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Commit 0a7d5af0 authored by Fang Yuedong's avatar Fang Yuedong
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update submission file for Pukou usage

parent cb20ea70
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config/config_overall.yaml
View file @ 0a7d5af0
...@@ -11,7 +11,7 @@ ...@@ -11,7 +11,7 @@
# can add some of the command-line arguments here as well; # can add some of the command-line arguments here as well;
# ok to pass either way or both, as long as they are consistent # ok to pass either way or both, as long as they are consistent
work_dir: "/public/home/fangyuedong/project/workplace/" work_dir: "/public/home/fangyuedong/project/workplace/"
run_name: "magnification_test" run_name: "no_nonlinearity_test"
# Project cycle and run counter are used to name the outputs # Project cycle and run counter are used to name the outputs
project_cycle: 9 project_cycle: 9
...@@ -32,11 +32,13 @@ run_option: ...@@ -32,11 +32,13 @@ run_option:
catalog_options: catalog_options:
input_path: input_path:
cat_dir: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/" cat_dir: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/"
star_cat: "starcat/" # star_cat: "starcat/"
star_cat: "starcat_C9/"
galaxy_cat: "qsocat/cat2CSSTSim_bundle-50sqDeg/" galaxy_cat: "qsocat/cat2CSSTSim_bundle-50sqDeg/"
SED_templates_path: SED_templates_path:
star_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/SpecLib.hdf5" # star_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/SpecLib.hdf5"
star_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/starcat_C9/"
galaxy_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/sedlibs/" galaxy_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/sedlibs/"
AGN_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/qsocat/qsosed/" AGN_SED: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/qsocat/qsosed/"
...@@ -44,7 +46,7 @@ catalog_options: ...@@ -44,7 +46,7 @@ catalog_options:
star_only: NO star_only: NO
# Only simulate galaxies? # Only simulate galaxies?
galaxy_only: YES galaxy_only: NO
# rotate galaxy ellipticity # rotate galaxy ellipticity
rotateEll: 0. # [degree] rotateEll: 0. # [degree]
...@@ -57,7 +59,8 @@ obs_setting: ...@@ -57,7 +59,8 @@ obs_setting:
# if you just want to run default pointing: # if you just want to run default pointing:
# - pointing_dir: null # - pointing_dir: null
# - pointing_file: null # - pointing_file: null
pointing_file: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/pointing50_C9/pointing_50_1_n.dat" # pointing_file: "/public/share/yangxuliu/CSSOSDataProductsSims/data_50sqDeg/pointing50_C9/pointing_50_1_n.dat"
pointing_file: "/public/home/fangyuedong/project/unit_test_data/pointing_for_test.dat"
obs_config_file: "/public/home/fangyuedong/project/csst_msc_sim/config/obs_config_SCI_WIDE_phot.yaml" obs_config_file: "/public/home/fangyuedong/project/csst_msc_sim/config/obs_config_SCI_WIDE_phot.yaml"
...@@ -65,7 +68,7 @@ obs_setting: ...@@ -65,7 +68,7 @@ obs_setting:
# - give a list of indexes of pointings: [ip_1, ip_2...] # - give a list of indexes of pointings: [ip_1, ip_2...]
# - run all pointings: null # - run all pointings: null
# Note: only valid when a pointing list is specified # Note: only valid when a pointing list is specified
run_pointings: [0] run_pointings: [1]
# Whether to enable astrometric modeling # Whether to enable astrometric modeling
enable_astrometric_model: True enable_astrometric_model: True
......
config/obs_config_SCI_WIDE_phot.yaml
View file @ 0a7d5af0
...@@ -16,7 +16,7 @@ obs_id: "00000001" # this setting will only be used if pointing list file is not ...@@ -16,7 +16,7 @@ obs_id: "00000001" # this setting will only be used if pointing list file is not
# Define list of chips # Define list of chips
# run_chips: [6,7,8,9,11,12,13,14,15,16,17,18,19,20,22,23,24,25] # run_chips: [6,7,8,9,11,12,13,14,15,16,17,18,19,20,22,23,24,25]
#run_chips: [1,2,3,4,5,10,21,26,27,28,29,30] #run_chips: [1,2,3,4,5,10,21,26,27,28,29,30]
run_chips: [8] run_chips: [9]
# Define observation sequence # Define observation sequence
call_sequence: call_sequence:
...@@ -63,7 +63,7 @@ call_sequence: ...@@ -63,7 +63,7 @@ call_sequence:
dead_pixels: YES dead_pixels: YES
bad_columns: YES bad_columns: YES
# Apply response nonlinearity # Apply response nonlinearity
nonlinearity: {} # nonlinearity: {}
# Apply CCD Saturation & Blooming # Apply CCD Saturation & Blooming
blooming: {} blooming: {}
# Run CTE simulation # Run CTE simulation
......
run_C6.pbs
View file @ 0a7d5af0
...@@ -2,9 +2,9 @@ ...@@ -2,9 +2,9 @@
#SBATCH -J CSSTSim #SBATCH -J CSSTSim
#SBATCH -N 1 #SBATCH -N 1
#SBATCH --ntasks-per-node=40 #SBATCH --ntasks-per-node=6
#SBATCH -p debug #SBATCH -p debug
#SBATCH --mem=240G #SBATCH --mem=60G
module load mpi/hpcx/2.4.1/gcc-7.3.1 module load mpi/hpcx/2.4.1/gcc-7.3.1
date date
...@@ -12,4 +12,4 @@ date ...@@ -12,4 +12,4 @@ date
#限定单节点任务数 #限定单节点任务数
srun hostname -s | sort -n | awk -F"-" '{print $2}' | uniq > pnodes srun hostname -s | sort -n | awk -F"-" '{print $2}' | uniq > pnodes
mpirun -mca pml ucx -x UCX_NET_DEVICES=mlx5_0:1 -machinefile pnodes -np 40 --map-by node python3 /public/home/fangyuedong/project/csst_msc_sim/run_sim.py --config_file config_overall.yaml --catalog C6_50sqdeg -c /public/home/fangyuedong/project/csst_msc_sim/config mpirun -mca pml ucx -x UCX_NET_DEVICES=mlx5_0:1 -machinefile pnodes -np 6 --map-by node python3 /public/home/fangyuedong/project/csst_msc_sim/run_sim.py --config_file config_overall.yaml --catalog C6_50sqdeg_ns -c /public/home/fangyuedong/project/csst_msc_sim/config
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