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Commit 12488ec1 authored by xin's avatar xin
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fix bug:spec line shift 3-5 A; add C,D,E order spec and extract spec

parent 7231bb80
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SpecDisperser/SpecDisperser.py
View file @ 12488ec1
'''
Author: zx
Date: 2021-04-08 13:49:35
LastEditTime: 2022-06-28 19:20:23
LastEditTime: 2023-02-24 00:53:19
LastEditors: xin zhangxinbjfu@gmail.com
Description: In User Settings Edit
FilePath: /undefined/Users/zhangxin/Work/SlitlessSim/sls_lit_demo/SpecDisperser/SpecDisperser.py
......@@ -150,6 +150,8 @@ class SpecDisperser(object):
lam_intep * 1e-10)), integrate=0, left=0,
right=0)
# self.writerSensitivityFile(conffile = self.grating_conf_file, beam = beam, w = lam_beam[lam_index], sens = ysensitivity[lam_index])
ysens[lam_index] = interp.interp_conserve_c(lam_beam[lam_index], lam_intep, bean_thr_spec, integrate=1, left=0,
right=0)
......@@ -201,13 +203,19 @@ class SpecDisperser(object):
originOut_x = origin_in[1] + dx0_in - 1
originOut_y = origin_in[0] + dy0_in - 1
return model, originOut_x, originOut_y, dxpix, dypix, lam_beam[lam_index],ysens[lam_index]
def writerSensitivityFile(self, conffile = '', beam = '', w = None, sens = None):
orders={'A':'1st','B':'0st','C':'2st'}
sens_file_name = conffile[0:-5]+'_sensitivity_'+ orders[beam] + '.fits'
return model, originOut_x, originOut_y, dxpix, dypix, lam_beam,ysens
# def writerSensitivityFile(self, conffile = '', beam = '', w = None, sens = None):
# orders={'A':'1st','B':'0st','C':'2st'}
# sens_file_name = conffile[0:-5]+'_sensitivity_'+ orders[beam] + '.fits'
# if not os.path.exists(sens_file_name) == True:
# senstivity_out = Table(array([w,sens]).T, names=('WAVELENGTH', 'SENSITIVITY'))
# senstivity_out.write(sens_file_name, format='fits')
def writerSensitivityFile(self, conffile='', beam='', w=None, sens=None):
orders = {'A': '1st', 'B': '0st', 'C': '2st', 'D': '-1st', 'E': '-2st'}
sens_file_name = conffile[0:-5] + '_sensitivity_' + orders[beam] + '.fits'
if not os.path.exists(sens_file_name) == True:
senstivity_out = Table(array([w,sens]).T, names=('WAVELENGTH', 'SENSITIVITY'))
senstivity_out = Table(array([w, sens]).T, names=('WAVELENGTH', 'SENSITIVITY'))
senstivity_out.write(sens_file_name, format='fits')
......
SpecGen/Config.py
View file @ 12488ec1
'''
Author: zx
Date: 2021-04-08 13:49:35
LastEditTime: 2022-05-17 09:36:01
LastEditTime: 2023-02-23 23:28:07
LastEditors: xin zhangxinbjfu@gmail.com
Description: In User Settings Edit
FilePath: /undefined/Users/zhangxin/Work/SlitlessSim/sls_lit_demo/simDemo.py
......@@ -13,6 +13,8 @@ class Config(object):
def __init__(self, dataDir = '/data/'):
self.conFiles = {'GU': dataDir + 'conf/CSST_GU2.conf', 'GV': dataDir + 'conf/CSST_GV2.conf', 'GI': dataDir + 'conf/CSST_GI2.conf'}
self.thrFisle = {'GU': dataDir + 'conf/GU.Throughput', 'GV': dataDir + 'conf/GV.Throughput', 'GI': dataDir + 'conf/GI.Throughput'}
self.senFisle = {'GU': dataDir + 'conf/CSST_GU.sensitivity', 'GV': dataDir + 'conf/CSST_GV.sensitivity', 'GI': dataDir + 'conf/CSST_GI.sensitivity'}
self.senFisle = {'GU': dataDir + 'conf/CSST_GU.sensitivity.', 'GV': dataDir + 'conf/CSST_GV.sensitivity.', 'GI': dataDir + 'conf/CSST_GI.sensitivity.'}
self.orderIDs = {'A': '1st', 'B': '0st', 'C': '2st', 'D': '-1st', 'E': '-2st'}
self.bandRanges = {'GU':[2550, 4000], 'GV': [4000,6200], 'GI': [6200, 10000]}
# self.senFisle = {'GU': dataDir + 'conf/CSST_GU_sensitivity_', 'GV': dataDir + 'conf/CSST_GV_sensitivity_', 'GI': dataDir + 'conf/CSST_GI_sensitivity_'}
# self.orderIDs = {'A': '1st', 'B': '0st', 'D': '2st', 'C': '-1st', 'E': '-2st'}
\ No newline at end of file
SpecGen/SpecGenerator.py
View file @ 12488ec1
......@@ -2,7 +2,7 @@
'''
Author: zx
Date: 2021-04-08 13:49:35
LastEditTime: 2022-07-05 14:58:42
LastEditTime: 2023-02-24 00:57:20
LastEditors: xin zhangxinbjfu@gmail.com
Description: In User Settings Edit
FilePath: /undefined/Users/zhangxin/Work/SlitlessSim/sls_lit_demo/simDemo.py
......@@ -80,9 +80,15 @@ class SpecGenerator(object):
specConfile = self.config.conFiles[self.grating]
throughput_f = self.config.senFisle[self.grating] + '.' + self.config.orderIDs[self.beam] + '.fits'
throughput_f = self.config.senFisle[self.grating] + self.config.orderIDs[self.beam] + '.fits'
sed = self.generateSEDfromFiles(self.sedFile,2000,10000,0.5)
sed = self.generateSEDfromFiles(self.sedFile,2500,10000,0.01)
x_nominal = int(np.floor(self.xcenter + 0.5))
y_nominal = int(np.floor(self.ycenter + 0.5))
dx = self.xcenter - x_nominal+0.5
dy = self.ycenter - y_nominal+0.5
offset = galsim.PositionD(dx, dy)
# print(skybg)
# print(specConfile)
......@@ -99,13 +105,17 @@ class SpecGenerator(object):
conv_gal = galsim.Convolve([gal_ell,self.psf])
stamp = conv_gal.drawImage(wcs=galsim.PixelScale(self.p_size))*self.t*self.expNum*math.pi*(self.aper/2)*(self.aper/2)
stamp = conv_gal.drawImage(wcs=galsim.PixelScale(self.p_size), offset=offset)*self.t*self.expNum*math.pi*(self.aper/2)*(self.aper/2)
stamp.setOrigin(0,0)
origin_star = [y_nominal - (stamp.center.y - stamp.ymin),
x_nominal - (stamp.center.x - stamp.xmin)]
origin_star = [self.ycenter - (stamp.center.y - stamp.ymin),
self.xcenter - (stamp.center.x - stamp.xmin)]
origin_star = [y_nominal - (stamp.center.y - stamp.ymin),
x_nominal - (stamp.center.x - stamp.xmin)]
sdp = SpecDisperser.SpecDisperser(orig_img=stamp, xcenter=self.xcenter,
ycenter=self.ycenter, origin=origin_star,
sdp = SpecDisperser.SpecDisperser(orig_img=stamp, xcenter=x_nominal,
ycenter=y_nominal, origin=origin_star,
tar_spec=sed,
conf=specConfile,
isAlongY=0)
......@@ -151,6 +161,14 @@ class SpecGenerator(object):
fluxRatio = pFlux/tFlux
if fluxRatio>limitfluxratio:
break
f1 = spec_orders[self.beam][0][y_cent_pos-i:y_cent_pos+i+1].sum(0)
f2 = spec_orders[self.beam][0].sum(0)
ratio_vec = np.zeros_like(f1)
nozero_flag = f2 != 0
ratio_vec[nozero_flag] = f1[nozero_flag]/f2[nozero_flag]
# ratio_vec = spec_orders[self.beam][0][y_cent_pos-i:y_cent_pos+i+1].sum(0)/spec_orders[self.beam][0].sum(0)
y_range = i
# print(y_range, fluxRatio)
y_len_pix = 2 * y_range + 1
......@@ -162,19 +180,35 @@ class SpecGenerator(object):
wave_flux = np.zeros(wave_pix.shape[0])
err_flux = np.zeros(wave_pix.shape[0])
specRangeImg = []
for i in np.arange(1, wave_pix.shape[0] - 1):
w = wave_pix[i]
true_center = stamp.center + galsim.PositionD(self.xcenter-x_nominal, self.ycenter-y_nominal)
wavePos_x = true_center.x + wave_pos - wave_pos[0]
wavePos_x_interp = np.arange(int(wavePos_x[0]), int(wavePos_x[-1]))
lam_trace = np.interp(wavePos_x_interp,wavePos_x,wave_pix)
wave_flux = np.zeros(lam_trace.shape[0])
err_flux = np.zeros(lam_trace.shape[0])
for i in np.arange(1, lam_trace.shape[0] - 1):
w = lam_trace[i]
wave2pix_pos=wavePos_x_interp[i]
if (bRange[0] <= w <= bRange[1]):
thp_w = thp_i(w)
deltW = np.abs(w - wave_pix[i - 1]) / 2 + np.abs(wave_pix[i + 1] - w) / 2
f = spec_pix[wave_pos[0] - 1 + i]
f = f / self.t / thp_w / deltW /self.expNum
err = err2_pix[wave_pos[0] - 1 + i]
deltW = np.abs(w - lam_trace[i - 1]) / 2 + np.abs(lam_trace[i + 1] - w) / 2
f = spec_pix[wave2pix_pos]
f_ratio = ratio_vec[wave2pix_pos]
if f_ratio==0:
f_ratio=1
f = f / self.t / thp_w / deltW /self.expNum/f_ratio
err = err2_pix[wave2pix_pos]
# err = err/ t / deltW
err = np.sqrt(err)/ self.t / deltW/ thp_w /self.expNum
err = np.sqrt(err)/ self.t / deltW/ thp_w /self.expNum/f_ratio
specRangeImg.append(wave2pix_pos)
# err = err / thp_w
specRangeImg.append(wave_pos[0] - 1 + i)
else:
f = 0
err = 0
......@@ -191,14 +225,20 @@ class SpecGenerator(object):
saturePix[0] = Aimg_cal[ids].shape[0]
saturePix[1] = Aimg_cal.shape[0]*Aimg_cal.shape[1]
saturePix[2] = saturePix[0]/saturePix[1]
saturePix[3] = fluxRatio
saturePix[3] = 1
saturePix[4] = np.amax(Aimg_cal)
saturePix[5] = np.amin(Aimg_cal)
idx = (wave_pix >= bRange[0]-100)
idx1 = (wave_pix[idx] <= bRange[1]+100)
specTab = Table(np.array([wave_pix[idx][idx1], wave_flux[idx][idx1], err_flux[idx][idx1]]).T,names=('WAVELENGTH', 'FLUX','ERR'))
idx = (lam_trace >= bRange[0]-100)
idx1 = (lam_trace[idx] <= bRange[1]+100)
w_select = lam_trace[idx][idx1]
f_select = wave_flux[idx][idx1]
e_select = err_flux[idx][idx1]
lam_index = np.argsort(w_select)
specTab = Table(np.array([w_select[lam_index], f_select[lam_index], e_select[lam_index]]).T,names=('WAVELENGTH', 'FLUX','ERR'))
# spec_orig = np.loadtxt(sedFile)
......@@ -214,21 +254,43 @@ class SpecGenerator(object):
def generateSpec1dforStar(self,limitfluxratio = 0.8):
import matplotlib.pyplot as plt
specConfile = self.config.conFiles[self.grating]
throughput_f = self.config.senFisle[self.grating] + '.' + self.config.orderIDs[self.beam] + '.fits'
throughput_f = self.config.senFisle[self.grating] + self.config.orderIDs[self.beam] + '.fits'
sed = self.generateSEDfromFiles(self.sedFile,2000,10000,0.5)
sed = self.generateSEDfromFiles(self.sedFile,2500,10000,0.01)
x_nominal = int(np.floor(self.xcenter + 0.5))
y_nominal = int(np.floor(self.ycenter + 0.5))
dx = self.xcenter - x_nominal+0.5
dy = self.ycenter - y_nominal+0.5
offset = galsim.PositionD(dx, dy)
star = galsim.DeltaFunction()
# star = star.withFlux(tel.pupil_area * exptime)
star = galsim.Convolve(self.psf, star)
stamp = star.drawImage(wcs=galsim.PixelScale(self.p_size), offset=offset,nx=100, ny=100)*self.t*self.expNum*math.pi*(self.aper/2)*(self.aper/2)
stamp.setOrigin(0,0)
# print(stamp.center)
# kk = np.where(stamp.array == np.amax(stamp.array))
# print(kk[0][0], kk[1][0])
# plt.figure()
# plt.imshow(stamp.array)
# ttt = np.sum(stamp.array)
# stamp.array[:,:]=0
# stamp.array[stamp.center.y, stamp.center.x] = ttt
stamp = self.psf.drawImage(wcs=galsim.PixelScale(self.p_size))*self.t*self.expNum*math.pi*(self.aper/2)*(self.aper/2)
origin_star = [self.ycenter - (stamp.center.y - stamp.ymin),
self.xcenter - (stamp.center.x - stamp.xmin)]
# stamp = self.psf.drawImage(wcs=galsim.PixelScale(self.p_size))*self.t*self.expNum*math.pi*(self.aper/2)*(self.aper/2)
sdp = SpecDisperser.SpecDisperser(orig_img=stamp, xcenter=self.xcenter,
ycenter=self.ycenter, origin=origin_star,
origin_star = [y_nominal - (stamp.center.y - stamp.ymin),
x_nominal - (stamp.center.x - stamp.xmin)]
sdp = SpecDisperser.SpecDisperser(orig_img=stamp, xcenter=x_nominal,
ycenter=y_nominal, origin=origin_star,
tar_spec=sed,
conf=specConfile,
isAlongY=0)
......@@ -274,6 +336,13 @@ class SpecGenerator(object):
fluxRatio = pFlux/tFlux
if fluxRatio>limitfluxratio:
break
f1 = spec_orders[self.beam][0][y_cent_pos-i:y_cent_pos+i+1].sum(0)
f2 = spec_orders[self.beam][0].sum(0)
ratio_vec = np.zeros_like(f1)
nozero_flag = f2 != 0
ratio_vec[nozero_flag] = f1[nozero_flag]/f2[nozero_flag]
# ratio_vec = spec_orders[self.beam][0][y_cent_pos-i:y_cent_pos+i+1].sum(0)/spec_orders[self.beam][0].sum(0)
y_range = i
# print(y_range, fluxRatio)
y_len_pix = 2 * y_range + 1
......@@ -282,23 +351,35 @@ class SpecGenerator(object):
err2_pix[i] = sum(Aimg_orig[y_cent_pos-y_range:y_cent_pos+y_range+1, i]) + (self.skybg + self.dark)*self.t * y_len_pix * self.expNum + self.readout*self.readout * y_len_pix * self.expNum
bRange = self.config.bandRanges[self.grating]
wave_flux = np.zeros(wave_pix.shape[0])
err_flux = np.zeros(wave_pix.shape[0])
specRangeImg = []
for i in np.arange(1, wave_pix.shape[0] - 1):
w = wave_pix[i]
true_center = stamp.center + galsim.PositionD(self.xcenter-x_nominal, self.ycenter-y_nominal)
wavePos_x = true_center.x + wave_pos - wave_pos[0]
wavePos_x_interp = np.arange(int(wavePos_x[0]), int(wavePos_x[-1]))
lam_trace = np.interp(wavePos_x_interp,wavePos_x,wave_pix)
wave_flux = np.zeros(lam_trace.shape[0])
err_flux = np.zeros(lam_trace.shape[0])
for i in np.arange(1, lam_trace.shape[0] - 1):
w = lam_trace[i]
wave2pix_pos=wavePos_x_interp[i]
if (bRange[0] <= w <= bRange[1]):
thp_w = thp_i(w)
deltW = np.abs(w - wave_pix[i - 1]) / 2 + np.abs(wave_pix[i + 1] - w) / 2
f = spec_pix[wave_pos[0] - 1 + i]
f = f / self.t / thp_w / deltW /self.expNum
err = err2_pix[wave_pos[0] - 1 + i]
deltW = np.abs(w - lam_trace[i - 1]) / 2 + np.abs(lam_trace[i + 1] - w) / 2
f = spec_pix[wave2pix_pos]
f_ratio = ratio_vec[wave2pix_pos]
if f_ratio==0:
f_ratio=1
f = f / self.t / thp_w / deltW /self.expNum/f_ratio
err = err2_pix[wave2pix_pos]
# err = err/ t / deltW
err = np.sqrt(err)/ self.t / deltW/ thp_w /self.expNum
specRangeImg.append(wave_pos[0] - 1 + i)
err = np.sqrt(err)/ self.t / deltW/ thp_w /self.expNum/f_ratio
specRangeImg.append(wave2pix_pos)
# err = err / thp_w
else:
f = 0
......@@ -316,14 +397,19 @@ class SpecGenerator(object):
saturePix[0] = Aimg_cal[ids].shape[0]
saturePix[1] = Aimg_cal.shape[0]*Aimg_cal.shape[1]
saturePix[2] = saturePix[0]/saturePix[1]
saturePix[3] = fluxRatio
saturePix[3] = 1
saturePix[4] = np.amax(Aimg_cal)
saturePix[5] = np.amin(Aimg_cal)
idx = (wave_pix >= bRange[0]-100)
idx1 = (wave_pix[idx] <= bRange[1]+100)
idx = (lam_trace >= bRange[0]-100)
idx1 = (lam_trace[idx] <= bRange[1]+100)
w_select = lam_trace[idx][idx1]
f_select = wave_flux[idx][idx1]
e_select = err_flux[idx][idx1]
lam_index = np.argsort(w_select)
specTab = Table(np.array([wave_pix[idx][idx1], wave_flux[idx][idx1], err_flux[idx][idx1]]).T,names=('WAVELENGTH', 'FLUX','ERR'))
specTab = Table(np.array([w_select[lam_index], f_select[lam_index], e_select[lam_index]]).T,names=('WAVELENGTH', 'FLUX','ERR'))
# spec_orig = np.loadtxt(sedFile)
......
SpecWindow/specWin.py
View file @ 12488ec1
......@@ -422,12 +422,12 @@ class Example(QMainWindow):
g_pa = float(self.gpaText.text())
g_q = float(self.gqText.text())
specTab, specImg, img, sutPix=specG.generateSpec1dforGal(s_n = g_sn, re = g_re, pa = g_pa,q_ell = g_q,limitfluxratio=0.8)
self.outinfo.setText('saturation: 90000 e- , saturation pixel number: %d, total pixel number: %d, saturation ratio: %f, pixel value maximun: %d e-, pixel value minimum: %d e-'%(sutPix[0],sutPix[1],sutPix[2],sutPix[4],sutPix[5]))
# self.outinfo.adjustSize()
spec_orig = np.loadtxt(sedFn)
self.fig.add_line(specTab['WAVELENGTH'],specTab['FLUX']/sutPix[3], spec_orig[:,0], spec_orig[:,1],specImg, grating)
self.fig.add_line(specTab['WAVELENGTH'],specTab['FLUX'], spec_orig[:,0], spec_orig[:,1],specImg, grating)
self.fig.draw()
......
data/conf/CSST_GU.sensitivity.-1st.fits 100755 → 100644
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data/conf/CSST_GU.sensitivity.-2st.fits 100755 → 100644
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data/conf/CSST_GU.sensitivity.0st.fits 100755 → 100644
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data/conf/CSST_GU.sensitivity.1st.fits 100755 → 100644
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data/conf/CSST_GU.sensitivity.2st.fits 100755 → 100644
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data/conf/GU.Throughput.-1st.fits 100755 → 100644
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data/conf/GU.Throughput.2st.fits 100755 → 100644
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data/sed/PNG061.9+41.3__Kwitter_DDDM1_KP210596_id506.txt 0 → 100644
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This source diff could not be displayed because it is too large. You can view the blob instead.
example/sim_demo1.py
View file @ 12488ec1
'''
Author: xin zhangxinbjfu@gmail.com
Date: 2022-08-18 23:13:26
LastEditors: xin zhangxinbjfu@gmail.com
LastEditTime: 2023-02-24 01:05:33
FilePath: /undefined/Users/zhangxin/Work/SlitlessSim/sls_1d_sim/sls_1d_gitlab/sls_1d_spec/example/sim_demo1.py
Description: 这是默认设置,请设置`customMade`, 打开koroFileHeader查看配置 进行设置: https://github.com/OBKoro1/koro1FileHeader/wiki/%E9%85%8D%E7%BD%AE
'''
from SpecGen.SpecGenerator import SpecGenerator
from SpecGen.Config import Config
......@@ -15,9 +23,12 @@ if __name__ == '__main__':
config = Config(dataDir = dataDir)
sedFn = dataDir + 'sed/sed_44575.txt'
psf = galsim.Gaussian(fwhm=0.39)
specG = SpecGenerator(sedFn = sedFn, grating = 'GI', beam = 'A', aper = 2.0, xcenter = 2000,ycenter = 5000, p_size = 0.074, psf = psf, skybg = 0.3, dark = 0.02, readout = 5, t = 150, expNum = 1,config = config)
specG = SpecGenerator(sedFn = sedFn, grating = 'GI', beam = 'A', aper = 2.0, xcenter = 2000.,ycenter = 5000., p_size = 0.074, psf = psf, skybg = 0.3, dark = 0.02, readout = 5, t = 150., expNum = 1,config = config)
specTab, specImg, img, satPix=specG.generateSpec1dforStar()
# specG = SpecGenerator(sedFn = sedFn, grating = 'GI', beam = 'A', aper = 2.0, xcenter = 2000.,ycenter = 5000, p_size = 0.074, psf = psf, skybg = 0.3, dark = 0.02, readout = 5, t = 150., expNum = 1,config = config)
# specTab, specImg, img, satPix=specG.generateSpec1dforGal(s_n = 1.0, re = 0.5, pa = 90,q_ell = 1.0,limitfluxratio=0.8)
fits.writeto("specImg.fits",specImg,overwrite=True)
fits.writeto("DImg.fits",img,overwrite=True)
specTab.write("specTab.fits",overwrite=True)
......
install.sh
View file @ 12488ec1
python setup.py install
pip install -e .
\ No newline at end of file
python setup.py develop
pip install -e .
setup.py
View file @ 12488ec1
......@@ -2,7 +2,7 @@
Author: xin zhangxinbjfu@gmail.com
Date: 2022-04-29 16:13:01
LastEditors: xin zhangxinbjfu@gmail.com
LastEditTime: 2022-07-05 15:33:36
LastEditTime: 2023-02-21 16:31:07
FilePath: /undefined/Users/zhangxin/Work/SlitlessSim/sls_lit_demo/setup.py
Description: 这是默认设置,请设置`customMade`, 打开koroFileHeader查看配置 进行设置: https://github.com/OBKoro1/koro1FileHeader/wiki/%E9%85%8D%E7%BD%AE
'''
......@@ -42,10 +42,10 @@ setup(
packages=['SpecDisperser', 'SpecDisperser/disperse_c'],
install_requires=[
'galsim',
'numpy',
'scipy',
'astropy',
# 'galsim',
# 'numpy',
# 'scipy',
# 'astropy',
],
ext_modules = cythonize(extensions),
......
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