
                                       flat_cube=flat_cube)

                self.addSLStoChipImage(sdp=sdp_p1, chip=chip, xOrderSigPlus = xOrderSigPlus, local_wcs=chip_wcs_local)
                self.addSLStoChipImage(
                    sdp=sdp_p1, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
                # pos_shear = self.addSLStoChipImageWithPSF(sdp=sdp_p1, chip=chip, pos_img_local=[xcenter_p1, ycenter_p1],
                #                                           psf_model=psf_model, bandNo=i + 1,
                #                                           grating_split_pos=grating_split_pos,
@@ -423,7 +426,8 @@ class Galaxy(MockObject):
                                       isAlongY=0,
                                       flat_cube=flat_cube)

                self.addSLStoChipImage(sdp=sdp_p2, chip=chip, xOrderSigPlus = xOrderSigPlus, local_wcs=chip_wcs_local)
                self.addSLStoChipImage(
                    sdp=sdp_p2, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
                # pos_shear = self.addSLStoChipImageWithPSF(sdp=sdp_p2, chip=chip, pos_img_local=[xcenter_p2, ycenter_p2],
                #                                           psf_model=psf_model, bandNo=i + 1,
                #                                           grating_split_pos=grating_split_pos,
@@ -439,7 +443,8 @@ class Galaxy(MockObject):
                                    conf=chip.sls_conf[1],
                                    isAlongY=0,
                                    flat_cube=flat_cube)
                self.addSLStoChipImage(sdp=sdp, chip=chip, xOrderSigPlus = xOrderSigPlus, local_wcs=chip_wcs_local)
                self.addSLStoChipImage(
                    sdp=sdp, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
                # pos_shear = self.addSLStoChipImageWithPSF(sdp=sdp, chip=chip, pos_img_local=[x_nominal, y_nominal],
                #                                           psf_model=psf_model, bandNo=i + 1,
                #                                           grating_split_pos=grating_split_pos,
@@ -453,7 +458,8 @@ class Galaxy(MockObject):
                                    conf=chip.sls_conf[0],
                                    isAlongY=0,
                                    flat_cube=flat_cube)
                self.addSLStoChipImage(sdp=sdp, chip=chip, xOrderSigPlus = xOrderSigPlus, local_wcs=chip_wcs_local)
                self.addSLStoChipImage(
                    sdp=sdp, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
                # pos_shear = self.addSLStoChipImageWithPSF(sdp=sdp, chip=chip, pos_img_local=[x_nominal, y_nominal],
                #                                           psf_model=psf_model, bandNo=i + 1,
                #                                           grating_split_pos=grating_split_pos,
+40 −31
Original line number Diff line number Diff line
@@ -257,15 +257,18 @@ class MockObject(object):
                    continue

                # orders = {'A': 'order1', 'B': 'order0', 'C': 'order2', 'D': 'order-1', 'E': 'order-2'}
                orders = {'A': 'order1', 'B': 'order0', 'C': 'order0', 'D': 'order0', 'E': 'order0'}
                orders = {'A': 'order1', 'B': 'order0',
                          'C': 'order0', 'D': 'order0', 'E': 'order0'}
                gratingN = chip_utils.getChipSLSGratingID(chip.chipID)[1]
                if pos_img_local[0] < grating_split_pos:
                    gratingN = chip_utils.getChipSLSGratingID(chip.chipID)[0]


                chip.img_stack[gratingN][orders[k]]['w' + str(bandNo)].setOrigin(0, 0)
                chip.img_stack[gratingN][orders[k]]['w' + str(bandNo)][bounds] = chip.img_stack[gratingN][orders[k]]['w' + str(bandNo)][bounds] + specImg[bounds]
                chip.img_stack[gratingN][orders[k]]['w' + str(bandNo)].setOrigin(chip.bound.xmin, chip.bound.ymin)
                chip.img_stack[gratingN][orders[k]
                                         ]['w' + str(bandNo)].setOrigin(0, 0)
                chip.img_stack[gratingN][orders[k]]['w' + str(
                    bandNo)][bounds] = chip.img_stack[gratingN][orders[k]]['w' + str(bandNo)][bounds] + specImg[bounds]
                chip.img_stack[gratingN][orders[k]]['w' +
                                                    str(bandNo)].setOrigin(chip.bound.xmin, chip.bound.ymin)

        else:
            for k, v in spec_orders.items():
@@ -330,9 +333,11 @@ class MockObject(object):
                specImg.wcs = local_wcs
                specImg.setOrigin(origin_order_x, origin_order_y)
                try:
                    specImg = psf_model.get_PSF_AND_convolve_withsubImg(chip, cutImg=specImg, pos_img_local=pos_img_local, bandNo=bandNo, g_order=k, grating_split_pos=grating_split_pos)
                    specImg = psf_model.get_PSF_AND_convolve_withsubImg(
                        chip, cutImg=specImg, pos_img_local=pos_img_local, bandNo=bandNo, g_order=k, grating_split_pos=grating_split_pos)
                except:
                    psf, pos_shear = psf_model.get_PSF(chip=chip, pos_img=pos_img)
                    psf, pos_shear = psf_model.get_PSF(
                        chip=chip, pos_img=pos_img)

                    psf_img = psf.drawImage(nx=100, ny=100, wcs=local_wcs)

@@ -441,11 +446,13 @@ class MockObject(object):
                    # star_p = galsim.Convolve(psf, star)
                    star_p = psf.withFlux(tel.pupil_area * exptime)
                    if nnx == 0:
                        starImg = star_p.drawImage(wcs=chip_wcs_local, offset=offset)
                        starImg = star_p.drawImage(
                            wcs=chip_wcs_local, offset=offset)
                        nnx = starImg.xmax - starImg.xmin + 1
                        nny = starImg.ymax - starImg.ymin + 1
                    else:
                        starImg = star_p.drawImage(nx = nnx, ny = nny, wcs=chip_wcs_local, offset=offset)
                        starImg = star_p.drawImage(
                            nx=nnx, ny=nny, wcs=chip_wcs_local, offset=offset)
                    # n1 = np.sum(np.isinf(starImg.array))
                    # n2 = np.sum(np.isnan(starImg.array))
                    # if n1>0 or n2 > 0:
@@ -463,7 +470,6 @@ class MockObject(object):
                for order in ["A", "B", "C", "D", "E"]:
                    starImg_List.append(starImg)

            
            # psf_tmp = galsim.Gaussian(sigma=0.002)
            # star = galsim.Convolve(psf_tmp, star)

@@ -498,12 +504,12 @@ class MockObject(object):
                                       isAlongY=0,
                                       flat_cube=flat_cube)

                self.addSLStoChipImage(sdp=sdp_p1, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
                self.addSLStoChipImage(
                    sdp=sdp_p1, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
                # pos_shear = self.addSLStoChipImageWithPSF(sdp=sdp_p1, chip=chip, pos_img_local=[xcenter_p1, ycenter_p1],
                #                                           psf_model=psf_model, bandNo=i+1, grating_split_pos=grating_split_pos,
                #                                           local_wcs=chip_wcs_local, pos_img=pos_img)


                star_p2s = []
                for starImg in starImg_List:

@@ -524,7 +530,8 @@ class MockObject(object):
                                       isAlongY=0,
                                       flat_cube=flat_cube)

                self.addSLStoChipImage(sdp=sdp_p2, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
                self.addSLStoChipImage(
                    sdp=sdp_p2, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
                # pos_shear = self.addSLStoChipImageWithPSF(sdp=sdp_p2, chip=chip, pos_img_local=[xcenter_p2, ycenter_p2],
                #                                           psf_model=psf_model, bandNo=i + 1, grating_split_pos=grating_split_pos,
                #                                           local_wcs=chip_wcs_local, pos_img=pos_img)
@@ -539,7 +546,8 @@ class MockObject(object):
                                    conf=chip.sls_conf[1],
                                    isAlongY=0,
                                    flat_cube=flat_cube)
                self.addSLStoChipImage(sdp=sdp, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
                self.addSLStoChipImage(
                    sdp=sdp, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
                # pos_shear = self.addSLStoChipImageWithPSF(sdp=sdp, chip=chip, pos_img_local=[x_nominal, y_nominal],
                #                                           psf_model=psf_model, bandNo=i + 1, grating_split_pos=grating_split_pos,
                #                                           local_wcs=chip_wcs_local, pos_img=pos_img)
@@ -552,7 +560,8 @@ class MockObject(object):
                                    conf=chip.sls_conf[0],
                                    isAlongY=0,
                                    flat_cube=flat_cube)
                self.addSLStoChipImage(sdp=sdp, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
                self.addSLStoChipImage(
                    sdp=sdp, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
                # pos_shear = self.addSLStoChipImageWithPSF(sdp=sdp, chip=chip, pos_img_local=[x_nominal, y_nominal],
                #                                           psf_model=psf_model, bandNo=i + 1, grating_split_pos=grating_split_pos,
                #                                           local_wcs=chip_wcs_local, pos_img=pos_img)
+2 −2
Original line number Diff line number Diff line
@@ -30,7 +30,7 @@ NPSF = 900 # ***# 30*30
PIX_SIZE_MICRON = 5.  # ***# in microns


### find neighbors-KDtree###
# find neighbors-KDtree
# def findNeighbors(tx, ty, px, py, dr=0.1, dn=1, OnlyDistance=True):
#     """
#     find nearest neighbors by 2D-KDTree
@@ -212,7 +212,7 @@ PIX_SIZE_MICRON = 5. # ***# in microns
#     return psfMaker


### define PSFInterp###
# define PSFInterp
class PSFInterpSLS(PSFModel):
    def __init__(self, chip, filt, PSF_data_prefix="", sigSpin=0, psfRa=0.15, pix_size=0.005):
        if LOG_DEBUG:
+1 −1
Original line number Diff line number Diff line
@@ -60,7 +60,7 @@ class Chip(object):
        if logger is not None:
            logger.info(
                "    Construct the wcs of the entire image mosaic using Gnomonic/TAN projection")
        if (xcen == None) or (ycen == None):
        if (xcen is None) or (ycen is None):
            xcen = self.cen_pix_x
            ycen = self.cen_pix_y
        if pix_scale == None: