update submit script for Pukou machine

# can add some of the command-line arguments here as well;

# ok to pass either way or both, as long as they are consistent

work_dir: "/public/home/fangyuedong/project/workplace/"

run_name: "QSO_50sqdeg_test"

run_name: "magnification_test"

# Project cycle and run counter are used to name the outputs

project_cycle: 9

#!/bin/bash

#PBS -N C6_TEST

#PBS -l walltime=70:00:00

#PBS -j oe

##PBS -l nodes=wcl-1:ppn=16+wcl-2:ppn=16

#PBS -q batch

#PBS -u fangyuedong

cd $PBS_O_WORKDIR

#SBATCH -J CSSTSim

#SBATCH -N 1

#SBATCH --ntasks-per-node=40

#SBATCH -p debug

#SBATCH --mem=240G

NP=384

hostfile=wcl-1,wcl-2,wcl-3,wcl-4,wcl-5,wcl-6

module load mpi/hpcx/2.4.1/gcc-7.3.1

date

mpirun --oversubscribe -H $hostfile -np $NP python /share/home/fangyuedong/new_sim/csst-simulation/run_sim.py \

    --config_file config_C6.yaml \

    --catalog C6_Catalog \

    -c /share/home/fangyuedong/new_sim/csst-simulation/config

    # --config_file config_50sqdeg.yaml \

    # --catalog C6_50sqdeg \

    # -c /share/home/fangyuedong/new_sim/csst-simulation/config

#限定单节点任务数

srun hostname -s | sort -n | awk -F"-" '{print $2}' | uniq > pnodes

mpirun -mca pml ucx -x  UCX_NET_DEVICES=mlx5_0:1 -machinefile pnodes -np 40 --map-by node python3 /public/home/fangyuedong/project/csst_msc_sim/run_sim.py  --config_file config_overall.yaml --catalog C6_50sqdeg -c /public/home/fangyuedong/project/csst_msc_sim/config

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