MockObject.py 30.8 KB
Newer Older
Fang Yuedong's avatar
Fang Yuedong committed
1
2
3
4
5
6
7
8
9
10
11
12
13
import os
import galsim
import numpy as np
import astropy.constants as cons
from astropy import wcs
from astropy.table import Table
import astropy.io.fits as fitsio

from observation_sim.mock_objects._util import magToFlux, VC_A, convolveGaussXorders, convolveImg
from observation_sim.mock_objects._util import integrate_sed_bandpass, getNormFactorForSpecWithABMAG, getObservedSED, \
    getABMAG
from observation_sim.mock_objects.SpecDisperser import SpecDisperser

14
15
from observation_sim.instruments.chip import chip_utils

Fang Yuedong's avatar
Fang Yuedong committed
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63

class MockObject(object):
    def __init__(self, param, logger=None):
        self.param = param
        for key in self.param:
            setattr(self, key, self.param[key])

        if self.param["star"] == 0:
            self.type = "galaxy"
        elif self.param["star"] == 1:
            self.type = "star"
        elif self.param["star"] == 2:
            self.type = "quasar"
        # mock_stamp_START
        elif self.param["star"] == 3:
            self.type = "stamp"
        # mock_stamp_END
        # for calibration
        elif self.param["star"] == 4:
            self.type = "calib"
        # END

        self.sed = None
        self.fd_shear = None
        # Place holder for outputs
        self.additional_output_str = ""
        self.logger = logger

    def getMagFilter(self, filt):
        if filt.filter_type in ["GI", "GV", "GU"]:
            return self.param["mag_use_normal"]
        return self.param["mag_%s" % filt.filter_type.lower()]

    def getFluxFilter(self, filt):
        return self.param["flux_%s" % filt.filter_type.lower()]

    def getNumPhotons(self, flux, tel, exptime=150.):
        pupil_area = tel.pupil_area * (100.) ** 2  # m^2 to cm^2
        return flux * pupil_area * exptime

    def getElectronFluxFilt(self, filt, tel, exptime=150.):
        # photonEnergy = filt.getPhotonE()
        # flux = magToFlux(self.getMagFilter(filt))
        # factor = 1.0e4 * flux/photonEnergy * VC_A * (1.0/filt.blue_limit - 1.0/filt.red_limit)
        # return factor * filt.efficiency * tel.pupil_area * exptime
        flux = self.getFluxFilter(filt)
        return flux * tel.pupil_area * exptime

64
65
66
    def getPosWorld(self, ra_offset=0., dec_offset=0.):
        ra = self.param["ra"] + ra_offset
        dec = self.param["dec"] + dec_offset
Fang Yuedong's avatar
Fang Yuedong committed
67
68
        return galsim.CelestialCoord(ra=ra * galsim.degrees, dec=dec * galsim.degrees)

69
70
    def getPosImg_Offset_WCS(self, img, fdmodel=None, chip=None, verbose=True, chip_wcs=None, img_header=None, ra_offset=0., dec_offset=0.):
        self.posImg = img.wcs.toImage(self.getPosWorld(ra_offset, dec_offset))
Fang Yuedong's avatar
Fang Yuedong committed
71
72
73
74
75
76
77
78
79
80
        self.localWCS = img.wcs.local(self.posImg)
        # Apply field distortion model
        if (fdmodel is not None) and (chip is not None):
            if verbose:
                print("\n")
                print("Before field distortion:\n")
                print("x = %.2f, y = %.2f\n" %
                      (self.posImg.x, self.posImg.y), flush=True)
            self.posImg, self.fd_shear = fdmodel.get_distorted(
                chip=chip, pos_img=self.posImg)
81
82
            if self.posImg is None:
                return None, None, None, None, None
Fang Yuedong's avatar
Fang Yuedong committed
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
            if verbose:
                print("After field distortion:\n")
                print("x = %.2f, y = %.2f\n" %
                      (self.posImg.x, self.posImg.y), flush=True)

        x, y = self.posImg.x + 0.5, self.posImg.y + 0.5
        self.x_nominal = int(np.floor(x + 0.5))
        self.y_nominal = int(np.floor(y + 0.5))
        dx = x - self.x_nominal
        dy = y - self.y_nominal
        self.offset = galsim.PositionD(dx, dy)

        # Deal with chip rotation
        if chip_wcs is not None:
            self.chip_wcs = chip_wcs
        elif img_header is not None:
            self.chip_wcs = galsim.FitsWCS(header=img_header)
        else:
            self.chip_wcs = None

        return self.posImg, self.offset, self.localWCS, self.chip_wcs, self.fd_shear

    def getRealPos(self, img, global_x=0., global_y=0., img_real_wcs=None):
        img_global_pos = galsim.PositionD(global_x, global_y)
        cel_pos = img.wcs.toWorld(img_global_pos)
        realPos = img_real_wcs.toImage(cel_pos)
        return realPos

    def drawObj_multiband(self, tel, pos_img, psf_model, bandpass_list, filt, chip, nphotons_tot=None, g1=0, g2=0,
                          exptime=150., fd_shear=None):
Zhang Xin's avatar
pep8    
Zhang Xin committed
113
        if nphotons_tot is None:
Fang Yuedong's avatar
Fang Yuedong committed
114
115
116
117
118
119
120
121
122
123
124
125
126
            nphotons_tot = self.getElectronFluxFilt(filt, tel, exptime)
        # print("nphotons_tot = ", nphotons_tot)

        try:
            full = integrate_sed_bandpass(
                sed=self.sed, bandpass=filt.bandpass_full)
        except Exception as e:
            print(e)
            if self.logger:
                self.logger.error(e)
            return 2, None
        # Set Galsim Parameters
        if self.getMagFilter(filt) <= 15:
127
            folding_threshold = 5.e-8
Fang Yuedong's avatar
Fang Yuedong committed
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
        else:
            folding_threshold = 5.e-3
        gsp = galsim.GSParams(folding_threshold=folding_threshold)

        # Get real image position of object (deal with chip rotation w.r.t its center)
        self.real_pos = self.getRealPos(chip.img, global_x=self.posImg.x, global_y=self.posImg.y,
                                        img_real_wcs=self.chip_wcs)
        x, y = self.real_pos.x + 0.5, self.real_pos.y + 0.5
        x_nominal = int(np.floor(x + 0.5))
        y_nominal = int(np.floor(y + 0.5))
        dx = x - x_nominal
        dy = y - y_nominal
        offset = galsim.PositionD(dx, dy)
        # Get real local wcs of object (deal with chip rotation w.r.t its center)
        chip_wcs_local = self.chip_wcs.local(self.real_pos)
        is_updated = 0

        # Loop over all sub-bandpasses
        for i in range(len(bandpass_list)):
            bandpass = bandpass_list[i]
            try:
                sub = integrate_sed_bandpass(sed=self.sed, bandpass=bandpass)
            except Exception as e:
                print(e)
                if self.logger:
                    self.logger.error(e)
                continue
            ratio = sub / full
            if not (ratio == -1 or (ratio != ratio)):
                nphotons = ratio * nphotons_tot
            else:
                continue

            # nphotons_sum += nphotons
            # print("nphotons_sub-band_%d = %.2f"%(i, nphotons))

            # Get PSF model
165
166
167
            EXTRA = False
            if self.getMagFilter(filt) <= filt.mag_saturation-1.:
                EXTRA = True
Fang Yuedong's avatar
Fang Yuedong committed
168
            psf, pos_shear = psf_model.get_PSF(chip=chip, pos_img=pos_img, bandpass=bandpass,
169
                                               folding_threshold=folding_threshold, extrapolate=EXTRA)
Fang Yuedong's avatar
Fang Yuedong committed
170
171
172
173
174
            # star = galsim.DeltaFunction(gsparams=gsp)
            # star = star.withFlux(nphotons)
            # star = galsim.Convolve(psf, star)
            star = psf.withFlux(nphotons)

Fang Yuedong's avatar
pep8    
Fang Yuedong committed
175
            if EXTRA:
176
177
178
                stamp = star.drawImage(method='no_pixel', wcs=chip_wcs_local, offset=offset)
            else:
                stamp = star.drawImage(wcs=chip_wcs_local, offset=offset)
Fang Yuedong's avatar
Fang Yuedong committed
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
            if np.sum(np.isnan(stamp.array)) > 0:
                continue
            stamp.setCenter(x_nominal, y_nominal)
            bounds = stamp.bounds & galsim.BoundsI(
                0, chip.npix_x - 1, 0, chip.npix_y - 1)
            if bounds.area() > 0:
                chip.img.setOrigin(0, 0)
                chip.img[bounds] += stamp[bounds]
                is_updated = 1
                chip.img.setOrigin(chip.bound.xmin, chip.bound.ymin)
                del stamp

        if is_updated == 0:
            # Return code 0: object has missed this detector
            print("obj %s missed" % (self.id))
            if self.logger:
                self.logger.info("obj %s missed" % (self.id))
            return 0, pos_shear
        return 1, pos_shear  # Return code 1: draw sucesss

    def addSLStoChipImage(self, sdp=None, chip=None, xOrderSigPlus=None, local_wcs=None):
        spec_orders = sdp.compute_spec_orders()
        for k, v in spec_orders.items():
            img_s = v[0]
            #########################################################
            # DEBUG
            #########################################################
            # print("before convolveGaussXorders, img_s:", img_s)
207
208
209
210
211
            # nan_ids = np.isnan(img_s)
            # if img_s[nan_ids].shape[0] > 0:
            #     # img_s[nan_ids] = 0
            #     print("DEBUG: before convolveGaussXorders specImg nan num is",
            #           img_s[nan_ids].shape[0])
Fang Yuedong's avatar
Fang Yuedong committed
212
            #########################################################
213
214
            # img_s, orig_off = convolveGaussXorders(img_s, xOrderSigPlus[k])
            orig_off = 0
Fang Yuedong's avatar
Fang Yuedong committed
215
216
217
218
219
220
            origin_order_x = v[1] - orig_off
            origin_order_y = v[2] - orig_off
            #########################################################
            # DEBUG
            #########################################################
            # print("DEBUG: orig_off is", orig_off)
221
222
223
224
            # nan_ids = np.isnan(img_s)
            # if img_s[nan_ids].shape[0] > 0:
            #     img_s[nan_ids] = 0
            #     print("DEBUG: specImg nan num is", img_s[nan_ids].shape[0])
Fang Yuedong's avatar
Fang Yuedong committed
225
            #########################################################
226
            stamp = galsim.ImageF(img_s)
Fang Yuedong's avatar
Fang Yuedong committed
227
228
229
230
231
232
233
234
            stamp.wcs = local_wcs
            stamp.setOrigin(origin_order_x, origin_order_y)

            bounds = stamp.bounds & galsim.BoundsI(
                0, chip.npix_x - 1, 0, chip.npix_y - 1)
            if bounds.area() == 0:
                continue
            chip.img.setOrigin(0, 0)
235
            chip.img[bounds] = chip.img[bounds]+stamp[bounds]
Fang Yuedong's avatar
Fang Yuedong committed
236
237
238
239
240
241
            chip.img.setOrigin(chip.bound.xmin, chip.bound.ymin)
            del stamp
        del spec_orders

    def addSLStoChipImageWithPSF(self, sdp=None, chip=None, pos_img_local=[1, 1], psf_model=None, bandNo=1, grating_split_pos=3685, local_wcs=None, pos_img=None):
        spec_orders = sdp.compute_spec_orders()
242
243
244
245
        pos_shear = galsim.Shear(e=0., beta=(np.pi/2)*galsim.radians)
        if chip.slsPSFOptim:
            for k, v in spec_orders.items():
                img_s = v[0]
Zhang Xin's avatar
pep8    
Zhang Xin committed
246

247
248
249
250
251
252
                nan_ids = np.isnan(img_s)
                if img_s[nan_ids].shape[0] > 0:
                    img_s[nan_ids] = 0
                    print("DEBUG: specImg nan num is", img_s[nan_ids].shape[0])
                #########################################################
                # img_s, orig_off = convolveImg(img_s, psf_img_m)
Zhang Xin's avatar
pep8    
Zhang Xin committed
253
                orig_off = [0, 0]
254
255
256
257
258
259
260
261
262
263
264
265
266
267
                origin_order_x = v[1] - orig_off[0]
                origin_order_y = v[2] - orig_off[1]

                specImg = galsim.ImageF(img_s)

                specImg.wcs = local_wcs
                specImg.setOrigin(origin_order_x, origin_order_y)

                bounds = specImg.bounds & galsim.BoundsI(
                    0, chip.npix_x - 1, 0, chip.npix_y - 1)
                if bounds.area() == 0:
                    continue

                # orders = {'A': 'order1', 'B': 'order0', 'C': 'order2', 'D': 'order-1', 'E': 'order-2'}
Zhang Xin's avatar
pep8    
Zhang Xin committed
268
269
                orders = {'A': 'order1', 'B': 'order0',
                          'C': 'order0', 'D': 'order0', 'E': 'order0'}
270
271
272
273
                gratingN = chip_utils.getChipSLSGratingID(chip.chipID)[1]
                if pos_img_local[0] < grating_split_pos:
                    gratingN = chip_utils.getChipSLSGratingID(chip.chipID)[0]

Zhang Xin's avatar
pep8    
Zhang Xin committed
274
275
276
277
278
279
                chip.img_stack[gratingN][orders[k]
                                         ]['w' + str(bandNo)].setOrigin(0, 0)
                chip.img_stack[gratingN][orders[k]]['w' + str(
                    bandNo)][bounds] = chip.img_stack[gratingN][orders[k]]['w' + str(bandNo)][bounds] + specImg[bounds]
                chip.img_stack[gratingN][orders[k]]['w' +
                                                    str(bandNo)].setOrigin(chip.bound.xmin, chip.bound.ymin)
280

281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
        else:
            for k, v in spec_orders.items():
                # img_s = v[0]
                # # print(bandNo,k)
                # try:
                #     psf, pos_shear = psf_model.get_PSF(
                #         chip, pos_img_local=pos_img_local, bandNo=bandNo, galsimGSObject=True, g_order=k, grating_split_pos=grating_split_pos)
                # except:
                #     psf, pos_shear = psf_model.get_PSF(chip=chip, pos_img=pos_img)

                # psf_img = psf.drawImage(nx=100, ny=100, wcs=local_wcs)

                # psf_img_m = psf_img.array

                # #########################################################
                # # DEBUG
                # #########################################################
                # # ids_p = psf_img_m < 0
                # # psf_img_m[ids_p] = 0

                # # from astropy.io import fits
                # # fits.writeto(str(bandNo) + '_' + str(k) + '_psf.fits', psf_img_m)

                # # print("DEBUG: orig_off is", orig_off)
                # nan_ids = np.isnan(img_s)
                # if img_s[nan_ids].shape[0] > 0:
                #     img_s[nan_ids] = 0
                #     print("DEBUG: specImg nan num is", img_s[nan_ids].shape[0])
                # #########################################################
                # img_s, orig_off = convolveImg(img_s, psf_img_m)
                # origin_order_x = v[1] - orig_off[0]
                # origin_order_y = v[2] - orig_off[1]

                # specImg = galsim.ImageF(img_s)
                # # photons = galsim.PhotonArray.makeFromImage(specImg)
                # # photons.x += origin_order_x
                # # photons.y += origin_order_y

                # # xlen_imf = int(specImg.xmax - specImg.xmin + 1)
                # # ylen_imf = int(specImg.ymax - specImg.ymin + 1)
                # # stamp = galsim.ImageF(xlen_imf, ylen_imf)
                # # stamp.wcs = local_wcs
                # # stamp.setOrigin(origin_order_x, origin_order_y)

                # specImg.wcs = local_wcs
                # specImg.setOrigin(origin_order_x, origin_order_y)
Zhang Xin's avatar
pep8    
Zhang Xin committed
327

328
                # print('DEBUG: BEGIN -----------',bandNo,k)
Zhang Xin's avatar
pep8    
Zhang Xin committed
329

330
                img_s = v[0]
Zhang Xin's avatar
pep8    
Zhang Xin committed
331

332
333
334
335
336
337
338
339
340
341
342
343
                nan_ids = np.isnan(img_s)
                if img_s[nan_ids].shape[0] > 0:
                    img_s[nan_ids] = 0
                    print("DEBUG: specImg nan num is", img_s[nan_ids].shape[0])
                #########################################################
                origin_order_x = v[1]
                origin_order_y = v[2]
                specImg = galsim.ImageF(img_s)

                specImg.wcs = local_wcs
                specImg.setOrigin(origin_order_x, origin_order_y)
                try:
Zhang Xin's avatar
pep8    
Zhang Xin committed
344
345
                    specImg = psf_model.get_PSF_AND_convolve_withsubImg(
                        chip, cutImg=specImg, pos_img_local=pos_img_local, bandNo=bandNo, g_order=k, grating_split_pos=grating_split_pos)
346
                except:
Zhang Xin's avatar
pep8    
Zhang Xin committed
347
348
                    psf, pos_shear = psf_model.get_PSF(
                        chip=chip, pos_img=pos_img)
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373

                    psf_img = psf.drawImage(nx=100, ny=100, wcs=local_wcs)

                    psf_img_m = psf_img.array

                    img_s, orig_off = convolveImg(img_s, psf_img_m)
                    origin_order_x = v[1] - orig_off[0]
                    origin_order_y = v[2] - orig_off[1]

                    specImg = galsim.ImageF(img_s)

                    specImg.wcs = local_wcs
                    specImg.setOrigin(origin_order_x, origin_order_y)

                bounds = specImg.bounds & galsim.BoundsI(
                    0, chip.npix_x - 1, 0, chip.npix_y - 1)
                if bounds.area() == 0:
                    continue
                chip.img.setOrigin(0, 0)
                chip.img[bounds] = chip.img[bounds] + specImg[bounds]
                # stamp[bounds] = chip.img[bounds]
                # # chip.sensor.accumulate(photons, stamp)
                # chip.img[bounds] = stamp[bounds]
                chip.img.setOrigin(chip.bound.xmin, chip.bound.ymin)
                # del stamp
Fang Yuedong's avatar
Fang Yuedong committed
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
        del spec_orders
        return pos_shear

    def drawObj_slitless(self, tel, pos_img, psf_model, bandpass_list, filt, chip, nphotons_tot=None, g1=0, g2=0,
                         exptime=150., normFilter=None, grating_split_pos=3685, fd_shear=None):
        if normFilter is not None:
            norm_thr_rang_ids = normFilter['SENSITIVITY'] > 0.001
            sedNormFactor = getNormFactorForSpecWithABMAG(ABMag=self.param['mag_use_normal'], spectrum=self.sed,
                                                          norm_thr=normFilter,
                                                          sWave=np.floor(
                                                              normFilter[norm_thr_rang_ids][0][0]),
                                                          eWave=np.ceil(normFilter[norm_thr_rang_ids][-1][0]))
            if sedNormFactor == 0:
                return 2, None
        else:
            sedNormFactor = 1.

        if self.getMagFilter(filt) <= 15:
392
            folding_threshold = 5.e-8
Fang Yuedong's avatar
Fang Yuedong committed
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
        else:
            folding_threshold = 5.e-3
        gsp = galsim.GSParams(folding_threshold=folding_threshold)

        normalSED = Table(np.array([self.sed['WAVELENGTH'], self.sed['FLUX'] * sedNormFactor]).T,
                          names=('WAVELENGTH', 'FLUX'))

        self.real_pos = self.getRealPos(chip.img, global_x=self.posImg.x, global_y=self.posImg.y,
                                        img_real_wcs=self.chip_wcs)

        x, y = self.real_pos.x + 0.5, self.real_pos.y + 0.5
        x_nominal = int(np.floor(x + 0.5))
        y_nominal = int(np.floor(y + 0.5))
        dx = x - x_nominal
        dy = y - y_nominal
        offset = galsim.PositionD(dx, dy)

        chip_wcs_local = self.chip_wcs.local(self.real_pos)

        flat_cube = chip.flat_cube

        xOrderSigPlus = {'A': 1.3909419820029296, 'B': 1.4760376591236062, 'C': 4.035447379743442,
                         'D': 5.5684364343742825, 'E': 16.260021029735388}
        grating_split_pos_chip = 0 + grating_split_pos

        branges = np.zeros([len(bandpass_list), 2])

        if hasattr(psf_model, 'bandranges'):
            if psf_model.bandranges is None:
                return 2, None
            if len(psf_model.bandranges) != len(bandpass_list):
                return 2, None
            branges = psf_model.bandranges
        else:
            for i in range(len(bandpass_list)):
                branges[i, 0] = bandpass_list[i].blue_limit * 10
                branges[i, 1] = bandpass_list[i].red_limit * 10

        for i in range(len(bandpass_list)):
            # bandpass = bandpass_list[i]
            brange = branges[i]

            # psf, pos_shear = psf_model.get_PSF(chip=chip, pos_img=pos_img, bandpass=bandpass,
            #                                    folding_threshold=folding_threshold)

438
439
440
            # star = galsim.DeltaFunction(gsparams=gsp)
            # star = star.withFlux(tel.pupil_area * exptime)

Zhang Xin's avatar
pep8    
Zhang Xin committed
441
            # psf list :["A","B","C","D","E"]
442
443
            starImg_List = []
            try:
Zhang Xin's avatar
pep8    
Zhang Xin committed
444
                pos_img_local = [0, 0]
445
446
447
448
449
450
                x_start = chip.x_cen/chip.pix_size - chip.npix_x / 2.
                y_start = chip.y_cen/chip.pix_size - chip.npix_y / 2.
                pos_img_local[0] = pos_img.x - x_start
                pos_img_local[1] = pos_img.y - y_start
                nnx = 0
                nny = 0
451
                for order in ["A", "B"]:
452
453
454
455
456
                    EXTRA = False
                    if self.getMagFilter(filt) <= filt.mag_saturation-2.:
                        EXTRA = True
                        nnx = 2048
                        nny = 2048
457
                    psf, pos_shear = psf_model.get_PSF(
458
                        chip, pos_img_local=pos_img_local, bandNo=i+1, galsimGSObject=True, g_order=order, grating_split_pos=grating_split_pos, extrapolate=EXTRA, ngg=3072)
459
                    # star_p = galsim.Convolve(psf, star)
Zhang Xin's avatar
pep8    
Zhang Xin committed
460
                    star_p = psf.withFlux(tel.pupil_area * exptime)
461
                    if nnx == 0:
Zhang Xin's avatar
pep8    
Zhang Xin committed
462
                        starImg = star_p.drawImage(
463
                            wcs=chip_wcs_local, offset=offset, method='no_pixel')
464
465
466
                        nnx = starImg.xmax - starImg.xmin + 1
                        nny = starImg.ymax - starImg.ymin + 1
                    else:
Zhang Xin's avatar
pep8    
Zhang Xin committed
467
                        starImg = star_p.drawImage(
468
                            nx=nnx, ny=nny, wcs=chip_wcs_local, offset=offset, method='no_pixel')
469
470
471
472
473
474
                    # n1 = np.sum(np.isinf(starImg.array))
                    # n2 = np.sum(np.isnan(starImg.array))
                    # if n1>0 or n2 > 0:
                    #     print("DEBUG: MockObject, inf:%d, nan:%d"%(n1, n2))
                    starImg.setOrigin(0, 0)
                    starImg_List.append(starImg)
Zhang Xin's avatar
pep8    
Zhang Xin committed
475
                for order in ["C", "D", "E"]:
476
477
478
479
                    starImg_List.append(starImg)
            except:
                psf, pos_shear = psf_model.get_PSF(chip=chip, pos_img=pos_img)
                # star_p = galsim.Convolve(psf, star)
Zhang Xin's avatar
pep8    
Zhang Xin committed
480
                star_p = psf.withFlux(tel.pupil_area * exptime)
481
                starImg = star_p.drawImage(wcs=chip_wcs_local, offset=offset, method='no_pixel')
482
                starImg.setOrigin(0, 0)
Zhang Xin's avatar
pep8    
Zhang Xin committed
483
                for order in ["A", "B", "C", "D", "E"]:
484
485
486
487
488
489
490
                    starImg_List.append(starImg)

            # psf_tmp = galsim.Gaussian(sigma=0.002)
            # star = galsim.Convolve(psf_tmp, star)

            # starImg = star.drawImage(
            #     nx=60, ny=60, wcs=chip_wcs_local, offset=offset)
Fang Yuedong's avatar
Fang Yuedong committed
491
492
493

            origin_star = [y_nominal - (starImg.center.y - starImg.ymin),
                           x_nominal - (starImg.center.x - starImg.xmin)]
Zhang Xin's avatar
pep8    
Zhang Xin committed
494

Fang Yuedong's avatar
Fang Yuedong committed
495
496
497
498
            gal_origin = [origin_star[0], origin_star[1]]
            gal_end = [origin_star[0] + starImg.array.shape[0] -
                       1, origin_star[1] + starImg.array.shape[1] - 1]
            if gal_origin[1] < grating_split_pos_chip < gal_end[1]:
499
                subSlitPos = int(grating_split_pos_chip - gal_origin[1])
Fang Yuedong's avatar
Fang Yuedong committed
500
                # part img disperse
Zhang Xin's avatar
pep8    
Zhang Xin committed
501
                star_p1s = []
502
                for starImg in starImg_List:
Fang Yuedong's avatar
Fang Yuedong committed
503

504
505
506
507
                    subImg_p1 = starImg.array[:, 0:subSlitPos]
                    star_p1 = galsim.Image(subImg_p1)
                    star_p1.setOrigin(0, 0)
                    star_p1s.append(star_p1)
Fang Yuedong's avatar
Fang Yuedong committed
508
509
510
511
                origin_p1 = origin_star
                xcenter_p1 = min(x_nominal, grating_split_pos_chip - 1) - 0
                ycenter_p1 = y_nominal - 0

512
                sdp_p1 = SpecDisperser(orig_img=star_p1s, xcenter=xcenter_p1,
Fang Yuedong's avatar
Fang Yuedong committed
513
514
515
516
517
518
519
                                       ycenter=ycenter_p1, origin=origin_p1,
                                       tar_spec=normalSED,
                                       band_start=brange[0], band_end=brange[1],
                                       conf=chip.sls_conf[0],
                                       isAlongY=0,
                                       flat_cube=flat_cube)

Zhang Xin's avatar
pep8    
Zhang Xin committed
520
521
                self.addSLStoChipImage(
                    sdp=sdp_p1, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
522
523
524
525
                # pos_shear = self.addSLStoChipImageWithPSF(sdp=sdp_p1, chip=chip, pos_img_local=[xcenter_p1, ycenter_p1],
                #                                           psf_model=psf_model, bandNo=i+1, grating_split_pos=grating_split_pos,
                #                                           local_wcs=chip_wcs_local, pos_img=pos_img)

Zhang Xin's avatar
pep8    
Zhang Xin committed
526
                star_p2s = []
527
                for starImg in starImg_List:
Fang Yuedong's avatar
Fang Yuedong committed
528

529
                    subImg_p2 = starImg.array[:,
Zhang Xin's avatar
pep8    
Zhang Xin committed
530
                                              subSlitPos:starImg.array.shape[1]]
531
532
533
                    star_p2 = galsim.Image(subImg_p2)
                    star_p2.setOrigin(0, 0)
                    star_p2s.append(star_p2)
Fang Yuedong's avatar
Fang Yuedong committed
534
                origin_p2 = [origin_star[0], grating_split_pos_chip]
535
                xcenter_p2 = max(x_nominal, grating_split_pos_chip) - 0
Fang Yuedong's avatar
Fang Yuedong committed
536
537
                ycenter_p2 = y_nominal - 0

538
                sdp_p2 = SpecDisperser(orig_img=star_p2s, xcenter=xcenter_p2,
Fang Yuedong's avatar
Fang Yuedong committed
539
540
541
542
543
544
545
                                       ycenter=ycenter_p2, origin=origin_p2,
                                       tar_spec=normalSED,
                                       band_start=brange[0], band_end=brange[1],
                                       conf=chip.sls_conf[1],
                                       isAlongY=0,
                                       flat_cube=flat_cube)

Zhang Xin's avatar
pep8    
Zhang Xin committed
546
547
                self.addSLStoChipImage(
                    sdp=sdp_p2, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
548
549
550
                # pos_shear = self.addSLStoChipImageWithPSF(sdp=sdp_p2, chip=chip, pos_img_local=[xcenter_p2, ycenter_p2],
                #                                           psf_model=psf_model, bandNo=i + 1, grating_split_pos=grating_split_pos,
                #                                           local_wcs=chip_wcs_local, pos_img=pos_img)
Fang Yuedong's avatar
Fang Yuedong committed
551
552
553
554

                del sdp_p1
                del sdp_p2
            elif grating_split_pos_chip <= gal_origin[1]:
555
                sdp = SpecDisperser(orig_img=starImg_List, xcenter=x_nominal - 0,
Fang Yuedong's avatar
Fang Yuedong committed
556
557
558
559
560
561
                                    ycenter=y_nominal - 0, origin=origin_star,
                                    tar_spec=normalSED,
                                    band_start=brange[0], band_end=brange[1],
                                    conf=chip.sls_conf[1],
                                    isAlongY=0,
                                    flat_cube=flat_cube)
Zhang Xin's avatar
pep8    
Zhang Xin committed
562
563
                self.addSLStoChipImage(
                    sdp=sdp, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
564
565
566
                # pos_shear = self.addSLStoChipImageWithPSF(sdp=sdp, chip=chip, pos_img_local=[x_nominal, y_nominal],
                #                                           psf_model=psf_model, bandNo=i + 1, grating_split_pos=grating_split_pos,
                #                                           local_wcs=chip_wcs_local, pos_img=pos_img)
Fang Yuedong's avatar
Fang Yuedong committed
567
568
                del sdp
            elif grating_split_pos_chip >= gal_end[1]:
569
                sdp = SpecDisperser(orig_img=starImg_List, xcenter=x_nominal - 0,
Fang Yuedong's avatar
Fang Yuedong committed
570
571
572
573
574
575
                                    ycenter=y_nominal - 0, origin=origin_star,
                                    tar_spec=normalSED,
                                    band_start=brange[0], band_end=brange[1],
                                    conf=chip.sls_conf[0],
                                    isAlongY=0,
                                    flat_cube=flat_cube)
Zhang Xin's avatar
pep8    
Zhang Xin committed
576
577
                self.addSLStoChipImage(
                    sdp=sdp, chip=chip, xOrderSigPlus=xOrderSigPlus, local_wcs=chip_wcs_local)
578
579
580
                # pos_shear = self.addSLStoChipImageWithPSF(sdp=sdp, chip=chip, pos_img_local=[x_nominal, y_nominal],
                #                                           psf_model=psf_model, bandNo=i + 1, grating_split_pos=grating_split_pos,
                #                                           local_wcs=chip_wcs_local, pos_img=pos_img)
Fang Yuedong's avatar
Fang Yuedong committed
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
                del sdp
            # del psf
        return 1, pos_shear

    def SNRestimate(self, img_obj, flux, noise_level=0.0, seed=31415):
        img_flux = img_obj.added_flux
        stamp = img_obj.copy() * 0.0
        rng = galsim.BaseDeviate(seed)
        gaussianNoise = galsim.GaussianNoise(rng, sigma=noise_level)
        stamp.addNoise(gaussianNoise)
        sig_obj = np.std(stamp.array)
        snr_obj = img_flux / sig_obj
        return snr_obj

    def drawObj_PSF(self, tel, pos_img, psf_model, bandpass_list, filt, chip, nphotons_tot=None, g1=0, g2=0,
                    exptime=150., fd_shear=None, chip_output=None):
Zhang Xin's avatar
pep8    
Zhang Xin committed
597
        if nphotons_tot is None:
Fang Yuedong's avatar
Fang Yuedong committed
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
            nphotons_tot = self.getElectronFluxFilt(filt, tel, exptime)
        # print("nphotons_tot = ", nphotons_tot)

        try:
            full = integrate_sed_bandpass(
                sed=self.sed, bandpass=filt.bandpass_full)
        except Exception as e:
            print(e)
            if self.logger:
                self.logger.error(e)
            return 2, None

        # Set Galsim Parameters
        if self.getMagFilter(filt) <= 15:
            folding_threshold = 5.e-4
        else:
            folding_threshold = 5.e-3
        gsp = galsim.GSParams(folding_threshold=folding_threshold)

        # Get real image position of object (deal with chip rotation w.r.t its center)
        self.real_pos = self.getRealPos(chip.img, global_x=self.posImg.x, global_y=self.posImg.y,
                                        img_real_wcs=self.chip_wcs)
        x, y = self.real_pos.x + 0.5, self.real_pos.y + 0.5
        x_nominal = int(np.floor(x + 0.5))
        y_nominal = int(np.floor(y + 0.5))
        dx = x - x_nominal
        dy = y - y_nominal
        offset = galsim.PositionD(dx, dy)
        # Get real local wcs of object (deal with chip rotation w.r.t its center)
        chip_wcs_local = self.chip_wcs.local(self.real_pos)
        is_updated = 0

        # Loop over all sub-bandpasses
        for i in range(len(bandpass_list)):
            bandpass = bandpass_list[i]
            try:
                sub = integrate_sed_bandpass(sed=self.sed, bandpass=bandpass)
            except Exception as e:
                print(e)
                if self.logger:
                    self.logger.error(e)
                continue
            ratio = sub / full
            if not (ratio == -1 or (ratio != ratio)):
                nphotons = ratio * nphotons_tot
            else:
                continue

            # Get PSF model
            psf, pos_shear = psf_model.get_PSF(chip=chip, pos_img=pos_img, bandpass=bandpass,
                                               folding_threshold=folding_threshold)
            star_temp = psf.withFlux(nphotons)

            if i == 0:
                star = star_temp
            else:
                star = star+star_temp

        pixelScale = 0.074
        stamp = star.drawImage(wcs=chip_wcs_local, offset=offset)
        # stamp = star.drawImage(nx=256, ny=256, scale=pixelScale)
        if np.sum(np.isnan(stamp.array)) > 0:
            return None

        fn = chip_output.subdir + "/psfIDW"
        os.makedirs(fn, exist_ok=True)
        fn = fn + "/ccd_{:}".format(chip.chipID) + \
            "_psf_"+str(self.param['id'])+".fits"
Zhang Xin's avatar
pep8    
Zhang Xin committed
666
        if fn is not None:
Fang Yuedong's avatar
Fang Yuedong committed
667
668
669
670
671
672
673
674
675
676
677
            if os.path.exists(fn):
                os.remove(fn)
        hdu = fitsio.PrimaryHDU()
        hdu.data = stamp.array
        hdu.header.set('name',      self.type)
        hdu.header.set('pixScale',  pixelScale)
        hdu.header.set('objID',     self.param['id'])
        hdu.writeto(fn)

        del stamp
        return None