git init

LePhare/lib_mag/STAR_HDF.doc

+CONFIG_FILE      /Users/zhangxin/Work/SED_PRJ/superSim/LePhare//config/zphot_su.para
+LIB_TYPE         STAR
+LIB_NAME         LIB_STAR
+NUMBER_SED               154
+NUMBER_ROWS              154
+RECORD_LENGTH            104
+FILTER_FILE        candles.filt
+FILTERS          0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+MAG_TYPE         AB   
+AB_COR              1.572   -0.080    0.091    0.403    0.436    0.537    0.651    0.908    1.084    1.270
+FLUX_COR            1.000    1.000    1.000    1.000    1.000    1.000    1.000    1.000    1.000    1.000
+CREATION_DATE    Tue Jun 21 11:56:41 2022

LePhare/run_simul.sh

+cd $LEPHAREWORK
+
+mkdir lib_bin lib_mag filt
+
+$LEPHAREDIR/source/sedtolib -t S -c $LEPHAREWORK/config/zphot_su.para 
+
+$LEPHAREDIR/source/sedtolib -t Q -c $LEPHAREWORK/config/zphot_su.para  
+
+$LEPHAREDIR/source/sedtolib -t G -c $LEPHAREWORK/config/zphot_su.para 
+
+# more $LEPHAREWORK/lib_bin/LIB_CWW.doc 
+
+$LEPHAREDIR/source/filter -c $LEPHAREWORK/config/zphot_su.para  
+
+$LEPHAREDIR/source/mag_star -c $LEPHAREWORK/config/zphot_su.para
+
+$LEPHAREDIR/source/mag_gal -t Q -c $LEPHAREWORK/config/zphot_su.para
+
+$LEPHAREDIR/source/mag_gal -t G -c $LEPHAREWORK/config/zphot_su.para
+
+$LEPHAREDIR/source/zphota -c $LEPHAREWORK/config/zphot_su.para -CAT_IN /Users/zhangxin/Work/SED_PRJ/superSim/src/test.in -CAT_OUT /Users/zhangxin/Work/SED_PRJ/superSim/src/test.out

config/config_galsim.yaml

+
+### multi-color hight resolution image data
+data_dir: "/LePhare/superSim/simData/inputImageSample/"
+
+####### produce gal spec by Lepahre
+##True or False,
+##True: spec is exist
+##False: spec not exist, need produce
+spec_isExist: False
+##Lephare Work dir, config file and some pre-process data
+lePhareWorkDir: "/LePhare/superSim/LePhare/"
+##Lephare lib dan binary file dir
+lePhareDir: "/LePhare/lephare_dev/"
+##spec file dir
+spec_outDir: "/LePhare/superSim/Gal_test/lp_spec/"
+#######
+
+### mock data output dir
+img_outDir: "/LePhare/superSim/Gal_test/"
+
+### input galaxy catalog
+catFn: "/LePhare/superSim/simData/catalog/goodn_sample.fits"
+
+
+################# telescope information
+
+# "CSST", "EUCLID" or "ROMAN"
+tel: "CSST"
+# CSST: 'NUV','u','g','r','i','z','y'
+# EUCLID: 'VIS','NISP.Y','NISP.J','NISP.H'
+# ROMAN: 'F062','F087','F106','F129','F158','F184','F146','F213'
+fil: 'g'
+time_nexp: [150]
+nexp: [1]
+
+
+
+
+
+
+
+
+
+# ---
+# ###############################################
+# #
+# #  Configuration file for CSST simulation
+# #           Overall settings
+# #  CSST-Sim Group, 2024/01/08
+# #
+# ###############################################
+
+# # Base diretories and naming setup
+# # can add some of the command-line arguments here as well;
+# # ok to pass either way or both, as long as they are consistent
+# work_dir: "/public/home/fangyuedong/project/workplace/"
+# run_name: "ext_on"
+
+# # Project cycle and run counter are used to name the outputs
+# project_cycle: 9
+# run_counter: 1
+
+# # Run options
+# run_option:
+#   # Output catalog only?
+#   # If yes, no imaging simulation will be run. Only the catalogs
+#   # of corresponding footprints will be generated.
+#   out_cat_only: NO
+
+# ###############################################
+# # Catalog setting
+# ###############################################
+# # Configure the input catalog: options should be implemented
+# # in the corresponding (user defined) 'Catalog' class
+# catalog_options:
+#   input_path:
+#     cat_dir: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/"
+#     star_cat: "starcat_C9/"
+#     galaxy_cat: "qsocat/cat2CSSTSim_bundle-50sqDeg/"
+
+#   SED_templates_path:
+#     star_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/starcat_C9/"
+#     galaxy_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/sedlibs/"
+#     AGN_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/qsocat/qsosed/"
+
+#   # Only simulate stars?
+#   star_only: NO
+
+#   # Only simulate galaxies?
+#   galaxy_only: NO
+
+#   # rotate galaxy ellipticity
+#   rotateEll: 0. # [degree]
+
+#   # Whether to apply milky way extinction to galaxies
+#   enable_mw_ext_gal: YES
+#   planck_ebv_map: "/public/home/fangyuedong/project/ext_maps/planck/HFI_CompMap_ThermalDustModel_2048_R1.20.fits"
+
+# ###############################################
+# # Observation setting
+# ###############################################
+# obs_setting:
+#   # (Optional) a file of point list 
+#   # if you just want to run default pointing:
+#   # - pointing_dir: null
+#   # - pointing_file: null
+#   pointing_file: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/pointing50_C9/pointing_50_1_n.dat"
+
+#   obs_config_file: "/public/home/fangyuedong/project/csst_msc_sim/config/obs_config_SCI.yaml"
+
+#   # Run specific pointing(s):
+#   # - give a list of indexes of pointings: [ip_1, ip_2...]
+#   # - run all pointings: null
+#   # Note: only valid when a pointing list is specified
+#   run_pointings: [0, 1, 2, 3, 4]
+
+#   # Whether to enable astrometric modeling
+#   enable_astrometric_model: YES
+
+#   # Cut by saturation magnitude in which band?
+#   cut_in_band: "z"
+
+#   # saturation magnitude margin
+#   mag_sat_margin: -2.5
+#   # mag_sat_margin: -15.
+
+#   # limiting magnitude margin
+#   mag_lim_margin: +1.0
+
+# ###############################################
+# # PSF setting
+# ###############################################
+# psf_setting:
+  
+#   # Which PSF model to use:
+#   # "Gauss": simple gaussian profile
+#   # "Interp": Interpolated PSF from sampled ray-tracing data
+#   psf_model: "Interp"
+
+#   # PSF size [arcseconds]
+#   # radius of 80% energy encircled
+#   # NOTE: only valid for "Gauss" PSF
+#   # psf_rcont: 0.15
+
+#   # path to PSF data
+#   # NOTE: only valid for "Interp" PSF
+#   # PSF models for photometry survey simulation
+#   psf_pho_dir: "/public/share/yangxuliu/CSSOSDataProductsSims/dataC6/psfCube1"
+#   # PSF models for slitless spectrum survey simulation
+#   psf_sls_dir: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/SLS_PSF_PCA_fp/"
+
+# ###############################################
+# # Shear setting
+# ###############################################
+
+# shear_setting:
+#   # Options to generate mock shear field:
+#   # "constant": all galaxies are assigned a constant reduced shear
+#   # "catalog": get shear values from catalog
+#   shear_type: "constant"
+
+#   # For constant shear field
+#   reduced_g1: 0.
+#   reduced_g2: 0.
+
+# ###############################################
+# # Output options
+# ###############################################
+# output_setting:
+#   output_format:  "channels" # Whether to export as 16 channels (subimages) with pre- and over-scan ("image"/"channels")
+#   shutter_output: NO # Whether to export shutter effect 16-bit image
+#   prnu_output:    NO # Whether to export the PRNU (pixel-to-pixel flat-fielding) files
+
+# ###############################################
+# # Random seeds
+# ###############################################
+# random_seeds:
+#   seed_poisson:         20210601  # Seed for Poisson noise
+#   seed_CR:              20210317  # Seed for generating random cosmic ray maps
+#   seed_flat:            20210101  # Seed for generating random flat fields
+#   seed_prnu:            20210102  # Seed for photo-response non-uniformity
+#   seed_gainNonUniform:  20210202  # Seed for gain nonuniformity
+#   seed_biasNonUniform:  20210203  # Seed for bias nonuniformity
+#   seed_rnNonUniform:    20210204  # Seed for readout-noise nonuniformity
+#   seed_badcolumns:      20240309  # Seed for bad columns
+#   seed_defective:       20210304  # Seed for defective (bad) pixels
+#   seed_readout:         20210601  # Seed for read-out gaussian noise
+# ...

install.sh

+# conda create -n csstsim_py311 python==3.11
+###
+ # @Author: Zhang Xin zhangx@bao.ac.cn
+ # @Date: 2024-11-05 10:47:51
+ # @LastEditors: Zhang Xin zhangx@bao.ac.cn
+ # @LastEditTime: 2024-11-05 14:57:44
+ # @FilePath: /superSim_git/install.sh
+ # @Description: 这是默认设置,请设置`customMade`, 打开koroFileHeader查看配置 进行设置: https://github.com/OBKoro1/koro1FileHeader/wiki/%E9%85%8D%E7%BD%AE
+### 
+
+conda config --add channels conda-forge
+conda install numpy==1.26.4
+conda install cython==3.0.6
+conda install sep==1.2.1
+conda install mpi4py==3.1.6
+conda install -c conda-forge opencv
+python -m pip install astro-sedpy
+conda install matplotlib=3.8.0
+conda install photutils=1.11.0
+pip install -e .

lephare_docker/Dockerfile

+FROM --platform=linux/amd64 ubuntu:20.04
+
+LABEL maintainer="zhangx@bao.ac.cn"
+
+RUN apt-get update
+RUN apt-get install gcc -y
+RUN apt-get install make -y
+RUN apt install gfortran -y
+RUN apt install vim -y
+RUN gfortran --version
+COPY . /LePhare/
+WORKDIR /LePhare/lephare_dev/source/
+
+RUN pwd
+RUN make clean
+RUN make
+
+WORKDIR /LePhare
+RUN mkdir tmpData
+
+RUN export LEPHAREDIR=/LePhare/lephare_dev/
+RUN export LEPHAREWORK=/LePhare/tmpData/
+
+
+EXPOSE 8000
+
+

lephare_docker/lephare_dev/INSTALL

+###################################################################
+#                --- INSTALL ---
+###################################################################
+#   
+###  -1-     PATHNAME for LEPHARE                          ###
+#
+# LEPHAREDIR -> where goes the zphot tar file
+	   setenv LEPHAREDIR  /your_path/lephare_dev
+     OR    export LEPHAREDIR='/your_path/lephare_dev'
+ 
+# LEPHAREWORK -> where will go all the intermediate stuffs you will create 
+	   setenv LEPHAREWORK  /your_path/lepharework
+     OR    export LEPHAREWORK='/your_path/lepharework' 
+#
+#############################################################
+#  
+###  -2-    Tar files                                      ###
+# 
+           >  cd your_path
+	   >  tar -zxvf lephare_main.tar.gz
+           --> it will place the files in /your_path/lephare_dev/*
+          
+
+	(  idem for additional SED tar files if you want them
+	   >  cd your_path
+	   >  tar -zxvf   lephare_sed_gissel.tar.gz
+	   >  tar -zxvf   lephare_sed_pegase2.tar.gz
+	   >  tar -zxvf   lephare_sed_hyperz.tar.gz
+           --> it will place the files in /your_path/lephare_dev/* 
+	)
+#
+#############################################################
+#   
+###  -3a-     Compilation                                  ###
+#
+           >  cd $LEPHAREDIR/source
+ 	   >  make -f Makefile          (or make)
+	      -> change Makefile options if needed 
+       
+              -> If you want to recompile the programs :
+	   >  make -f Makefile clean 	(or make clean)
+	   >  make -f Makefile 	
+
+
+	 --> It will compile all the programs and 
+             it will create the subdirectories needed
+             inside  $LEPHAREWORK. 
+#
+###  -3b-    Create required subdirectories in $LEPHAREWORK  ###
+	      it can be also done separately with  :   
+	   >  make work 
+	
+		-> creates the following directories :
+                    $LEPHAREWORK/filt
+	            $LEPHAREWORK/lib_bin
+	            $LEPHAREWORK/lib_mag
+#
+#
+###  -4-  -->   It s ready         
+#
+#
+#	
+###################################################################
+#         --- COMMAND LINES  ---
+###################################################################
+#
+###################################################################
+###     ASCII SEDs LIST TO BE CONVERTED IN BINARY LIBRARY       ###
+###################################################################
+#
+#  Binary Library for STARs 
+	$LEPHAREDIR/source/sedtolib -c $LEPHAREDIR/config/zphot.para -t S 
+#  Binary Library for QSO ns 
+	$LEPHAREDIR/source/sedtolib -c $LEPHAREDIR/config/zphot.para -t Q 
+#  Binary Library for GALAXIEs 
+	$LEPHAREDIR/source/sedtolib -c $LEPHAREDIR/config/zphot.para -t G 
+#
+#
+###################################################################
+###                 FILTER  FILE  CREATION                      ### 
+###################################################################
+# 
+# create a unique file with all transmission curves to be used 
+	$LEPHAREDIR/source/filter -c $LEPHAREDIR/config/zphot.para
+#  
+###################################################################  
+###     Additional stuff relative to filters :
+       ---------------------------------------
+# 
+# gives info about filters used
+	$LEPHAREDIR/source/filter_info -f filter_hdfn.dat
+#
+	exemple: $LEPHAREDIR/source/filter_info -f filter_hdfn.dat 
+#
+# plot the transmission curves with a kshell including Supermongo macro
+	$LEPHAREDIR/tools/filterplot full_pathname_for_FILTER_FILE
+#
+	exemple: $LEPHAREDIR/tools/filterplot $LEPHAREWORK/filt/filter_hdfn.dat
+#
+# atmospheric and galactic extinction through the filters
+	 $LEPHAREDIR/source/filter_extinc -f filter_hdfn.dat -e extinc_etc.dat -o exti_test.out 
+####################################################################
+#
+
+###################################################################
+###    THEORETICAL MAGNITUDES AND K-CORRECTION COMPUTATION      ###
+###################################################################
+#
+# mag for stars 
+	$LEPHAREDIR/source/mag_star -c $LEPHAREDIR/config/zphot.para 
+# mag for GALs
+	$LEPHAREDIR/source/mag_gal  -c $LEPHAREDIR/config/zphot.para -t G
+# mag for QSOs
+	$LEPHAREDIR/source/mag_gal  -c $LEPHAREDIR/config/zphot.para -t Q -EB_V 0.
+###################################################################  
+###     Additional stuff :
+#       -------------------
+#
+# z + mags + k-corr  extracted in ASCII file if 
+#         option :   LIB_ASCII  YES 
+#
+# mag for GALs with fixed Zformation (if Z_FORM specified)
+#	$LEPHAREDIR/source/mag_zform -c $LEPHAREDIR/config/zphot.para 
+# -> OFF for the moment  
+################################################################### 
+#
+###################################################################
+####                 ZPHOT COMPUTATION                          ###  
+###################################################################
+#
+# run the zphot code 
+	$LEPHAREDIR/source/zphota -c $LEPHAREDIR/config/zphot.para 
+#
+###     Additional stuff relative to output spectra :
+#       --------------------------------------------
+#
+# look at the best SED-fitting if (SPEC_OUT=YES) inside SM environment
+	prompt>  sm
+	sm> macro read "{$LEPHAREDIR}/tools/spec.sm" zsp Name [1-131] [0-1]
+	Name :  file Name of the object to plot. 
+	[1-131] : SED of the best Gal/GAL-FIR/GAL-STOCH/QSO/Star to plot
+			 1 : GAL         
+			 2 : GAL-FIR     
+			 4 : GAL-BCSTOCH 
+			 8 : QSO  
+			 16: STAR 
+			 32: GAL + GAL-FIR
+			 64: GAL-BCSTOCH + GAL-FIR
+        [1-131] Sum of  any combinations of the above numbers  
+
+	[0-1] : 0 plot on screen 
+		1 plot in ps file 
+
+###################################################################
+###################################################################

lephare_docker/lephare_dev/config/zphot.para

+##############################################################################
+#                CREATION OF LIBRARIES FROM SEDs List                        #
+# $LEPHAREDIR/source/sedtolib -t (S/Q/G) -c $LEPHAREDIR/config/zphot.para    #
+# help : $LEPHAREDIR/source/sedtolib -h (or -help)                           #
+##############################################################################
+#
+#------      STELLAR LIBRARY (ASCII SEDs)
+STAR_SED	$LEPHAREDIR/sed/STAR/STAR_MOD.list	# STAR list (full path)
+STAR_FSCALE	3.432E-09				# Arbitrary Flux Scale 
+STAR_LIB	LIB_STAR				# Bin. STAR LIBRARY ->
+							# $LEPHAREWORK/lib_bin
+#
+#------      QSO LIBRARY (ASCII SEDs) 
+QSO_SED		$LEPHAREDIR/sed/QSO/QSO_MOD.list        # QSO list (full path)
+QSO_FSCALE	1					# Arbitrary Flux Scale 
+QSO_LIB		LIB_QSO					# Bin. QSO LIBRARY ->
+							# $LEPHAREWORK/lib_bin
+#
+#------      GALAXY LIBRARY (ASCII or BINARY SEDs) 
+GAL_SED	   $LEPHAREDIR/sed/GAL/CWW_KINNEY/CWW_MOD.list  # GAL list (full path)
+GAL_FSCALE	1.					# Arbitrary Flux Scale
+GAL_LIB		LIB_CWW  				# Bin. GAL LIBRARY ->
+							# $LEPHAREWORK/lib_bin
+#SEL_AGE   $LEPHAREDIR/sed/GAL/HYPERZ/AGE_GISSEL_ALL.dat # Age list(full path)
+							# (def=NONE)	
+AGE_RANGE  0.,13.e9                                     # Age Min-Max in yr
+#
+#############################################################################
+#                           FILTERS                                         #
+#  $LEPHAREDIR/source/filter  -c $LEPHAREDIR/config/zphot.para              #
+#  help: $LEPHAREDIR/source/filter  -h (or -help)                           #
+#############################################################################
+#  Filter number and context 
+#   f300 f450 f606 f814 J  H  K 
+#   1    2    3    4    5  6  7
+#   1    2    4    8   16  32 64 = 127 
+#
+FILTER_LIST tmp/f300.pb,tmp/f450.pb,tmp/f606.pb,tmp/f814.pb,tmp/Jbb.pb,tmp/H.pb,tmp/K.pb
+					# (in $LEPHAREDIR/filt/*)
+TRANS_TYPE	0			# TRANSMISSION TYPE
+                                        # 0[-def]: Energy, 1: Nb of photons
+FILTER_CALIB    0                       # 0[-def]:  fnu=ctt 
+                                        # 1      :  nu.fnu=ctt 
+                                        # 2      :  fnu=nu 
+                                        # 3      :  fnu=Black Body @ T=10000K
+                                        # 4      :  for MIPS (leff with nu fnu=ctt and flux with BB @ 10000K  
+FILTER_FILE	HDF.filt		# output name of filter's file  ->
+                                        # $LEPHAREWORK/filt/
+#
+############################################################################
+#                 THEORETICAL  MAGNITUDES                                  #
+# $LEPHAREDIR/source/mag_star -c  $LEPHAREDIR/config/zphot.para (star only)#
+# help: $LEPHAREDIR/source/mag_star -h (or -help)                          #
+# $LEPHAREDIR/source/mag_gal  -t (Q or G) -c $LEPHAREDIR/config/zphot.para #
+#                                                         (for gal. & QSO) #
+# help: $LEPHAREDIR/source/mag_gal  -h (or -help)                          #
+############################################################################
+#
+#-------     From STELLAR LIBRARY   
+STAR_LIB_IN	LIB_STAR      # Input  STELLAR LIBRARY in $LEPHAREWORK/lib_bin/
+STAR_LIB_OUT	STAR_HDF      # Output STELLAR MAGN    -> $LEPHAREWORK/lib_mag/
+#
+#-------     From QSO     LIBRARY   
+QSO_LIB_IN	LIB_QSO	      # Input  QSO LIBRARY  in $LEPHAREWORK/lib_bin/
+QSO_LIB_OUT	QSO_HDF      # Output QSO MAGN     -> $LEPHAREWORK/lib_mag/
+#
+#-------     From GALAXY  LIBRARY  
+GAL_LIB_IN	LIB_CWW	      # Input  GAL LIBRARY  in $LEPHAREWORK/lib_bin/
+GAL_LIB_OUT	CWW_HDF      # Output GAL LIBRARY  -> $LEPHAREWORK/lib_mag/ 
+#
+#-------   MAG + Z_STEP + EXTINCTION + COSMOLOGY 
+MAGTYPE         AB		     # Magnitude type (AB or VEGA)
+Z_STEP 		0.04,6.,0.1 	     # dz, zmax, dzsup(if zmax>6) 
+COSMOLOGY	70,0.3,0.7	     # H0,om0,lbd0    (if lb0>0->om0+lbd0=1)
+MOD_EXTINC 	0,0		     # model range for extinction 
+EXTINC_LAW	calzetti.dat	     # ext. law (in  $LEPHAREDIR/ext/*)
+EB_V            0.,0.05,0.1,0.2,0.3  # E(B-V) (<50 values)
+EM_LINES        NO  
+# Z_FORM 	8,7,6,5,4,3 	     # Zformation for each SED in GAL_LIB_IN
+#
+#-------   ASCII OUTPUT FILES OPTION
+LIB_ASCII       NO		     # Writes output in ASCII
+                                     # in working directory
+#
+############################################################################
+#              PHOTOMETRIC REDSHIFTS                                       #
+# $LEPHAREDIR/source/zphot -c $LEPHAREDIR/config/zphot.para                #
+# help: $LEPHAREDIR/source/zphot -h (or -help)                             #
+############################################################################ 
+#  
+#
+#
+#-------    Input Catalog Informations   
+CAT_IN       $LEPHAREDIR/test/hdfn_lanzetta.in  # Input catalog  (full path) 
+INP_TYPE     F		          # Input type      (F:Flux or M:MAG)
+CAT_MAG      AB                   # Input Magnitude (AB or VEGA)
+CAT_FMT      MEME  		  # MEME: (Mag,Err)i  
+  		                  # MMEE: (Mag)i,(Err)i  
+CAT_LINES    1,100000             #  MIN and MAX RANGE of ROWS used in input cat [def:-99,-99]
+CAT_TYPE     LONG	          # Input Format    (LONG,SHORT-def)
+CAT_OUT	     $LEPHAREDIR/test/zphot.out	# Output catalog (full path) 
+PARA_OUT     $LEPHAREDIR/config/zphot_output.para  # Ouput parameter (full path)
+#
+BD_SCALE     0		          # Bands used for scaling 
+			          # (Sum 2^n; n=0->nbd-1, 0[-def]:all bands)
+GLB_CONTEXT  -1		          # Overwrite Context (Sum 2^n; n=0->nbd-1,
+                                  # 0       : all bands used,
+                                  # -1[-def]: used context per object 
+# FORB_CONTEXT -1                   # context for forbitten bands 
+# ERR_SCALE  0.03,0.02,0.02,0.02,0.04,0.04,0.04  # errors per band added in quadrature
+ERR_FACTOR  1.5                    # error scaling factor 1.0 [-def] 
+#
+#-------    Theoretical libraries  
+ZPHOTLIB    CWW_HDF,STAR_HDF,QSO_HDF    # Library used for Chi2 (max:3)
+ADD_EMLINES  NO 
+#
+########    PHOTOMETRIC REDSHIFTS OPTIONS      ###########
+# FIR LIBRARY 
+FIR_LIB         NONE
+FIR_LMIN         7.0           # Lambda Min (micron) for FIR analysis 
+FIR_CONT        -1
+FIR_SCALE       -1
+FIR_FREESCALE    YES             # ALLOW FOR FREE SCALING 
+FIR_SUBSTELLAR   NO
+# PHYSICAL LIBRARY with Stochastic models from  BC07    
+PHYS_LIB      NONE  
+PHYS_CONT    -1
+PHYS_SCALE   -1
+PHYS_NMAX     100000  
+#
+#-------     Priors  
+# MASS_SCALE	6.,16.		 # Lg(Scaling) min,max [0,0-def]
+MAG_ABS 	-10.,-26.	 # Mabs_min , Mabs_max [0,0-def]
+MAG_REF 	4		 # Reference number for band used by Mag_abs
+# ZFORM_MIN	5,5,5,5,5,5,3,1	 # Min. Zformation per SED -> Age constraint
+Z_RANGE        0.,99.99          # Z min-max used for the Galaxy library 
+EBV_RANGE      0,9               # E(B-V) MIN-MAX RANGE of E(B-V) used  
+# NZ_PRIOR      4,2,4                # I Band for prior on N(z)
+#                          
+#-------     Fixed Z   (need format LONG for input Cat)
+ZFIX		NO		 # fixed z and search best model [YES,NO-def]
+#
+#-------     Parabolic interpolation for Zbest  
+Z_INTERP	YES		 # redshift interpolation [YES,NO-def]
+#
+#-------  Analysis of normalized ML(exp-(0.5*Chi^2)) curve 
+#-------  Secondary peak analysis 
+DZ_WIN          0.5              # Window search for 2nd peaks [0->5;0.25-def]
+MIN_THRES       0.1              # Lower threshold for 2nd peaks[0->1; 0.1-def]
+#
+#-------  Probability (in %) per redshift intervals
+# PROB_INTZ     0,0.5,0.5,1.,1.,1.5     # even number 
+#
+#########    ABSOLUTE MAGNITUDES COMPUTATION   ###########
+#
+MABS_METHOD	1		 # 0[-def] : obs->Ref
+                                 # 1 : best  obs->Ref
+                                 # 2 : fixed obs->Ref
+                                 # 3 : mag from best SED
+                                 # 4 : Zbin
+MABS_CONTEXT    -1               # CONTEXT for Band used for MABS 
+
+MABS_REF	4		 # 0[-def]: filter obs chosen for Mabs :
+				 # ONLY USED IF MABS_METHOD=2
+MABS_FILT       1,2,3,4   	 # Chosen filters per redshift bin (MABS_ZBIN)
+				 # ONLY USED IF MABS_METHOD=4 
+MABS_ZBIN       0,0.5,1,1.5,2,3,3.5,4 # Redshift bins (even number) 
+				 # ONLY USED IF MABS_METHOD=4
+#########   OUTPUT SPECTRA                     ###########
+#
+SPEC_OUT	NO	 	 # spectrum for each object?  [YES,NO-def]
+CHI2_OUT        NO               # output file with all values : z,mod,chi2,E(B-V),... 
+                                 # BE CAREFUL can take a lot of space !!              
+#########  OUTPUT PDZ ANALYSIS  
+PDZ_OUT         NONE             # pdz output file name [def-NONE]
+                                 # add automatically PDZ_OUT[.pdz/.mabsx/.mod/.zph] 
+PDZ_MABS_FILT   2,10,14           # MABS for REF FILTERS to be extracted  
+# 
+#########   FAST MODE : color-space reduction        #####
+#
+FAST_MODE	NO 		 # Fast computation                [NO-def] 
+COL_NUM		3 		 # Number of colors used           [3-def]
+COL_SIGMA	3		 # Enlarge of the obs. color-errors[3-def]
+COL_SEL		AND		 # Combination between used colors [AND/OR-def]
+#
+#########   MAGNITUDE SHIFTS applied to libraries   ######
+#
+# APPLY_SYSSHIFT  0.             # Apply systematic shifts in each band
+                                 # used only if number of shifts matches
+                                 # with number of filters in the library    
+#
+#########   ADAPTIVE METHOD using Z spectro sample     ###
+#
+AUTO_ADAPT	NO		 # Adapting method with spectro [NO-def]
+ADAPT_BAND 	4,2,4		 # Reference band, band1, band2 for color 
+ADAPT_LIM       18,22.0		 # Mag limits for spectro in Ref band [18,21.5-def]
+ADAPT_POLY	1		 # Number of coef in  polynom (max=4) [1-def]
+ADAPT_METH      1		 # Fit as a function of
+				 # 1 : Color Model  [1-def]
+                                 # 2 : Redshift
+	 	                 # 3 : Models
+ADAPT_CONTEXT  -1                # Context for bands used for training
+                                 # -1[-def] used context per object
+ADAPT_ZBIN     0.01,6            # Redshift's interval used for training
+                                 # [0.001,6-Def]
+ADAPT_MODBIN   1,1000            # Model's interval    used for training
+                                 # [1,1000-Def]
+ERROR_ADAPT     NO               # [YES,NO-def]
+                                 # Add error in quadrature according to
+                                 # the difference between observed
+                                 # and predicted apparent magnitudes 
+#

lephare_docker/lephare_dev/config/zphot_output.para

+IDENT
+Z_BEST
+Z_BEST68_LOW
+Z_BEST68_HIGH
+Z_ML
+#Z_ML68_LOW
+#Z_ML68_HIGH
+#Z_BEST90_LOW
+#Z_BEST90_HIGH
+#Z_BEST99_LOW
+#Z_BEST99_HIGH
+CHI_BEST
+MOD_BEST
+EXTLAW_BEST
+EBV_BEST
+#ZF_BEST
+#MAG_ABS_BEST
+PDZ_BEST
+SCALE_BEST
+DIST_MOD_BEST
+NBAND_USED
+#NBAND_ULIM
+#
+####### Z-2nd GALAXY  ###########
+Z_SEC
+CHI_SEC
+MOD_SEC
+#AGE_SEC
+#EBV_SEC
+#ZF_SEC
+#MAG_ABS_SEC
+#PDZ_SEC
+#SCALE_SEC
+#
+######## Z-Best QSO #############
+Z_QSO
+CHI_QSO
+MOD_QSO
+#MAG_ABS_QSO
+#DIST_MOD_QSO
+######## Best STAR  #############
+MOD_STAR
+CHI_STAR
+#
+######## OBSERVED MAGNITUDES ####
+#MAG_OBS()
+#ERR_MAG_OBS()
+########  MODEL MAGNITUDES FOR GALAXY  ####
+#MAG_MOD()
+#
+######## K-COR , ABSOLUTE MAG, FILTER CHOICE  FOR GALAXY ##########
+#K_COR()
+#MAG_ABS()
+#MABS_FILT()
+#
+######## K-COR , ABSOLUTE MAG. FOR QSO ##########
+#K_COR_QSO()
+#MAG_ABS_QSO()
+#
+####### PROBABILITY PER Z BINS ##
+#PDZ()
+#
+####### INPUT INFO ##############
+CONTEXT
+ZSPEC
+#STRING_INPUT
+#######  Far-IR  PARAMETERS  derived from  FIR_LIB  library  ###########
+#LUM_TIR_BEST
+#LIB_FIR
+#MOD_FIR 
+#CHI2_FIR
+#FSCALE_FIR
+#NBAND_FIR
+#LUM_TIR_MED
+#LUM_TIR_INF
+#LUM_TIR_SUP
+#MAG_MOD_FIR()
+#MAG_ABS_FIR()
+#K_COR_FIR()
+#########  PHYSICAL PARAMETERS derived from  ZPHOTLIB  library IF DEFINED   ######
+#AGE_BEST 
+#AGE_INF
+#AGE_MED
+#AGE_SUP
+##
+#LDUST_BEST
+#LDUST_INF
+#LDUST_MED
+#LDUST_SUP
+##
+#MASS_BEST
+#MASS_INF
+#MASS_MED
+#MASS_SUP
+#
+#SFR_BEST
+#SFR_INF
+#SFR_MED
+#SFR_SUP
+#
+#SSFR_BEST
+#SSFR_INF
+#SSFR_MED
+#SSFR_SUP
+#
+#LUM_NUV_BEST
+#LUM_R_BEST
+#LUM_K_BEST
+#########  PHYSICAL PARAMETERS  derived from PHYS_LIB library  
+#  best Chi^2  or median+/-68% of the ML distribution  
+#  1: Lg(Age[yr])           [1]
+#  2: Lg(Lnuv[Lo])          [23]    3: Lg(Lr[Lo])            [24]
+#  4: Lg(Lk[Lo])            [25]       
+#  5: Lg(Ldust[Lo])         [5]     6: Lg(Mass[Mo])          [6]         
+#  7: Lg(SFR_1e8[Mo/yr])    [8]     8: Lg(SFR_1e9[Mo/yr])    [9]
+#  9: Gamma[Gyr]            [10]   10: Metallicity           [11]   
+# 11: Tauv                  [12]   12: mu                    [13] 
+# 13: Lg(Age_weightmass[yr])[14]   14: Lg(Age_weightLr[yr])  [15]
+# 15: Lg(Age_Tlastburst[yr])[16]
+# 16: Frac_burst<1.e8[yr]   [17]   17: Frac_burst<1e9[yr]    [18]
+# 18: Nb burst              [21]
+# 19: Lg(SSFR_1e8 [yr-1])   [42]   20: Lg(SSFR_1e9 [yr-1])   [43]
+# 21: A(1500) [mag]         [26]   22: A(2300) [mag]         [27] 
+# 23: A(4500) [mag]         [29]   24: A(6000) [mag]         [30] 
+# 25: A(8500) [mag]         [31]   26: A(22000)[mag]         [32]            
+# 27: A(3500) [mag]         [28] 
+# 28: D4000                 [34]   29: Lg(Ldust_LC00)        [39]
+# 30: F_mu[Ld(ISM)/Ld_LC00] [40]   31: eta[Ld(>4000)/Ld)]    [41]
+# 32: Rec_Mass[(Mt-M*)/Mt]  [7] 
+#####################################################
+#PHYS_CHI2_BEST
+#PHYS_MOD_BEST
+#PHYS_MAG_MOD()
+#PHYS_MAG_ABS()
+#PHYS_K_COR()
+#PHYS_PARA1_BEST
+#PHYS_PARA2_BEST
+#PHYS_PARA3_BEST
+#PHYS_PARA4_BEST
+#PHYS_PARA5_BEST
+#PHYS_PARA6_BEST
+#PHYS_PARA7_BEST
+#PHYS_PARA8_BEST
+#PHYS_PARA9_BEST
+#PHYS_PARA10_BEST
+#PHYS_PARA11_BEST
+#PHYS_PARA12_BEST
+#PHYS_PARA13_BEST
+#PHYS_PARA14_BEST
+#PHYS_PARA15_BEST
+#PHYS_PARA16_BEST
+#PHYS_PARA17_BEST
+#PHYS_PARA18_BEST
+#PHYS_PARA19_BEST
+#PHYS_PARA20_BEST
+#PHYS_PARA21_BEST
+#PHYS_PARA22_BEST
+#PHYS_PARA23_BEST
+#PHYS_PARA24_BEST
+#PHYS_PARA25_BEST
+#PHYS_PARA26_BEST
+#PHYS_PARA27_BEST
+#  based on ML analysis with MEDIAN,68p_INF,68p_SUP values 
+#PHYS_PARA1_MED
+#PHYS_PARA2_MED
+#PHYS_PARA3_MED
+#PHYS_PARA4_MED
+#PHYS_PARA5_MED
+#PHYS_PARA6_MED
+#PHYS_PARA7_MED
+#PHYS_PARA8_MED
+#PHYS_PARA9_MED
+#PHYS_PARA10_MED
+#PHYS_PARA11_MED
+#PHYS_PARA12_MED
+#PHYS_PARA13_MED
+#PHYS_PARA14_MED
+#PHYS_PARA15_MED
+#PHYS_PARA16_MED
+#PHYS_PARA17_MED
+#PHYS_PARA18_MED
+#PHYS_PARA19_MED
+#PHYS_PARA20_MED
+#PHYS_PARA21_MED
+#PHYS_PARA22_MED
+#PHYS_PARA23_MED
+#PHYS_PARA24_MED
+#PHYS_PARA25_MED
+#PHYS_PARA26_MED
+#PHYS_PARA27_MED
+#PHYS_PARA1_INF
+#PHYS_PARA2_INF
+#PHYS_PARA3_INF
+#PHYS_PARA4_INF
+#PHYS_PARA5_INF
+#PHYS_PARA6_INF
+#PHYS_PARA7_INF
+#PHYS_PARA8_INF
+#PHYS_PARA9_INF
+#PHYS_PARA10_INF
+#PHYS_PARA11_INF
+#PHYS_PARA12_INF
+#PHYS_PARA13_INF
+#PHYS_PARA14_INF
+#PHYS_PARA15_INF
+#PHYS_PARA16_INF
+#PHYS_PARA17_INF
+#PHYS_PARA18_INF
+#PHYS_PARA19_INF
+#PHYS_PARA20_INF
+#PHYS_PARA21_INF
+#PHYS_PARA22_INF
+#PHYS_PARA23_INF
+#PHYS_PARA24_INF
+#PHYS_PARA25_INF
+#PHYS_PARA26_INF
+#PHYS_PARA27_INF
+#PHYS_PARA1_SUP
+#PHYS_PARA2_SUP
+#PHYS_PARA3_SUP
+#PHYS_PARA4_SUP
+#PHYS_PARA5_SUP
+#PHYS_PARA6_SUP
+#PHYS_PARA7_SUP
+#PHYS_PARA8_SUP
+#PHYS_PARA9_SUP
+#PHYS_PARA10_SUP
+#PHYS_PARA11_SUP
+#PHYS_PARA12_SUP
+#PHYS_PARA13_SUP
+#PHYS_PARA14_SUP
+#PHYS_PARA15_SUP
+#PHYS_PARA16_SUP
+#PHYS_PARA17_SUP
+#PHYS_PARA18_SUP
+#PHYS_PARA19_SUP
+#PHYS_PARA20_SUP
+#PHYS_PARA21_SUP
+#PHYS_PARA22_SUP
+#PHYS_PARA23_SUP
+#PHYS_PARA24_SUP
+#PHYS_PARA25_SUP
+#PHYS_PARA26_SUP
+#PHYS_PARA27_SUP
+
+

lephare_docker/lephare_dev/config/zphot_output_old.para

+IDENT
+Z_BEST
+Z_BEST68_LOW
+Z_BEST68_HIGH
+Z_ML
+#Z_ML68_LOW
+#Z_ML68_HIGH
+#Z_BEST90_LOW
+#Z_BEST90_HIGH
+#Z_BEST99_LOW
+#Z_BEST99_HIGH
+CHI_BEST
+MOD_BEST
+EXTLAW_BEST
+EBV_BEST
+#ZF_BEST
+#MAG_ABS_BEST
+PDZ_BEST
+SCALE_BEST
+DIST_MOD_BEST
+NBAND_USED
+#NBAND_ULIM
+#
+####### Z-2nd GALAXY  ###########
+Z_SEC
+CHI_SEC
+MOD_SEC
+#AGE_SEC
+#EBV_SEC
+#ZF_SEC
+#MAG_ABS_SEC
+#PDZ_SEC
+#SCALE_SEC
+#
+######## Z-Best QSO #############
+Z_QSO
+CHI_QSO
+MOD_QSO
+#MAG_ABS_QSO
+#DIST_MOD_QSO
+######## Best STAR  #############
+MOD_STAR
+CHI_STAR
+#
+######## OBSERVED MAGNITUDES ####
+#MAG_OBS()
+#ERR_MAG_OBS()
+########  MODEL MAGNITUDES FOR GALAXY  ####
+#MAG_MOD()
+#
+######## K-COR , ABSOLUTE MAG, FILTER CHOICE  FOR GALAXY ##########
+#K_COR()
+#MAG_ABS()
+#MABS_FILT()
+#
+######## K-COR , ABSOLUTE MAG. FOR QSO ##########
+#K_COR_QSO()
+#MAG_ABS_QSO()
+#
+####### PROBABILITY PER Z BINS ##
+#PDZ()
+#
+####### INPUT INFO ##############
+CONTEXT
+ZSPEC
+#STRING_INPUT
+#######  Far-IR  PARAMETERS  derived from  FIR_LIB  library  ###########
+#LUM_TIR_BEST
+#LIB_FIR
+#MOD_FIR 
+#CHI2_FIR
+#FSCALE_FIR
+#NBAND_FIR
+#LUM_TIR_MED
+#LUM_TIR_INF
+#LUM_TIR_SUP
+#MAG_MOD_FIR()
+#MAG_ABS_FIR()
+#K_COR_FIR()
+#########  PHYSICAL PARAMETERS derived from  ZPHOTLIB  library IF DEFINED   ######
+#AGE_BEST 
+#AGE_INF
+#AGE_MED
+#AGE_SUP
+##
+#LDUST_BEST
+#LDUST_INF
+#LDUST_MED
+#LDUST_SUP
+##
+#MASS_BEST
+#MASS_INF
+#MASS_MED
+#MASS_SUP
+#
+#SFR_BEST
+#SFR_INF
+#SFR_MED
+#SFR_SUP
+#
+#SSFR_BEST
+#SSFR_INF
+#SSFR_MED
+#SSFR_SUP
+#
+#LUM_NUV_BEST
+#LUM_R_BEST
+#LUM_K_BEST
+#########  PHYSICAL PARAMETERS  derived from PHYS_LIB library  
+#  best Chi^2  or median+/-68% of the ML distribution  
+#  1: Lg(Age[yr])
+#  2: Lg(Luv[Lo])                3: Lg(Lr[Lo])               4: Lg(Lk[Lo])
+#  5: Lg(Ldust [Lo]) 
+#  6: Lg(Mass[Mo])               7: Lg(SFR_1e8[Mo/yr])       8: Lg(SFR_1e9[Mo/yr])
+#  9: Lg(Gamma[Gyr])            10: Metallicity   
+# 11: Tauv                      12: mu 
+# 13: Lg(Age_weightRlight[yr])  14: Lg(Age_weightMass[yr])
+# 15: Lg(Age_tlastburst[yr])
+# 16: Log(Frac_burst_1.e8[yr])  17: Lg(Frac_burst_1e9[yr])  18: Nb burst 
+# 19: Lg(SSFR_1e8 [yr-1])       20: Lg(SSFR_1e9 [yr-1])
+# 21: A(1500) [mag]             22: A(2300) [mag]           23: A(4500) [mag]
+# 24: A(6000) [mag]             25: A(8500) [mag]           26: A(22000)[mag] 
+# 27: Lg(Ldust_hot[Lo]) 
+#PHYS_CHI2_BEST
+#PHYS_MOD_BEST
+#PHYS_MAG_MOD()
+#PHYS_MAG_ABS()
+#PHYS_K_COR()
+#PHYS_PARA1_BEST
+#PHYS_PARA2_BEST
+#PHYS_PARA3_BEST
+#PHYS_PARA4_BEST
+#PHYS_PARA5_BEST
+#PHYS_PARA6_BEST
+#PHYS_PARA7_BEST
+#PHYS_PARA8_BEST
+#PHYS_PARA9_BEST
+#PHYS_PARA10_BEST
+#PHYS_PARA11_BEST
+#PHYS_PARA12_BEST
+#PHYS_PARA13_BEST
+#PHYS_PARA14_BEST
+#PHYS_PARA15_BEST
+#PHYS_PARA16_BEST
+#PHYS_PARA17_BEST
+#PHYS_PARA18_BEST
+#PHYS_PARA19_BEST
+#PHYS_PARA20_BEST
+#PHYS_PARA21_BEST
+#PHYS_PARA22_BEST
+#PHYS_PARA23_BEST
+#PHYS_PARA24_BEST
+#PHYS_PARA25_BEST
+#PHYS_PARA26_BEST
+#PHYS_PARA27_BEST
+#  based on ML analysis with MEDIAN,68p_INF,68p_SUP values 
+#PHYS_PARA1_MED
+#PHYS_PARA2_MED
+#PHYS_PARA3_MED
+#PHYS_PARA4_MED
+#PHYS_PARA5_MED
+#PHYS_PARA6_MED
+#PHYS_PARA7_MED
+#PHYS_PARA8_MED
+#PHYS_PARA9_MED
+#PHYS_PARA10_MED
+#PHYS_PARA11_MED
+#PHYS_PARA12_MED
+#PHYS_PARA13_MED
+#PHYS_PARA14_MED
+#PHYS_PARA15_MED
+#PHYS_PARA16_MED
+#PHYS_PARA17_MED
+#PHYS_PARA18_MED
+#PHYS_PARA19_MED
+#PHYS_PARA20_MED
+#PHYS_PARA21_MED
+#PHYS_PARA22_MED
+#PHYS_PARA23_MED
+#PHYS_PARA24_MED
+#PHYS_PARA25_MED
+#PHYS_PARA26_MED
+#PHYS_PARA27_MED
+#PHYS_PARA1_INF
+#PHYS_PARA2_INF
+#PHYS_PARA3_INF
+#PHYS_PARA4_INF
+#PHYS_PARA5_INF
+#PHYS_PARA6_INF
+#PHYS_PARA7_INF
+#PHYS_PARA8_INF
+#PHYS_PARA9_INF
+#PHYS_PARA10_INF
+#PHYS_PARA11_INF
+#PHYS_PARA12_INF
+#PHYS_PARA13_INF
+#PHYS_PARA14_INF
+#PHYS_PARA15_INF
+#PHYS_PARA16_INF
+#PHYS_PARA17_INF
+#PHYS_PARA18_INF
+#PHYS_PARA19_INF
+#PHYS_PARA20_INF
+#PHYS_PARA21_INF
+#PHYS_PARA22_INF
+#PHYS_PARA23_INF
+#PHYS_PARA24_INF
+#PHYS_PARA25_INF
+#PHYS_PARA26_INF
+#PHYS_PARA27_INF
+#PHYS_PARA1_SUP
+#PHYS_PARA2_SUP
+#PHYS_PARA3_SUP
+#PHYS_PARA4_SUP
+#PHYS_PARA5_SUP
+#PHYS_PARA6_SUP
+#PHYS_PARA7_SUP
+#PHYS_PARA8_SUP
+#PHYS_PARA9_SUP
+#PHYS_PARA10_SUP
+#PHYS_PARA11_SUP
+#PHYS_PARA12_SUP
+#PHYS_PARA13_SUP
+#PHYS_PARA14_SUP
+#PHYS_PARA15_SUP
+#PHYS_PARA16_SUP
+#PHYS_PARA17_SUP
+#PHYS_PARA18_SUP
+#PHYS_PARA19_SUP
+#PHYS_PARA20_SUP
+#PHYS_PARA21_SUP
+#PHYS_PARA22_SUP
+#PHYS_PARA23_SUP
+#PHYS_PARA24_SUP
+#PHYS_PARA25_SUP
+#PHYS_PARA26_SUP
+#PHYS_PARA27_SUP
+
+