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* fitsbody.c
*
* Handle memory allocation for FITS bodies.
*
*%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
* This file part of: AstrOmatic FITS/LDAC library
* Copyright: (C) 1995-2010 IAP/CNRS/SorbonneU
* License: GNU General Public License
* AstrOmatic software is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
* AstrOmatic software is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
* You should have received a copy of the GNU General Public License
* along with AstrOmatic software.
* If not, see <http://www.gnu.org/licenses/>.
*
* Last modified: 11/02/2020
*
*%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
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#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <unistd.h>
#include <sys/types.h>
#ifdef HAVE_SYS_MMAN_H
#include <sys/mman.h>
#endif
#include "fitscat_defs.h"
#include "fitscat.h"
size_t body_maxram = BODY_DEFRAM,
body_maxvram = BODY_DEFVRAM,
body_ramleft, body_vramleft, body_ramflag;
int body_vmnumber;
char body_swapdirname[MAXCHARS] = BODY_DEFSWAPDIR;
/******* alloc_body ***********************************************************
PROTO PIXTYPE *alloc_body(tabstruct *tab,
void (*func)(PIXTYPE *ptr, int npix))
PURPOSE Allocate memory for and read a FITS data body (read-only). If not
enough RAM is available, a swap file is created.
INPUT Table (tab) structure.
OUTPUT Pointer to the mapped data if OK, or NULL otherwise.
NOTES The file pointer must be positioned at the beginning of the data.
AUTHOR E. Bertin (IAP)
VERSION 05/05/2001
***/
PIXTYPE *alloc_body(tabstruct *tab, void (*func)(PIXTYPE *ptr, int npix))
{
FILE *file;
PIXTYPE *buffer;
size_t npix, size, sizeleft, spoonful;
if (!body_ramflag)
{
body_ramleft = body_maxram;
body_vramleft = body_maxvram;
body_ramflag = 1;
}
/* Return a NULL pointer if size is zero */
if (!tab->tabsize)
return (PIXTYPE *)NULL;
/* Check that there is a cat parent structure and that the file is open */
if (tab->cat && !tab->cat->file)
error(EXIT_FAILURE, "*Internal Error*: Cannot access table: ",
tab->extname);
/* Decide if the data will go in physical memory or on swap-space */
npix = tab->tabsize/tab->bytepix;
size = npix*sizeof(PIXTYPE);
if (size < body_ramleft)
{
/*-- There should be enough RAM left: try to do a malloc() */
if ((tab->bodybuf = malloc(size)))
{
QFSEEK(tab->cat->file, tab->bodypos, SEEK_SET, tab->cat->filename);
read_body(tab, (PIXTYPE *)tab->bodybuf, npix);
/*---- Apply pixel processing */
if (func)
(*func)((PIXTYPE *)tab->bodybuf, npix);
body_ramleft -= size;
return (PIXTYPE *)tab->bodybuf;
}
else
tab->bodybuf = NULL;
}
if (size < body_vramleft)
{
/*-- Convert and copy the data to a swap file, and mmap() it */
if (!(buffer = malloc(DATA_BUFSIZE)))
return NULL;
sprintf(tab->swapname, "%s/vm%05ld_%05x.tmp",
body_swapdirname, (long)getpid(),
(unsigned int)++body_vmnumber) ;
if (!(file=fopen(tab->swapname, "wb+")))
error(EXIT_FAILURE, "*Error*: cannot create swap-file ", tab->swapname);
add_cleanupfilename(tab->swapname);
spoonful = (size%DATA_BUFSIZE);
if (!spoonful)
spoonful = DATA_BUFSIZE;
QFSEEK(tab->cat->file, tab->bodypos, SEEK_SET, tab->cat->filename);
read_body(tab, buffer, spoonful/sizeof(PIXTYPE));
/*-- Apply pixel processing */
if (func)
(*func)(buffer, spoonful/sizeof(PIXTYPE));
QFWRITE(buffer, spoonful, file, tab->swapname);
for (sizeleft = size; sizeleft -= spoonful;)
{
read_body(tab, buffer, (spoonful=DATA_BUFSIZE)/sizeof(PIXTYPE));
/*--- Apply pixel processing */
if (func)
(*func)(buffer, spoonful/sizeof(PIXTYPE));
QFWRITE(buffer, spoonful, file, tab->swapname);
}
free(buffer);
tab->bodybuf = mmap(NULL,size,PROT_READ,MAP_SHARED,fileno(file),(off_t)0);
fclose(file);
tab->swapflag = 1;
body_vramleft -= size;
/*-- Memory mapping problem */
if (tab->bodybuf == (void *)-1)
return NULL;
return (PIXTYPE *)tab->bodybuf;
}
/* If no memory left at all: forget it! */
return NULL;
}
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/******* alloc_ibody ***********************************************************
PROTO FLAGTYPE *alloc_ibody(tabstruct *tab,
void (*func)(FLAGTYPE *ptr, int npix))
PURPOSE Allocate memory for and read a FITS integer data body (read-only).
If not enough RAM is available, a swap file is created.
INPUT Table (tab) structure.
OUTPUT Pointer to the mapped data if OK, or NULL otherwise.
NOTES The file pointer must be positioned at the beginning of the data.
AUTHOR E. Bertin (IAP)
VERSION 30/01/2012
***/
FLAGTYPE *alloc_ibody(tabstruct *tab,
void (*func)(FLAGTYPE *ptr, int npix))
{
FILE *file;
FLAGTYPE *buffer;
size_t npix, size, sizeleft, spoonful;
if (!body_ramflag)
{
body_ramleft = body_maxram;
body_vramleft = body_maxvram;
body_ramflag = 1;
}
/* Return a NULL pointer if size is zero */
if (!tab->tabsize)
return (FLAGTYPE *)NULL;
/* Check that there is a cat parent structure and that the file is open */
if (tab->cat && !tab->cat->file)
error(EXIT_FAILURE, "*Internal Error*: Cannot access table: ",
tab->extname);
/* Decide if the data will go in physical memory or on swap-space */
npix = tab->tabsize/tab->bytepix;
size = npix*sizeof(FLAGTYPE);
if (size < body_ramleft)
{
/*-- There should be enough RAM left: try to do a malloc() */
if ((tab->bodybuf = malloc(size)))
{
QFSEEK(tab->cat->file, tab->bodypos, SEEK_SET, tab->cat->filename);
read_ibody(tab, (FLAGTYPE *)tab->bodybuf, npix);
/*---- Apply pixel processing */
if (func)
(*func)((FLAGTYPE *)tab->bodybuf, npix);
body_ramleft -= size;
return (FLAGTYPE *)tab->bodybuf;
}
else
tab->bodybuf = NULL;
}
if (size < body_vramleft)
{
/*-- Convert and copy the data to a swap file, and mmap() it */
if (!(buffer = malloc(DATA_BUFSIZE)))
return NULL;
sprintf(tab->swapname, "%s/vm%05ld_%05x.tmp",
body_swapdirname, (long)getpid(),
(unsigned int)++body_vmnumber) ;
if (!(file=fopen(tab->swapname, "wb+")))
error(EXIT_FAILURE, "*Error*: cannot create swap-file ", tab->swapname);
add_cleanupfilename(tab->swapname);
spoonful = (size%DATA_BUFSIZE);
if (!spoonful)
spoonful = DATA_BUFSIZE;
QFSEEK(tab->cat->file, tab->bodypos, SEEK_SET, tab->cat->filename);
read_ibody(tab, buffer, spoonful/sizeof(FLAGTYPE));
/*-- Apply pixel processing */
if (func)
(*func)(buffer, spoonful/sizeof(FLAGTYPE));
QFWRITE(buffer, spoonful, file, tab->swapname);
for (sizeleft = size; sizeleft -= spoonful;)
{
read_ibody(tab, buffer, (spoonful=DATA_BUFSIZE)/sizeof(FLAGTYPE));
/*--- Apply pixel processing */
if (func)
(*func)(buffer, spoonful/sizeof(FLAGTYPE));
QFWRITE(buffer, spoonful, file, tab->swapname);
}
free(buffer);
tab->bodybuf = mmap(NULL,size,PROT_READ,MAP_SHARED,fileno(file),(off_t)0);
fclose(file);
tab->swapflag = 1;
body_vramleft -= size;
/*-- Memory mapping problem */
if (tab->bodybuf == (void *)-1)
return NULL;
return (FLAGTYPE *)tab->bodybuf;
}
/* If no memory left at all: forget it! */
return NULL;
}
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/******* free_body ************************************************************
PROTO void free_body(tabstruct *tab)
PURPOSE Free FITS body data.
INPUT Tab structure.
OUTPUT -.
NOTES .
AUTHOR E. Bertin (IAP)
VERSION 04/03/2000
***/
void free_body(tabstruct *tab)
{
size_t size;
/* Free the body! (if allocated) */
if (tab->bodybuf)
{
size = (tab->tabsize/tab->bytepix)*sizeof(PIXTYPE);
if (tab->swapflag)
{
if (munmap(tab->bodybuf, size))
warning("Can't unmap ", tab->cat->filename);
tab->swapflag = 0;
tab->bodybuf = NULL;
body_vramleft += size;
if (unlink(tab->swapname))
warning("Can't delete ", tab->swapname);
remove_cleanupfilename(tab->swapname);
*tab->swapname = '\0';
}
else
{
QFREE(tab->bodybuf);
body_ramleft += size;
}
}
/* Free the decompression buffer if allocated */
if (tab->compress_buf)
QFREE(tab->compress_buf);
return;
}
/******* read_body ************************************************************
PROTO read_body(tabstruct *tab, PIXTYPE *ptr, long size)
PURPOSE Read floating point values from the body of a FITS table.
INPUT A pointer to the tab structure,
a pointer to the array in memory,
the number of elements to be read.
OUTPUT -.
NOTES .
AUTHOR E. Bertin (IAP)
VERSION 11/02/2020
***/
void read_body(tabstruct *tab, PIXTYPE *ptr, size_t size)
{
catstruct *cat;
static double bufdata0[DATA_BUFSIZE/sizeof(double)];
unsigned char cuval, cublank;
char *bufdata,
cval, cblank;
unsigned short suval, sublank, ashort=1;
ULONGLONG lluval, llublank;
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SLONGLONG llval, llblank;
int curval, dval, blankflag, bswapflag, ival, iblank;
size_t i, bowl, spoonful, npix;
PIXTYPE bs,bz;
/* a NULL cat structure indicates that no data can be read */
if (!(cat = tab->cat))
return;
bs = (PIXTYPE)tab->bscale;
bz = (PIXTYPE)tab->bzero;
blankflag = tab->blankflag;
bswapflag = *((char *)&ashort); // Byte-swapping flag
switch(tab->compress_type)
{
/*-- Uncompressed image */
case COMPRESS_NONE:
bowl = DATA_BUFSIZE/tab->bytepix;
spoonful = size<bowl?size:bowl;
for(; size>0; size -= spoonful)
{
if (spoonful>size)
spoonful = size;
bufdata = (char *)bufdata0;
QFREAD(bufdata, spoonful*tab->bytepix, cat->file, cat->filename);
switch(tab->bitpix)
{
case BP_BYTE:
if (blankflag)
{
if (tab->bitsgn)
{
cblank = (char)tab->blank;
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#pragma ivdep
for (i=spoonful; i--;)
*(ptr++) = ((cval = *(bufdata++)) == cblank)?
-BIG : cval*bs + bz;
}
else
{
cublank = (unsigned char)tab->blank;
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#pragma ivdep
for (i=spoonful; i--;)
*(ptr++) = ((cuval=*((unsigned char *)bufdata++))==cublank)?
-BIG : cuval*bs + bz;
}
}
else
{
if (tab->bitsgn)
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#pragma ivdep
for (i=spoonful; i--;)
*(ptr++) = *(bufdata++)*bs + bz;
else
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#pragma ivdep
for (i=spoonful; i--;)
*(ptr++) = *((unsigned char *)bufdata++)*bs + bz;
}
break;
case BP_SHORT:
if (bswapflag)
swapbytes(bufdata, 2, spoonful);
if (blankflag)
{
if (tab->bitsgn)
{
sblank = (short)tab->blank;
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(short))
*(ptr++) = ((sval = *((short *)bufdata)) == sblank)?
-BIG : sval*bs + bz;
}
else
{
sublank = (unsigned short)tab->blank;
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(unsigned short))
*(ptr++) = ((suval=*((unsigned short *)bufdata)) == sublank)?
-BIG : suval*bs + bz;
}
}
else
{
if (tab->bitsgn)
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(short))
*(ptr++) = *((short *)bufdata)*bs + bz;
else
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(unsigned short))
*(ptr++) = *((unsigned short *)bufdata)*bs + bz;
}
break;
case BP_LONG:
if (bswapflag)
swapbytes(bufdata, 4, spoonful);
if (blankflag)
{
if (tab->bitsgn)
{
iblank = (int)tab->blank;
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(int))
*(ptr++) = ((ival = *((int *)bufdata)) == iblank)?
-BIG : ival*bs + bz;
}
else
{
iublank = (unsigned int)tab->blank;
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(unsigned int))
*(ptr++) = ((iuval = *((unsigned int *)bufdata)) == iublank)?
-BIG : iuval*bs + bz;
}
}
else
{
if (tab->bitsgn)
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(int))
*(ptr++) = *((int *)bufdata)*bs + bz;
else
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(unsigned int))
*(ptr++) = *((unsigned int *)bufdata)*bs + bz;
}
break;
#ifdef HAVE_LONG_LONG_INT
case BP_LONGLONG:
if (bswapflag)
swapbytes(bufdata, 8, spoonful);
if (blankflag)
{
if (tab->bitsgn)
{
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llblank = (SLONGLONG)tab->blank;
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#pragma ivdep
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for (i=spoonful; i--; bufdata += sizeof(SLONGLONG))
*(ptr++) = ((llval = *((SLONGLONG *)bufdata)) == llblank)?
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-BIG : llval*bs + bz;
}
else
{
llublank = (ULONGLONG)tab->blank;
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(ULONGLONG))
*(ptr++) = ((lluval = *((ULONGLONG *)bufdata)) == llublank)?
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-BIG : lluval*bs + bz;
}
}
else
{
if (tab->bitsgn)
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#pragma ivdep
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for (i=spoonful; i--; bufdata += sizeof(SLONGLONG))
*(ptr++) = *((SLONGLONG *)bufdata)*bs + bz;
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(ULONGLONG))
*(ptr++) = *((ULONGLONG *)bufdata)*bs + bz;
}
break;
#endif
case BP_FLOAT:
if (bswapflag)
swapbytes(bufdata, 4, spoonful);
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(float))
*(ptr++) = ((0x7f800000&*(unsigned int *)bufdata) == 0x7f800000)?
-BIG : *((float *)bufdata)*bs + bz;
break;
case BP_DOUBLE:
if (bswapflag)
{
swapbytes(bufdata, 8, spoonful);
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(double))
*(ptr++) = ((0x7ff00000 & *(unsigned int *)(bufdata+4))
== 0x7ff00000)?
-BIG : *((double *)bufdata)*bs + bz;
}
else
{
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#pragma ivdep
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for (i=spoonful; i--; bufdata += sizeof(double))
*(ptr++) = ((0x7ff00000 & *(unsigned int *)bufdata)
== 0x7ff00000)?
-BIG : *((double *)bufdata)*bs + bz;
}
break;
default:
error(EXIT_FAILURE,"*FATAL ERROR*: unknown BITPIX type in ",
"read_body()");
break;
}
}
break;
/*-- Compressed image */
case COMPRESS_BASEBYTE:
if (!tab->compress_buf)
QMALLOC(tab->compress_buf, char, FBSIZE);
bufdata = tab->compress_bufptr;
curval = tab->compress_curval;
npix = tab->compress_npix;
while (size--)
{
if (!(npix--))
{
if (curval != tab->compress_checkval)
error(EXIT_FAILURE, "*Error*: invalid BASEBYTE checksum in ",
cat->filename);
bufdata = tab->compress_buf;
QFREAD(bufdata, FBSIZE, cat->file, cat->filename);
curval = 0;
if (bswapflag)
swapbytes(bufdata, 4, 1);
tab->compress_checkval = *((int *)bufdata);
bufdata += 4;
if (bswapflag)
swapbytes(bufdata, 2, 1);
npix = (int)(*((short *)bufdata))-1;
bufdata+=2;
}
if ((dval=(int)*(bufdata++))==-128)
{
if (bswapflag)
swapbytes(bufdata, 2, 1);
memcpy(&val16, bufdata, 2);
dval = (int)val16;
if (dval==-32768)
{
bufdata += 2;
if (bswapflag)
swapbytes(bufdata, 4, 1);
memcpy(&dval,bufdata,4);
bufdata += 4;
}
else
bufdata += 2;
}
*(ptr++) = dval*bs + bz;
curval += dval;
}
tab->compress_curval = curval;
tab->compress_bufptr = bufdata;
tab->compress_npix = npix;
break;
case COMPRESS_PREVPIX:
if (!tab->compress_buf)
QMALLOC(tab->compress_buf, char, FBSIZE);
bufdata = tab->compress_bufptr;
curval = tab->compress_curval;
npix = tab->compress_npix;
while (size--)
{
if (!(npix--))
{
if (curval != tab->compress_checkval)
error(EXIT_FAILURE, "*Error*: invalid PREV_PIX checksum in ",
tab->cat->filename);
bufdata = tab->compress_buf;
QFREAD(bufdata, FBSIZE, cat->file, cat->filename);
if (bswapflag)
swapbytes(bufdata, 2, 3);
curval = (int)*(short *)bufdata;
npix = (int)*(short *)(bufdata+=2)-1;
tab->compress_checkval = (int)(*(short *)(bufdata+=2));
bufdata+=4;
}
if ((dval=(int)*(bufdata++))==-128)
{
if (bswapflag)
swapbytes(bufdata, 2, 1);
memcpy(&val16, bufdata, 2);
curval = (int)val16;
bufdata += 2;
}
else
curval += dval;
*(ptr++) = curval*bs + bz;
}
tab->compress_curval = curval;
tab->compress_bufptr = bufdata;
tab->compress_npix = npix;
break;
default:
error(EXIT_FAILURE,"*Internal Error*: unknown compression mode in ",
"read_body()");
}
return;
}
/******* read_ibody ***********************************************************
PROTO read_ibody(tabstruct *tab, FLAGTYPE *ptr, long size)
PURPOSE Read integer values from the body of a FITS table.
INPUT A pointer to the tab structure,
a pointer to the array in memory,
the number of elements to be read.
OUTPUT -.
NOTES .
AUTHOR E. Bertin (IAP)
VERSION 11/02/2020
***/
void read_ibody(tabstruct *tab, FLAGTYPE *ptr, size_t size)
{
catstruct *cat;
static int bufdata0[DATA_BUFSIZE/sizeof(int)];
char *bufdata;
short val16;
unsigned short ashort = 1;
int i, bowl, spoonful, npix, curval, dval, bswapflag;
/* a NULL cat structure indicates that no data can be read */
if (!(cat = tab->cat))
return;
bswapflag = *((char *)&ashort); // Byte-swapping flag
switch(tab->compress_type)
{
/*-- Uncompressed image */
case COMPRESS_NONE:
bowl = DATA_BUFSIZE/tab->bytepix;
spoonful = size<bowl?size:bowl;
for(; size>0; size -= spoonful)
{
if (spoonful>size)
spoonful = size;
bufdata = (char *)bufdata0;
QFREAD(bufdata, spoonful*tab->bytepix, cat->file, cat->filename);
switch(tab->bitpix)
{
case BP_BYTE:
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#pragma ivdep
for (i=spoonful; i--;)
*(ptr++) = (FLAGTYPE)*((unsigned char *)bufdata++);
break;
case BP_SHORT:
if (bswapflag)
swapbytes(bufdata, 2, spoonful);
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committed
#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(unsigned short))
*(ptr++) = (FLAGTYPE)*((unsigned short *)bufdata);
break;
case BP_LONG:
if (bswapflag)
swapbytes(bufdata, 4, spoonful);
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#pragma ivdep
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for (i=spoonful; i--; bufdata += sizeof(unsigned int))
*(ptr++) = (FLAGTYPE)*((unsigned int *)bufdata);
#ifdef HAVE_LONG_LONG_INT
case BP_LONGLONG:
if (bswapflag)
swapbytes(bufdata, 8, spoonful);
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#pragma ivdep
for (i=spoonful; i--; bufdata += sizeof(ULONGLONG))
*(ptr++) = (FLAGTYPE)*((ULONGLONG *)bufdata);
break;
#endif
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error(EXIT_FAILURE,"*Error*: expected integers, not floats, in ",
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cat->filename);
break;
default:
error(EXIT_FAILURE,"*FATAL ERROR*: unknown BITPIX type in ",
"readdata()");
break;
}
}
break;
/*-- Compressed image */
case COMPRESS_BASEBYTE:
if (!tab->compress_buf)
QMALLOC(tab->compress_buf, char, FBSIZE);
bufdata = tab->compress_bufptr;
curval = tab->compress_curval;
npix = tab->compress_npix;
while (size--)
{
if (!(npix--))
{
if (curval != tab->compress_checkval)
error(EXIT_FAILURE, "*Error*: invalid BASEBYTE checksum in ",
cat->filename);
bufdata = tab->compress_buf;
QFREAD(bufdata, FBSIZE, cat->file, cat->filename);
curval = 0;
if (bswapflag)
swapbytes(bufdata, 4, 1);
tab->compress_checkval = *((int *)bufdata);
bufdata += 4;
if (bswapflag)
swapbytes(bufdata, 2, 1);
npix = (int)(*((short *)bufdata))-1;
bufdata+=2;
}
if ((dval=(int)*(bufdata++))==-128)
{
if (bswapflag)
swapbytes(bufdata, 2, 1);
memcpy(&val16, bufdata, 2);
dval = (int)val16;
if (dval==-32768)
{
bufdata += 2;
if (bswapflag)
swapbytes(bufdata, 4, 1);
memcpy(&dval,bufdata,4);
bufdata += 4;
}
else
bufdata += 2;
}
*(ptr++) = (FLAGTYPE)dval;
curval += dval;
}
tab->compress_curval = curval;
tab->compress_bufptr = bufdata;
tab->compress_npix = npix;
break;
case COMPRESS_PREVPIX:
if (!tab->compress_buf)
QMALLOC(tab->compress_buf, char, FBSIZE);
bufdata = tab->compress_bufptr;
curval = tab->compress_curval;
npix = tab->compress_npix;
while (size--)
{
if (!(npix--))
{
if (curval != tab->compress_checkval)
error(EXIT_FAILURE, "*Error*: invalid PREV_PIX checksum in ",
cat->filename);
bufdata = tab->compress_buf;
QFREAD(bufdata, FBSIZE, cat->file, cat->filename);
if (bswapflag)
swapbytes(bufdata, 2, 3);
curval = (int)*(short *)bufdata;
npix = (int)*(short *)(bufdata+=2)-1;
tab->compress_checkval = (int)(*(short *)(bufdata+=2));
bufdata+=4;
}
if ((dval=(int)*(bufdata++))==-128)
{
if (bswapflag)
swapbytes(bufdata, 2, 1);
memcpy(&val16, bufdata, 2);
curval = (int)val16;
bufdata += 2;
}
else
curval += dval;
*(ptr++) = (FLAGTYPE)curval;
}
tab->compress_curval = curval;
tab->compress_bufptr = bufdata;
tab->compress_npix = npix;
break;
default:
error(EXIT_FAILURE,"*Internal Error*: unknown compression mode in ",
"readdata()");
}
return;
}
/******* write_body ***********************************************************
PROTO write_body(tabstruct *tab, PIXTYPE *ptr, long size)
PURPOSE Write values to a FITS body.
INPUT A pointer to the tab structure,
a pointer to the array in memory,
the number of elements to be written.
OUTPUT -.
NOTES .
AUTHOR E. Bertin (IAP)
VERSION 11/02/2020
***/
void write_body(tabstruct *tab, PIXTYPE *ptr, size_t size)
{
static double bufdata0[DATA_BUFSIZE/sizeof(double)];
catstruct *cat;
char *cbufdata0;
size_t i, bowl, spoonful;
PIXTYPE bs,bz;
unsigned short ashort = 1;
int bswapflag;
bswapflag = *((char *)&ashort); // Byte-swapping flag
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bs = (PIXTYPE)tab->bscale;
bz = (PIXTYPE)tab->bzero;
cat = tab->cat;
if (!cat)
error(EXIT_FAILURE, "*Internal Error*: no parent cat structure for table ",
tab->extname);
cbufdata0 = (char *)bufdata0; /* A trick to remove gcc aliasing warnings */
switch(tab->compress_type)
{
/*-- Uncompressed image */
case COMPRESS_NONE:
bowl = DATA_BUFSIZE/tab->bytepix;
spoonful = size<bowl?size:bowl;
for(; size>0; size -= spoonful)
{
if (spoonful>size)
spoonful = size;
switch(tab->bitpix)
{
case BP_BYTE:
if (tab->bitsgn)
{
char *bufdata = (char *)cbufdata0;
Emmanuel Bertin
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#pragma ivdep
for (i=spoonful; i--;)
*(bufdata++) = (char)((*(ptr++)-bz)/bs+0.49999);
}
else
{
unsigned char *bufdata = (unsigned char *)cbufdata0;
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#pragma ivdep
Emmanuel Bertin
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*(bufdata++) = (unsigned char)((*(ptr++)-bz)/bs+0.49999);;
}
break;
case BP_SHORT:
if (tab->bitsgn)
{
short *bufdata = (short *)cbufdata0;
Emmanuel Bertin
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#pragma ivdep
for (i=spoonful; i--;)
*(bufdata++) = (short)((*(ptr++)-bz)/bs+0.49999);
}
else
{
unsigned short *bufdata = (unsigned short *)cbufdata0;
Emmanuel Bertin
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#pragma ivdep
for (i=spoonful; i--;)
*(bufdata++) = (unsigned short)((*(ptr++)-bz)/bs+0.49999);
}
if (bswapflag)
swapbytes(cbufdata0, 2, spoonful);
break;
case BP_LONG:
if (tab->bitsgn)
{
int *bufdata = (int *)cbufdata0;
Emmanuel Bertin
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#pragma ivdep
for (i=spoonful; i--;)
*(bufdata++) = (int)((*(ptr++)-bz)/bs+0.49999);
}
else
{
unsigned int *bufdata = (unsigned int *)cbufdata0;
Emmanuel Bertin
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#pragma ivdep
for (i=spoonful; i--;)
*(bufdata++) = (unsigned int)((*(ptr++)-bz)/bs+0.49999);
}
if (bswapflag)
swapbytes(cbufdata0, 4, spoonful);
break;
#ifdef HAVE_LONG_LONG_INT
case BP_LONGLONG:
if (tab->bitsgn)
{
Emmanuel Bertin
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SLONGLONG *bufdata = (SLONGLONG *)cbufdata0;
Emmanuel Bertin
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#pragma ivdep
for (i=spoonful; i--;)
Emmanuel Bertin
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*(bufdata++) = (SLONGLONG)((*(ptr++)-bz)/bs+0.49999);
}
else
{
ULONGLONG *bufdata = (ULONGLONG *)cbufdata0;
Emmanuel Bertin
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#pragma ivdep
for (i=spoonful; i--;)
*(bufdata++) = (ULONGLONG)((*(ptr++)-bz)/bs+0.49999);
}
if (bswapflag)
swapbytes(cbufdata0, 8, spoonful);
break;
#endif
case BP_FLOAT:
{
float *bufdata = (float *)cbufdata0;
Emmanuel Bertin
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#pragma ivdep
for (i=spoonful; i--;)
*(bufdata++) = (*(ptr++)-bz)/bs;
if (bswapflag)
swapbytes(cbufdata0, 4, spoonful);
}
break;
case BP_DOUBLE:
{
double *bufdata = (double *)cbufdata0;
Emmanuel Bertin
committed
#pragma ivdep
for (i=spoonful; i--;)
*(bufdata++) = (double)(*(ptr++)-bz)/bs;
if (bswapflag)
swapbytes(cbufdata0, 8, spoonful);
}
break;
default:
Emmanuel Bertin
committed
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error(EXIT_FAILURE,"*FATAL ERROR*: unknown BITPIX type in ",
"read_body()");
break;
}
QFWRITE(cbufdata0, spoonful*tab->bytepix, cat->file, cat->filename);
}
break;
/*-- Compressed image */
case COMPRESS_BASEBYTE:
break;
case COMPRESS_PREVPIX:
break;
default:
error(EXIT_FAILURE,"*Internal Error*: unknown compression mode in ",
"read_body()");
}
return;
}
/******* write_ibody ***********************************************************
PROTO write_ibody(tabstruct *tab, FLAGTYPE *ptr, long size)
PURPOSE Write integer values to a FITS body.
INPUT A pointer to the tab structure,
a pointer to the array in memory,
the number of elements to be written.
OUTPUT -.
NOTES .
AUTHOR E. Bertin (IAP)
VERSION 11/02/2020
Emmanuel Bertin
committed
***/
void write_ibody(tabstruct *tab, FLAGTYPE *ptr, size_t size)
{
static FLAGTYPE bufdata0[DATA_BUFSIZE/sizeof(FLAGTYPE)];
catstruct *cat;
char *cbufdata0;
size_t i, bowl, spoonful;
unsigned short ashort = 1;
Emmanuel Bertin
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double bs,bz;
int bswapflag;
bswapflag = *((char *)&ashort); // Byte-swapping flag
Emmanuel Bertin
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bs = tab->bscale;
bz = tab->bzero;
cat = tab->cat;