update submission file for Pukou usage

config/config_overall.yaml

@@ -11,7 +11,7 @@
 # can add some of the command-line arguments here as well;
 # ok to pass either way or both, as long as they are consistent
 work_dir: "/public/home/fangyuedong/project/workplace/"
-run_name: "magnification_test"
+run_name: "no_nonlinearity_test"
 
 # Project cycle and run counter are used to name the outputs
 project_cycle: 9
@@ -32,11 +32,13 @@ run_option:
 catalog_options:
   input_path:
     cat_dir: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/"
-    star_cat: "starcat/"
+    # star_cat: "starcat/"
+    star_cat: "starcat_C9/"
     galaxy_cat: "qsocat/cat2CSSTSim_bundle-50sqDeg/"
 
   SED_templates_path:
-    star_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/SpecLib.hdf5"
+    # star_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/SpecLib.hdf5"
+    star_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/starcat_C9/"
     galaxy_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/sedlibs/"
     AGN_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/qsocat/qsosed/"
 
@@ -44,7 +46,7 @@ catalog_options:
   star_only: NO
 
   # Only simulate galaxies?
-  galaxy_only: YES
+  galaxy_only: NO
 
   # rotate galaxy ellipticity
   rotateEll: 0. # [degree]
@@ -57,7 +59,8 @@ obs_setting:
   # if you just want to run default pointing:
   # - pointing_dir: null
   # - pointing_file: null
-  pointing_file: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/pointing50_C9/pointing_50_1_n.dat"
+  # pointing_file: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/pointing50_C9/pointing_50_1_n.dat"
+  pointing_file: "/public/home/fangyuedong/project/unit_test_data/pointing_for_test.dat"
 
   obs_config_file: "/public/home/fangyuedong/project/csst_msc_sim/config/obs_config_SCI_WIDE_phot.yaml"
 
@@ -65,7 +68,7 @@ obs_setting:
   # - give a list of indexes of pointings: [ip_1, ip_2...]
   # - run all pointings: null
   # Note: only valid when a pointing list is specified
-  run_pointings: [0]
+  run_pointings: [1]
 
   # Whether to enable astrometric modeling
   enable_astrometric_model: True

config/obs_config_SCI_WIDE_phot.yaml

@@ -16,7 +16,7 @@ obs_id: "00000001" # this setting will only be used if pointing list file is not
 # Define list of chips
 # run_chips: [6,7,8,9,11,12,13,14,15,16,17,18,19,20,22,23,24,25]
 #run_chips: [1,2,3,4,5,10,21,26,27,28,29,30]
-run_chips: [8]
+run_chips: [9]
 
 # Define observation sequence
 call_sequence:
@@ -63,7 +63,7 @@ call_sequence:
     dead_pixels: YES
     bad_columns: YES
   # Apply response nonlinearity
-  nonlinearity: {}
+  # nonlinearity: {}
   # Apply CCD Saturation & Blooming
   blooming: {}
   # Run CTE simulation

run_C6.pbs

@@ -2,9 +2,9 @@
 
 #SBATCH -J CSSTSim
 #SBATCH -N 1
-#SBATCH --ntasks-per-node=40
+#SBATCH --ntasks-per-node=6
 #SBATCH -p debug
-#SBATCH --mem=240G
+#SBATCH --mem=60G
 
 module load mpi/hpcx/2.4.1/gcc-7.3.1
 date
@@ -12,4 +12,4 @@ date
 #限定单节点任务数
 srun hostname -s | sort -n | awk -F"-" '{print $2}' | uniq > pnodes
 
-mpirun -mca pml ucx -x  UCX_NET_DEVICES=mlx5_0:1 -machinefile pnodes -np 40 --map-by node python3 /public/home/fangyuedong/project/csst_msc_sim/run_sim.py  --config_file config_overall.yaml --catalog C6_50sqdeg -c /public/home/fangyuedong/project/csst_msc_sim/config
\ No newline at end of file
+mpirun -mca pml ucx -x  UCX_NET_DEVICES=mlx5_0:1 -machinefile pnodes -np 6 --map-by node python3 /public/home/fangyuedong/project/csst_msc_sim/run_sim.py  --config_file config_overall.yaml --catalog C6_50sqdeg_ns -c /public/home/fangyuedong/project/csst_msc_sim/config
\ No newline at end of file