update fitsTest

Catalog/testCat_fits.py

@@ -34,8 +34,8 @@ NSIDE = 128
 class Catalog(CatalogBase):
     def __init__(self, config, chip, pointing, chip_output, filt, **kwargs):
         super().__init__()
-        self.cat_dir = os.path.join(config["data_dir"], config["catalog_options"]["input_path"]["cat_dir"])
-        self.seed_Av = config["catalog_options"]["seed_Av"]
+        self.cat_dir = config["catalog_options"]["input_path"]["cat_dir"]
+        self.seed_Av = 121212 #config["catalog_options"]["seed_Av"]
 
         # (TEST)
         self.cosmo = FlatLambdaCDM(H0=67.66, Om0=0.3111)
@@ -46,6 +46,8 @@ class Catalog(CatalogBase):
 
         with pkg_resources.path('Catalog.data', 'SLOAN_SDSS.g.fits') as filter_path:
             self.normF_star = Table.read(str(filter_path))
+        with pkg_resources.path('Catalog.data', 'lsst_throuput_g.fits') as filter_path:
+            self.normF_galaxy = Table.read(str(filter_path))
         
         self.config = config
         self.chip = chip
@@ -58,16 +60,9 @@ class Catalog(CatalogBase):
             self.stamp_path = os.path.join(self.cat_dir, stamp_file)
             #self.stamp_SED_path = os.path.join(config["data_dir"], config["SED_templates_path"]["stamp_SED"]) ###shoule be stamp-SED
             #self._load_SED_lib_stamps() ###shoule be stamp-SED
-            self.tempSed_gal, self.tempRed_gal = seds("galaxy.list", seddir="/share/simudata/CSSOSDataProductsSims/data/Templates/Galaxy/") #only for test
-        
-        if "rotateEll" in config["catalog_options"]:
-            self.rotation = float(int(config["catalog_options"]["rotateEll"]/45.))
-        else:
-            self.rotation = 0.
+            self.tempSed_gal, self.tempRed_gal = seds("galaxy.list", seddir="/public/home/chengliang/CSSOSDataProductsSims/testCats/Templates/Galaxy/") #only for test
 
-        # Update output .cat header with catalog specific output columns
         self._add_output_columns_header()
-
         self._get_healpix_list()
         self._load()
     
@@ -99,19 +94,21 @@ class Catalog(CatalogBase):
 
     def load_norm_filt(self, obj):
         if obj.type == "stamp":
-            #return self.normF_galaxy  ###normalize_filter for stamp
-            return None
+            return self.normF_galaxy  ###normalize_filter for stamp
         else:
             return None
 
     def _load_stamps(self, stamps, pix_id=None):
+        print("debug:: load_stamps")
         nstamps = len(stamps['filename'])
         self.rng_sedGal = random.Random()
-        self.rng_sedGal.seed(pix_id) # Use healpix index as the random seed
+        self.rng_sedGal.seed(float(pix_id)) # Use healpix index as the random seed
         self.ud = galsim.UniformDeviate(pix_id)
 
         for istamp in range(nstamps):
+            print("debug::", istamp)
             fitsfile = os.path.join(self.cat_dir, "stampCats/"+stamps['filename'][istamp].decode('utf-8'))
+            print("debug::", istamp, fitsfile)
             hdu=fitsio.open(fitsfile)
 
             param = self.initialize_param()
@@ -167,6 +164,7 @@ class Catalog(CatalogBase):
             param['redden'] = self.tempRed_gal[param['sed_type']]
             param['av'] = 0.0
             param['redden'] = 0
+            param['mu'] = 1
 
             #param["CSSTmag"]= True
             #param["mag_r"] = 20.
@@ -183,9 +181,12 @@ class Catalog(CatalogBase):
 
         if "stamp_cat" in self.config["catalog_options"]["input_path"] and self.config["catalog_options"]["input_path"]["stamp_cat"] and self.config["catalog_options"]["stamp_yes"]:
             stamps_cat = h5.File(self.stamp_path, 'r')['Stamps']
+            print("debug::",stamps_cat.keys())
+
             for pix in self.pix_list:
                 try:
                     stamps = stamps_cat[str(pix)]
+                    print("debug::",stamps.keys())
                     self._load_stamps(stamps, pix_id=pix)
                     del stamps
                 except Exception as e:

config/config_overall_newStar_fits.yaml

+---
+###############################################
+#
+#  Configuration file for CSST simulation
+#           Overall settings
+#  CSST-Sim Group, 2024/01/08
+#
+###############################################
+
+# Base diretories and naming setup
+# can add some of the command-line arguments here as well;
+# ok to pass either way or both, as long as they are consistent
+work_dir: "/public/share/yangxuliu/CSSOSDataProductsSims/outputs_C9Tests/"
+run_name: "testRun0"
+
+# Project cycle and run counter are used to name the outputs
+project_cycle: 9
+run_counter: 1
+
+# Run options
+run_option:
+  # Output catalog only?
+  # If yes, no imaging simulation will be run. Only the catalogs
+  # of corresponding footprints will be generated.
+  out_cat_only: NO
+
+###############################################
+# Catalog setting
+###############################################
+# Configure the input catalog: options should be implemented
+# in the corresponding (user defined) 'Catalog' class
+catalog_options:
+  input_path:
+    cat_dir: "/public/home/chengliang/CSSOSDataProductsSims/testCats/"
+    # star_cat: "star_catalog/"
+    # galaxy_cat: "qsocat/cat2CSSTSim_bundle-50sqDeg/"
+    stamp_cat: "stampCatsIndex.hdf5"
+
+  SED_templates_path:
+    # star_SED:
+    # galaxy_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/sedlibs/"
+    # AGN_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/qsocat/qsosed/"
+    # stamp_SED:
+
+  # Only simulate stars?
+  star_only: NO
+
+  # Only simulate galaxies?
+  galaxy_only: NO
+
+  # With stamp?
+  stamp_yes: YES
+
+  # rotate galaxy ellipticity
+  rotateEll: 0. # [degree]
+
+###############################################
+# Observation setting
+###############################################
+obs_setting:
+  # (Optional) a file of point list 
+  # if you just want to run default pointing:
+  # - pointing_dir: null
+  # - pointing_file: null
+  pointing_file: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/pointing50_C9/pointing_50_1_n.dat"
+
+  obs_config_file: "/public/home/chengliang/CSSOSDataProductsSims/csst_msc_sim/config/obs_config_SCI_WIDE_phot.yaml"
+
+  # Run specific pointing(s):
+  # - give a list of indexes of pointings: [ip_1, ip_2...]
+  # - run all pointings: null
+  # Note: only valid when a pointing list is specified
+  run_pointings: [0]
+
+  # Whether to enable astrometric modeling
+  enable_astrometric_model: YES
+
+  # Cut by saturation magnitude in which band?
+  cut_in_band: "z"
+
+  # saturation magnitude margin
+  mag_sat_margin: -2.5
+  # mag_sat_margin: -15.
+
+  # limiting magnitude margin
+  mag_lim_margin: +1.0
+
+###############################################
+# PSF setting
+###############################################
+psf_setting:
+  
+  # Which PSF model to use:
+  # "Gauss": simple gaussian profile
+  # "Interp": Interpolated PSF from sampled ray-tracing data
+  psf_model: "Interp"
+
+  # PSF size [arcseconds]
+  # radius of 80% energy encircled
+  # NOTE: only valid for "Gauss" PSF
+  # psf_rcont: 0.15
+
+  # path to PSF data
+  # NOTE: only valid for "Interp" PSF
+  # PSF models for photometry survey simulation
+  psf_pho_dir: "/public/share/yangxuliu/CSSOSDataProductsSims/psfCube/set1_dynamic/"
+  # PSF models for slitless spectrum survey simulation
+  psf_sls_dir: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/SLS_PSF_PCA_fp/"
+
+###############################################
+# Shear setting
+###############################################
+
+shear_setting:
+  # Options to generate mock shear field:
+  # "constant": all galaxies are assigned a constant reduced shear
+  # "catalog": get shear values from catalog
+  shear_type: "constant"
+
+  # For constant shear field
+  reduced_g1: 0.
+  reduced_g2: 0.
+
+###############################################
+# Output options
+###############################################
+output_setting:
+  output_format:  "channels" # Whether to export as 16 channels (subimages) with pre- and over-scan ("image"/"channels")
+  shutter_output: NO # Whether to export shutter effect 16-bit image
+  prnu_output:    NO # Whether to export the PRNU (pixel-to-pixel flat-fielding) files
+
+###############################################
+# Random seeds
+###############################################
+random_seeds:
+  seed_poisson:         20210601  # Seed for Poisson noise
+  seed_CR:              20210317  # Seed for generating random cosmic ray maps
+  seed_flat:            20210101  # Seed for generating random flat fields
+  seed_prnu:            20210102  # Seed for photo-response non-uniformity
+  seed_gainNonUniform:  20210202  # Seed for gain nonuniformity
+  seed_biasNonUniform:  20210203  # Seed for bias nonuniformity
+  seed_rnNonUniform:    20210204  # Seed for readout-noise nonuniformity
+  seed_badcolumns:      20240309  # Seed for bad columns
+  seed_defective:       20210304  # Seed for defective (bad) pixels
+  seed_readout:         20210601  # Seed for read-out gaussian noise
+...