profit.c 134 KB
Newer Older
1
2
/*
*				profit.c
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3
*
4
* Fit a range of galaxy models to an image.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
5
*
6
*%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Emmanuel Bertin's avatar
Emmanuel Bertin committed
7
*
8
*	This file part of:	SExtractor
Emmanuel Bertin's avatar
Emmanuel Bertin committed
9
*
10
*	Copyright:		(C) 2006-2011 Emmanuel Bertin -- IAP/CNRS/UPMC
11
12
13
14
15
16
17
18
19
20
21
22
23
24
*
*	License:		GNU General Public License
*
*	SExtractor is free software: you can redistribute it and/or modify
*	it under the terms of the GNU General Public License as published by
*	the Free Software Foundation, either version 3 of the License, or
*	(at your option) any later version.
*	SExtractor is distributed in the hope that it will be useful,
*	but WITHOUT ANY WARRANTY; without even the implied warranty of
*	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
*	GNU General Public License for more details.
*	You should have received a copy of the GNU General Public License
*	along with SExtractor. If not, see <http://www.gnu.org/licenses/>.
*
25
*	Last modified:		06/09/2011
26
27
*
*%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*/
Emmanuel Bertin's avatar
Emmanuel Bertin committed
28
29
30
31
32

#ifdef HAVE_CONFIG_H
#include        "config.h"
#endif

33
34
35
36
#ifndef HAVE_MATHIMF_H
#define _GNU_SOURCE
#endif

37
#include	<math.h>
Emmanuel Bertin's avatar
Emmanuel Bertin committed
38
39
40
41
42
43
44
45
#include	<stdio.h>
#include	<stdlib.h>
#include	<string.h>

#include	"define.h"
#include	"globals.h"
#include	"prefs.h"
#include	"fits/fitscat.h"
46
#include	"levmar/levmar.h"
Emmanuel Bertin's avatar
Emmanuel Bertin committed
47
48
49
#include	"fft.h"
#include	"fitswcs.h"
#include	"check.h"
50
#include	"image.h"
Emmanuel Bertin's avatar
Emmanuel Bertin committed
51
52
53
54
#include	"pattern.h"
#include	"psf.h"
#include	"profit.h"

55
56
static double	prof_gammainc(double x, double a),
		prof_gamma(double x);
57
58
static float	prof_interpolate(profstruct *prof, float *posin);
static float	interpolate_pix(float *posin, float *pix, int *naxisn,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
59
60
		interpenum interptype);

61
static void	make_kernel(float pos, float *kernel, interpenum interptype);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
62
63
64

/*------------------------------- variables ---------------------------------*/

Emmanuel Bertin's avatar
Emmanuel Bertin committed
65
66
const int	interp_kernwidth[5]={1,2,4,6,8};

67
68
const int	flux_flag[PARAM_NPARAM] = {0,
					1,0,0,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
69
70
71
72
73
74
75
76
					1,0,0,0,0,
					1,0,0,0,
					1,0,0,0,0,0,0,0,
					1,0,0,
					1,0,0,
					1,0,0
					};

Emmanuel Bertin's avatar
Emmanuel Bertin committed
77
/* "Local" global variables for debugging purposes */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
78
79
int theniter, the_gal;
static picstruct	*the_field, *the_wfield;
80
profitstruct		*theprofit, *thepprofit, *theqprofit;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
81
82

/****** profit_init ***********************************************************
83
PROTO	profitstruct profit_init(psfstruct *psf, unsigned int modeltype)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
84
PURPOSE	Allocate and initialize a new profile-fitting structure.
85
86
INPUT	Pointer to PSF structure,
	Model type.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
87
88
89
OUTPUT	A pointer to an allocated profit structure.
NOTES	-.
AUTHOR	E. Bertin (IAP)
90
VERSION	22/04/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
91
 ***/
92
profitstruct	*profit_init(psfstruct *psf, unsigned int modeltype)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
93
94
  {
   profitstruct		*profit;
95
   int			t, nmodels;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
96
97
98

  QCALLOC(profit, profitstruct, 1);
  profit->psf = psf;
99
100
101
102
103
  QMALLOC(profit->prof, profstruct *, MODEL_NMAX);
  nmodels = 0;
  for (t=1; t<(1<<MODEL_NMAX); t<<=1)
    if (modeltype&t)
      profit->prof[nmodels++] = prof_init(profit, t);
104
105
106
107
108
109
110
111
112
113
/* Allocate memory for the complete model */
  QMALLOC16(profit->modpix, float, PROFIT_MAXMODSIZE*PROFIT_MAXMODSIZE);
  QMALLOC16(profit->modpix2, float, PROFIT_MAXMODSIZE*PROFIT_MAXMODSIZE);
  QMALLOC16(profit->cmodpix, float, PROFIT_MAXMODSIZE*PROFIT_MAXMODSIZE);
  QMALLOC16(profit->psfpix, float, PROFIT_MAXMODSIZE*PROFIT_MAXMODSIZE);
  QMALLOC16(profit->objpix, PIXTYPE, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
  QMALLOC16(profit->objweight, PIXTYPE, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
  QMALLOC16(profit->lmodpix, PIXTYPE, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
  QMALLOC16(profit->lmodpix2, PIXTYPE, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
  QMALLOC16(profit->resi, float, PROFIT_MAXOBJSIZE*PROFIT_MAXOBJSIZE);
114
  QMALLOC16(profit->covar, float, profit->nparam*profit->nparam);
115
  profit->nprof = nmodels;
116
  profit->fluxfac = 1.0;	/* Default */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
117
118
119
120
121
122
123
124
125
126
127
128

  return profit;
  }  


/****** profit_end ************************************************************
PROTO	void prof_end(profstruct *prof)
PURPOSE	End (deallocate) a profile-fitting structure.
INPUT	Prof structure.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
129
VERSION	06/04/2010
Emmanuel Bertin's avatar
Emmanuel Bertin committed
130
131
132
133
134
135
136
 ***/
void	profit_end(profitstruct *profit)
  {
   int	p;

  for (p=0; p<profit->nprof; p++)
    prof_end(profit->prof[p]);
137
138
139
140
141
142
143
144
145
  free(profit->modpix);
  free(profit->modpix2);
  free(profit->cmodpix);
  free(profit->psfpix);
  free(profit->lmodpix);
  free(profit->lmodpix2);
  free(profit->objpix);
  free(profit->objweight);
  free(profit->resi);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
  free(profit->prof);
  free(profit->covar);
  free(profit->psfdft);
  free(profit);

  return;
  }


/****** profit_fit ************************************************************
PROTO	void profit_fit(profitstruct *profit, picstruct *field,
		picstruct *wfield, objstruct *obj, obj2struct *obj2)
PURPOSE	Fit profile(s) convolved with the PSF to a detected object.
INPUT	Array of profile structures,
	Number of profiles,
	Pointer to the profile-fitting structure,
	Pointer to the field,
	Pointer to the field weight,
	Pointer to the obj.
OUTPUT	Pointer to an allocated fit structure (containing details about the
	fit).
NOTES	It is a modified version of the lm_minimize() of lmfit.
AUTHOR	E. Bertin (IAP)
169
VERSION	06/09/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
170
171
172
173
174
 ***/
void	profit_fit(profitstruct *profit,
		picstruct *field, picstruct *wfield,
		objstruct *obj, obj2struct *obj2)
  {
175
    profitstruct	*pprofit, *qprofit;
176
    patternstruct	*pattern;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
177
178
    psfstruct		*psf;
    checkstruct		*check;
179
180
181
    double		emx2,emy2,emxy, a , cp,sp, cn, bn, n,
			sump,sumq, sumpw2,sumqw2,sumpqw, sump0,sumq0;
    PIXTYPE		valp,valq,sig2;
182
183
184
    float		param0[PARAM_NPARAM], param1[PARAM_NPARAM],
			param[PARAM_NPARAM],
			**list,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
185
			*cov,
186
			psf_fwhm, dchi2, err, aspect, chi2;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
187
188
    int			*index,
			i,j,p, nparam, nparam2, ncomp, nprof;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
189
190

  nparam = profit->nparam;
191
  nparam2 = nparam*nparam;
192
  nprof = profit->nprof;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
193
194
195
196
197
198
199
  if (profit->psfdft)
    {
    QFREE(profit->psfdft);
    }

  psf = profit->psf;
  profit->pixstep = psf->pixstep;
200
  obj2->prof_flag = 0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
201
202

/* Create pixmaps at image resolution */
203
204
  profit->ix = (int)(obj->mx + 0.49999);/* internal convention: 1st pix = 0 */
  profit->iy = (int)(obj->my + 0.49999);/* internal convention: 1st pix = 0 */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
205
  psf_fwhm = psf->masksize[0]*psf->pixstep;
206
  profit->objnaxisn[0] = (((int)((obj->xmax-obj->xmin+1) + psf_fwhm + 0.499)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
207
		*1.2)/2)*2 + 1;
208
  profit->objnaxisn[1] = (((int)((obj->ymax-obj->ymin+1) + psf_fwhm + 0.499)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
209
210
211
212
213
		*1.2)/2)*2 + 1;
  if (profit->objnaxisn[1]<profit->objnaxisn[0])
    profit->objnaxisn[1] = profit->objnaxisn[0];
  else
    profit->objnaxisn[0] = profit->objnaxisn[1];
214
215
  if (profit->objnaxisn[0]>PROFIT_MAXOBJSIZE)
    {
216
217
    profit->subsamp = ceil((float)profit->objnaxisn[0]/PROFIT_MAXOBJSIZE);
    profit->objnaxisn[1] = (profit->objnaxisn[0] /= (int)profit->subsamp);
218
219
220
    obj2->prof_flag |= PROFLAG_OBJSUB;
    }
  else
221
    profit->subsamp = 1.0;
222
  profit->nobjpix = profit->objnaxisn[0]*profit->objnaxisn[1];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
223
224
225
226
227
228
229
230
231

/* Use (dirty) global variables to interface with lmfit */
  the_field = field;
  the_wfield = wfield;
  theprofit = profit;
  profit->obj = obj;
  profit->obj2 = obj2;

  profit->nresi = profit_copyobjpix(profit, field, wfield);
232
/* Check if the number of constraints exceeds the number of free parameters */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
233
234
  if (profit->nresi < nparam)
    {
235
236
237
    if (FLAG(obj2.prof_vector))
      for (p=0; p<nparam; p++)
        obj2->prof_vector[p] = 0.0;
238
239
240
241
242
243
    if (FLAG(obj2.prof_errvector))
      for (p=0; p<nparam; p++)
        obj2->prof_errvector[p] = 0.0;
    if (FLAG(obj2.prof_errmatrix))
      for (p=0; p<nparam2; p++)
        obj2->prof_errmatrix[p] = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
244
    obj2->prof_niter = 0;
245
    obj2->prof_flag |= PROFLAG_NOTCONST;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
246
247
248
249
250
    return;
    }

/* Create pixmap at PSF resolution */
  profit->modnaxisn[0] =
251
252
	((int)(profit->objnaxisn[0]*profit->subsamp/profit->pixstep
		+0.4999)/2+1)*2; 
Emmanuel Bertin's avatar
Emmanuel Bertin committed
253
  profit->modnaxisn[1] =
254
255
	((int)(profit->objnaxisn[1]*profit->subsamp/profit->pixstep
		+0.4999)/2+1)*2; 
Emmanuel Bertin's avatar
Emmanuel Bertin committed
256
257
258
259
  if (profit->modnaxisn[1] < profit->modnaxisn[0])
    profit->modnaxisn[1] = profit->modnaxisn[0];
  else
    profit->modnaxisn[0] = profit->modnaxisn[1];
260
261
262
263
264
265
  if (profit->modnaxisn[0]>PROFIT_MAXMODSIZE)
    {
    profit->pixstep = (double)profit->modnaxisn[0] / PROFIT_MAXMODSIZE;
    profit->modnaxisn[0] = profit->modnaxisn[1] = PROFIT_MAXMODSIZE;
    obj2->prof_flag |= PROFLAG_MODSUB;
    }
266
  profit->nmodpix = profit->modnaxisn[0]*profit->modnaxisn[1];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
267
268
269
270
271
272

/* Compute the local PSF */
  profit_psf(profit);

/* Set initial guesses and boundaries */
  profit->sigma = obj->sigbkg;
273
274
275
276
277
278
279
280
  if ((profit->guessradius = 0.5*psf->fwhm) < obj2->hl_radius)
    profit->guessradius = obj2->hl_radius;
  if ((profit->guessflux = obj2->flux_auto) <= 0.0)
    profit->guessflux = 0.0;
  if ((profit->guessfluxmax = 10.0*obj2->fluxerr_auto) <= profit->guessflux)
    profit->guessfluxmax = profit->guessflux;
  if (profit->guessfluxmax <= 0.0)
    profit->guessfluxmax = 1.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
281
282
283
284

  profit_resetparams(profit);

/* Actual minimisation */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
285
  fft_reset();
286
the_gal++;
287

Emmanuel Bertin's avatar
Emmanuel Bertin committed
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
/*
char str[1024];
sprintf(str, "obj_%04d.fits", the_gal);
catstruct *bcat;
float *bpix, *opix,*lmodpix,*objpix;
bcat=read_cat("base.fits");
QMALLOC(bpix, float, field->npix);
QFSEEK(bcat->file, bcat->tab->bodypos, SEEK_SET, bcat->filename);
read_body(bcat->tab, bpix, field->npix); 
free_cat(&bcat,1);
bcat=read_cat(str);
QMALLOC(opix, float, profit->nobjpix);
QFSEEK(bcat->file, bcat->tab->bodypos, SEEK_SET, bcat->filename);
read_body(bcat->tab, opix, profit->nobjpix); 
free_cat(&bcat,1);
addfrombig(bpix, field->width, field->height,
		profit->objpix, profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, -1.0);
objpix = profit->objpix;
lmodpix = opix;
for (i=profit->nobjpix; i--;)
*(objpix++) += *(lmodpix++);
free(bpix);
free(opix);
*/
Emmanuel Bertin's avatar
Emmanuel Bertin committed
313
  profit->niter = profit_minimize(profit, PROFIT_MAXITER);
314
/*
Emmanuel Bertin's avatar
Emmanuel Bertin committed
315
316
317
318
319
320
321
322
323
profit_residuals(profit,field,wfield, 0.0, profit->paraminit, NULL);
check=initcheck(str, CHECK_OTHER,1);
check->width = profit->objnaxisn[0];
check->height = profit->objnaxisn[1];
reinitcheck(field,check);
memcpy(check->pix, profit->lmodpix, profit->nobjpix*sizeof(float));
reendcheck(field,check);
endcheck(check);

324
325
326
327
328
329
330
  chi2 = profit->chi2;
  for (p=0; p<nparam; p++)
    param1[p] = profit->paraminit[p];
  profit_resetparams(profit);
  for (p=0; p<nparam; p++)
    profit->paraminit[p] = param1[p] + (profit->paraminit[p]<param1[p]?1.0:-1.0)
			* sqrt(profit->covar[p*(nparam+1)]);
331

332
333
334
335
336
337
338
339
340
341
342
343
  profit->niter = profit_minimize(profit, PROFIT_MAXITER);
  if (chi2<profit->chi2)
    for (p=0; p<nparam; p++)
      profit->paraminit[p] = param1[p];

list = profit->paramlist;
index = profit->paramindex;
for (i=0; i<PARAM_NPARAM; i++)
if (list[i] && i!= PARAM_SPHEROID_ASPECT && i!=PARAM_SPHEROID_POSANG)
profit->freeparam_flag[index[i]] = 0;
profit->niter = profit_minimize(profit, PROFIT_MAXITER);
*/
344
345
346
347
348
  if (profit->nlimmin)
    obj2->prof_flag |= PROFLAG_MINLIM;
  if (profit->nlimmax)
    obj2->prof_flag |= PROFLAG_MAXLIM;

Emmanuel Bertin's avatar
Emmanuel Bertin committed
349
350
351
352
  for (p=0; p<nparam; p++)
    profit->paramerr[p]= sqrt(profit->covar[p*(nparam+1)]);

/* CHECK-Images */
353
354
355
356
357
358
  if ((check = prefs.check[CHECK_PROFILES]))
    {
    profit_residuals(profit,field,wfield, 0.0, profit->paraminit, NULL);
    addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, 1.0);
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
359

Emmanuel Bertin's avatar
Emmanuel Bertin committed
360
361
  if ((check = prefs.check[CHECK_SUBPROFILES]))
    {
362
    profit_residuals(profit,field,wfield, 0.0, profit->paraminit, NULL);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
363
364
365
    addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, -1.0);
    }
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
  if ((check = prefs.check[CHECK_SPHEROIDS]))
    {
/*-- Set to 0 flux components that do not belong to spheroids */
    for (p=0; p<profit->nparam; p++)
      param[p] = profit->paraminit[p];
    list = profit->paramlist;
    index = profit->paramindex;
    for (i=0; i<PARAM_NPARAM; i++)
      if (list[i] && flux_flag[i] && i!= PARAM_SPHEROID_FLUX)
        param[index[i]] = 0.0;
    profit_residuals(profit,field,wfield, 0.0, param, NULL);
    addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, 1.0);
    }
  if ((check = prefs.check[CHECK_SUBSPHEROIDS]))
    {
/*-- Set to 0 flux components that do not belong to spheroids */
    for (p=0; p<profit->nparam; p++)
      param[p] = profit->paraminit[p];
    list = profit->paramlist;
    index = profit->paramindex;
    for (i=0; i<PARAM_NPARAM; i++)
      if (list[i] && flux_flag[i] && i!= PARAM_SPHEROID_FLUX)
        param[index[i]] = 0.0;
    profit_residuals(profit,field,wfield, 0.0, param, NULL);
    addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, -1.0);
    }
  if ((check = prefs.check[CHECK_DISKS]))
Emmanuel Bertin's avatar
Emmanuel Bertin committed
395
    {
396
397
398
399
400
401
402
403
404
/*-- Set to 0 flux components that do not belong to disks */
    for (p=0; p<profit->nparam; p++)
      param[p] = profit->paraminit[p];
    list = profit->paramlist;
    index = profit->paramindex;
    for (i=0; i<PARAM_NPARAM; i++)
      if (list[i] && flux_flag[i] && i!= PARAM_DISK_FLUX)
        param[index[i]] = 0.0;
    profit_residuals(profit,field,wfield, 0.0, param, NULL);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
405
406
407
    addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, 1.0);
    }
408
409
410
411
412
413
414
415
416
417
418
419
420
421
  if ((check = prefs.check[CHECK_SUBDISKS]))
    {
/*-- Set to 0 flux components that do not belong to disks */
    for (p=0; p<profit->nparam; p++)
      param[p] = profit->paraminit[p];
    list = profit->paramlist;
    index = profit->paramindex;
    for (i=0; i<PARAM_NPARAM; i++)
      if (list[i] && flux_flag[i] && i!= PARAM_DISK_FLUX)
        param[index[i]] = 0.0;
    profit_residuals(profit,field,wfield, 0.0, param, NULL);
    addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, -1.0);
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
422
 
423
424
/* Compute compressed residuals */
  profit_residuals(profit,field,wfield, 10.0, profit->paraminit,profit->resi);
425

Emmanuel Bertin's avatar
Emmanuel Bertin committed
426
427
428
429
/* Fill measurement parameters */
  if (FLAG(obj2.prof_vector))
    {
    for (p=0; p<nparam; p++)
430
      obj2->prof_vector[p]= profit->paraminit[p];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
431
432
433
434
435
436
    }
  if (FLAG(obj2.prof_errvector))
    {
    for (p=0; p<nparam; p++)
      obj2->prof_errvector[p]= profit->paramerr[p];
    }
437
438
439
440
441
  if (FLAG(obj2.prof_errmatrix))
    {
    for (p=0; p<nparam2; p++)
      obj2->prof_errmatrix[p]= profit->covar[p];
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
442
443
444

  obj2->prof_niter = profit->niter;
  obj2->flux_prof = profit->flux;
445
446
447
  if (FLAG(obj2.fluxerr_prof))
    {
    err = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
448
449
450
451
452
453
454
455
456
457
458
    cov = profit->covar;
    index = profit->paramindex;
    list = profit->paramlist;
    for (i=0; i<PARAM_NPARAM; i++)
      if (flux_flag[i] && list[i])
        {
        cov = profit->covar + nparam*index[i];
        for (j=0; j<PARAM_NPARAM; j++)
          if (flux_flag[j] && list[j])
            err += cov[index[j]];
        }
459
460
461
    obj2->fluxerr_prof = err>0.0? sqrt(err): 0.0;
    }

462
463
464
  obj2->prof_chi2 = (profit->nresi > profit->nparam)?
		profit->chi2 / (profit->nresi - profit->nparam) : 0.0;

465
/* Position */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
466
467
468
469
470
  if (FLAG(obj2.x_prof))
    {
    i = profit->paramindex[PARAM_X];
    j = profit->paramindex[PARAM_Y];
/*-- Model coordinates follow the FITS convention (first pixel at 1,1) */
471
472
    if (profit->paramlist[PARAM_X])
      {
473
      obj2->x_prof = (double)profit->ix + *profit->paramlist[PARAM_X] + 1.0;
474
475
476
477
478
479
      obj2->poserrmx2_prof = emx2 = profit->covar[i*(nparam+1)];
      }
    else
      emx2 = 0.0;
    if (profit->paramlist[PARAM_Y])
      {
480
      obj2->y_prof = (double)profit->iy + *profit->paramlist[PARAM_Y] + 1.0;
481
482
483
484
485
486
487
488
      obj2->poserrmy2_prof = emy2 = profit->covar[j*(nparam+1)];
      }
    else
      emy2 = 0.0;
    if (profit->paramlist[PARAM_X] && profit->paramlist[PARAM_Y])
      obj2->poserrmxy_prof = emxy = profit->covar[i+j*nparam];
    else
      emxy = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506

/*-- Error ellipse parameters */
    if (FLAG(obj2.poserra_prof))
      {
       double	pmx2,pmy2,temp,theta;

      if (fabs(temp=emx2-emy2) > 0.0)
        theta = atan2(2.0 * emxy,temp) / 2.0;
      else
        theta = PI/4.0;

      temp = sqrt(0.25*temp*temp+ emxy*emxy);
      pmy2 = pmx2 = 0.5*(emx2+emy2);
      pmx2+=temp;
      pmy2-=temp;

      obj2->poserra_prof = (float)sqrt(pmx2);
      obj2->poserrb_prof = (float)sqrt(pmy2);
507
      obj2->poserrtheta_prof = (float)(theta/DEG);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
508
509
510
511
512
513
514
515
516
517
518
519
      }

    if (FLAG(obj2.poserrcxx_prof))
      {
       double	temp;

      obj2->poserrcxx_prof = (float)(emy2/(temp=emx2*emy2-emxy*emxy));
      obj2->poserrcyy_prof = (float)(emx2/temp);
      obj2->poserrcxy_prof = (float)(-2*emxy/temp);
      }
    }

520
521
522
523
524
525
526
527
528
529
530
531
532
/* Equivalent noise area */
  if (FLAG(obj2.prof_noisearea))
    obj2->prof_noisearea = profit_noisearea(profit);

/* Second order moments and ellipticities */
  if (FLAG(obj2.prof_mx2))
    profit_moments(profit, obj2);

/* Second order moments of the convolved model (used by other parameters) */
  if (FLAG(obj2.prof_convmx2))
    profit_convmoments(profit, obj2);

/* "Hybrid" magnitudes */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
533
534
535
536
537
538
  if (FLAG(obj2.fluxcor_prof))
    {
    profit_residuals(profit,field,wfield, 0.0, profit->paraminit, NULL);
    profit_fluxcor(profit, obj, obj2);
    }

539
/* Do measurements on the rasterised model (surface brightnesses) */
540
  if (FLAG(obj2.fluxeff_prof))
541
    profit_surface(profit, obj2); 
Emmanuel Bertin's avatar
Emmanuel Bertin committed
542

543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
/* Background offset */
  if (FLAG(obj2.prof_offset_flux))
    {
    obj2->prof_offset_flux = *profit->paramlist[PARAM_BACK];
    obj2->prof_offset_fluxerr=profit->paramerr[profit->paramindex[PARAM_BACK]];
    }

/* Point source */
  if (FLAG(obj2.prof_dirac_flux))
    {
    obj2->prof_dirac_flux = *profit->paramlist[PARAM_DIRAC_FLUX];
    obj2->prof_dirac_fluxerr =
		profit->paramerr[profit->paramindex[PARAM_DIRAC_FLUX]];
    }

558
/* Spheroid */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
559
560
  if (FLAG(obj2.prof_spheroid_flux))
    {
561
562
563
564
565
566
567
568
569
    if ((aspect = *profit->paramlist[PARAM_SPHEROID_ASPECT]) > 1.0)
      {
      *profit->paramlist[PARAM_SPHEROID_REFF] *= aspect;
      profit->paramerr[profit->paramindex[PARAM_SPHEROID_REFF]] *= aspect;
      profit->paramerr[profit->paramindex[PARAM_SPHEROID_ASPECT]]
			/= (aspect*aspect);
      *profit->paramlist[PARAM_SPHEROID_ASPECT] = 1.0 / aspect;
      *profit->paramlist[PARAM_SPHEROID_POSANG] += 90.0;
      }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
    obj2->prof_spheroid_flux = *profit->paramlist[PARAM_SPHEROID_FLUX];
    obj2->prof_spheroid_fluxerr =
		profit->paramerr[profit->paramindex[PARAM_SPHEROID_FLUX]];
    obj2->prof_spheroid_reff = *profit->paramlist[PARAM_SPHEROID_REFF];
    obj2->prof_spheroid_refferr = 
		profit->paramerr[profit->paramindex[PARAM_SPHEROID_REFF]];
    obj2->prof_spheroid_aspect = *profit->paramlist[PARAM_SPHEROID_ASPECT];
    obj2->prof_spheroid_aspecterr = 
		profit->paramerr[profit->paramindex[PARAM_SPHEROID_ASPECT]];
    obj2->prof_spheroid_theta =
			fmod_m90_p90(*profit->paramlist[PARAM_SPHEROID_POSANG]);
    obj2->prof_spheroid_thetaerr = 
		profit->paramerr[profit->paramindex[PARAM_SPHEROID_POSANG]];
    if (FLAG(obj2.prof_spheroid_sersicn))
      {
      obj2->prof_spheroid_sersicn = *profit->paramlist[PARAM_SPHEROID_SERSICN];
      obj2->prof_spheroid_sersicnerr = 
		profit->paramerr[profit->paramindex[PARAM_SPHEROID_SERSICN]];
      }
589
590
591
592
593
    else
      obj2->prof_spheroid_sersicn = 4.0;
    if (FLAG(obj2.prof_spheroid_peak))
      {
      n = obj2->prof_spheroid_sersicn;
594
      bn = 2.0*n - 1.0/3.0 + 4.0/(405.0*n) + 46.0/(25515.0*n*n)
595
		+ 131.0/(1148175*n*n*n);	/* Ciotti & Bertin 1999 */
596
      cn = n * prof_gamma(2.0*n) * pow(bn, -2.0*n);
597
      obj2->prof_spheroid_peak = obj2->prof_spheroid_reff>0.0?
598
	obj2->prof_spheroid_flux
599
		/ (2.0 * PI * cn
600
		* obj2->prof_spheroid_reff*obj2->prof_spheroid_reff
601
		* obj2->prof_spheroid_aspect)
602
603
	: 0.0;
      if (FLAG(obj2.prof_spheroid_fluxeff))
604
605
606
        obj2->prof_spheroid_fluxeff = obj2->prof_spheroid_peak * exp(-bn);
      if (FLAG(obj2.prof_spheroid_fluxmean))
        obj2->prof_spheroid_fluxmean = obj2->prof_spheroid_peak * cn;
607
      }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
608
609
610
611
612
    }

/* Disk */
  if (FLAG(obj2.prof_disk_flux))
    {
613
614
615
616
617
618
619
620
621
    if ((aspect = *profit->paramlist[PARAM_DISK_ASPECT]) > 1.0)
      {
      *profit->paramlist[PARAM_DISK_SCALE] *= aspect;
      profit->paramerr[profit->paramindex[PARAM_DISK_SCALE]] *= aspect;
      profit->paramerr[profit->paramindex[PARAM_DISK_ASPECT]]
			/= (aspect*aspect);
      *profit->paramlist[PARAM_DISK_ASPECT] = 1.0 / aspect;
      *profit->paramlist[PARAM_DISK_POSANG] += 90.0;
      }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
    obj2->prof_disk_flux = *profit->paramlist[PARAM_DISK_FLUX];
    obj2->prof_disk_fluxerr =
		profit->paramerr[profit->paramindex[PARAM_DISK_FLUX]];
    obj2->prof_disk_scale = *profit->paramlist[PARAM_DISK_SCALE];
    obj2->prof_disk_scaleerr =
		profit->paramerr[profit->paramindex[PARAM_DISK_SCALE]];
    obj2->prof_disk_aspect = *profit->paramlist[PARAM_DISK_ASPECT];
    obj2->prof_disk_aspecterr =
		profit->paramerr[profit->paramindex[PARAM_DISK_ASPECT]];
    obj2->prof_disk_theta = fmod_m90_p90(*profit->paramlist[PARAM_DISK_POSANG]);
    obj2->prof_disk_thetaerr =
		profit->paramerr[profit->paramindex[PARAM_DISK_POSANG]];
    if (FLAG(obj2.prof_disk_inclination))
      {
      obj2->prof_disk_inclination = acos(obj2->prof_disk_aspect) / DEG;
      if (FLAG(obj2.prof_disk_inclinationerr))
        {
        a = sqrt(1.0-obj2->prof_disk_aspect*obj2->prof_disk_aspect);
        obj2->prof_disk_inclinationerr = obj2->prof_disk_aspecterr
					/(a>0.1? a : 0.1)/DEG;
        }
      }

645
646
647
    if (FLAG(obj2.prof_disk_peak))
      {
      obj2->prof_disk_peak = obj2->prof_disk_scale>0.0?
648
	obj2->prof_disk_flux
649
650
651
652
	/ (2.0 * PI * obj2->prof_disk_scale*obj2->prof_disk_scale
		* obj2->prof_disk_aspect)
	: 0.0;
      if (FLAG(obj2.prof_disk_fluxeff))
653
654
655
        obj2->prof_disk_fluxeff = obj2->prof_disk_peak * 0.186682; /* e^-(b_n)*/
      if (FLAG(obj2.prof_disk_fluxmean))
        obj2->prof_disk_fluxmean = obj2->prof_disk_peak * 0.355007;/* b_n^(-2)*/
656
657
      }

Emmanuel Bertin's avatar
Emmanuel Bertin committed
658
659
660
/* Disk pattern */
    if (prefs.pattern_flag)
      {
661
      profit_residuals(profit,field,wfield, PROFIT_DYNPARAM,
662
			profit->paraminit,profit->resi);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
      pattern = pattern_init(profit, prefs.pattern_type,
		prefs.prof_disk_patternncomp);
      pattern_fit(pattern, profit);
      if (FLAG(obj2.prof_disk_patternspiral))
        obj2->prof_disk_patternspiral = pattern_spiral(pattern);
      if (FLAG(obj2.prof_disk_patternvector))
        {
        ncomp = pattern->size[2];
        for (p=0; p<ncomp; p++)
          obj2->prof_disk_patternvector[p] = (float)pattern->coeff[p];
        }
      if (FLAG(obj2.prof_disk_patternmodvector))
        {
        ncomp = pattern->ncomp*pattern->nfreq;
        for (p=0; p<ncomp; p++)
          obj2->prof_disk_patternmodvector[p] = (float)pattern->mcoeff[p];
        }
      if (FLAG(obj2.prof_disk_patternargvector))
        {
        ncomp = pattern->ncomp*pattern->nfreq;
        for (p=0; p<ncomp; p++)
          obj2->prof_disk_patternargvector[p] = (float)pattern->acoeff[p];
        }
      pattern_end(pattern);
      }

/* Bar */
    if (FLAG(obj2.prof_bar_flux))
      {
      obj2->prof_bar_flux = *profit->paramlist[PARAM_BAR_FLUX];
      obj2->prof_bar_fluxerr =
		profit->paramerr[profit->paramindex[PARAM_BAR_FLUX]];
      obj2->prof_bar_length = *profit->paramlist[PARAM_ARMS_START]
				**profit->paramlist[PARAM_DISK_SCALE];
      obj2->prof_bar_lengtherr = *profit->paramlist[PARAM_ARMS_START]
		  * profit->paramerr[profit->paramindex[PARAM_DISK_SCALE]]
		+ *profit->paramlist[PARAM_DISK_SCALE]
		  * profit->paramerr[profit->paramindex[PARAM_ARMS_START]];
      obj2->prof_bar_aspect = *profit->paramlist[PARAM_BAR_ASPECT];
      obj2->prof_bar_aspecterr =
		profit->paramerr[profit->paramindex[PARAM_BAR_ASPECT]];
      obj2->prof_bar_posang = 
			fmod_m90_p90(*profit->paramlist[PARAM_ARMS_POSANG]);
      obj2->prof_bar_posangerr =
		profit->paramerr[profit->paramindex[PARAM_ARMS_POSANG]];
      if (FLAG(obj2.prof_bar_theta))
        {
        cp = cos(obj2->prof_bar_posang*DEG);
        sp = sin(obj2->prof_bar_posang*DEG);
        a = obj2->prof_disk_aspect;
        obj2->prof_bar_theta = fmod_m90_p90(atan2(a*sp,cp)/DEG
				+ obj2->prof_disk_theta);
        obj2->prof_bar_thetaerr = obj2->prof_bar_posangerr*a/(cp*cp+a*a*sp*sp);
        }

/* Arms */
      if (FLAG(obj2.prof_arms_flux))
        {
        obj2->prof_arms_flux = *profit->paramlist[PARAM_ARMS_FLUX];
        obj2->prof_arms_fluxerr =
		profit->paramerr[profit->paramindex[PARAM_ARMS_FLUX]];
        obj2->prof_arms_pitch =
		fmod_m90_p90(*profit->paramlist[PARAM_ARMS_PITCH]);
        obj2->prof_arms_pitcherr =
		profit->paramerr[profit->paramindex[PARAM_ARMS_PITCH]];
        obj2->prof_arms_start = *profit->paramlist[PARAM_ARMS_START]
				**profit->paramlist[PARAM_DISK_SCALE];
        obj2->prof_arms_starterr = *profit->paramlist[PARAM_ARMS_START]
		  * profit->paramerr[profit->paramindex[PARAM_DISK_SCALE]]
		+ *profit->paramlist[PARAM_DISK_SCALE]
		  * profit->paramerr[profit->paramindex[PARAM_ARMS_START]];
        obj2->prof_arms_quadfrac = *profit->paramlist[PARAM_ARMS_QUADFRAC];
        obj2->prof_arms_quadfracerr =
		profit->paramerr[profit->paramindex[PARAM_ARMS_QUADFRAC]];
        obj2->prof_arms_posang =
			fmod_m90_p90(*profit->paramlist[PARAM_ARMS_POSANG]);
        obj2->prof_arms_posangerr =
		profit->paramerr[profit->paramindex[PARAM_ARMS_POSANG]];
        }
      }
    }

745
/* Star/galaxy classification */
746
  if (FLAG(obj2.prof_class_star) || FLAG(obj2.prof_concentration))
747
    {
748
749
750
751
752
753
754
755
756
757
profit_residuals(profit,field,wfield, PROFIT_DYNPARAM, profit->paraminit,
profit->resi);
    pprofit = thepprofit;
    nparam = pprofit->nparam;
    if (pprofit->psfdft)
      {
      QFREE(pprofit->psfdft);
      }
    psf = pprofit->psf;
    pprofit->pixstep = profit->pixstep;
758
759
760
    pprofit->guessradius = profit->guessradius;
    pprofit->guessflux = profit->guessflux;
    pprofit->guessfluxmax = profit->guessfluxmax;
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
    pprofit->ix = profit->ix;
    pprofit->iy = profit->iy;
    pprofit->objnaxisn[0] = profit->objnaxisn[0];
    pprofit->objnaxisn[1] = profit->objnaxisn[1];
    pprofit->subsamp = profit->subsamp;
    pprofit->nobjpix = profit->nobjpix;
    pprofit->obj = obj;
    pprofit->obj2 = obj2;
    pprofit->nresi = profit_copyobjpix(pprofit, field, wfield);
    pprofit->modnaxisn[0] = profit->modnaxisn[0];
    pprofit->modnaxisn[1] = profit->modnaxisn[1];
    pprofit->nmodpix = profit->nmodpix;
    profit_psf(pprofit);
    pprofit->sigma = obj->sigbkg;
    profit_resetparams(pprofit);
776
777
    if (profit->paramlist[PARAM_X] && profit->paramlist[PARAM_Y])
      {
778
779
780
781
782
783
784
785
786
787
788
789
790
      pprofit->paraminit[pprofit->paramindex[PARAM_X]] = *profit->paramlist[PARAM_X];
      pprofit->paraminit[pprofit->paramindex[PARAM_Y]] = *profit->paramlist[PARAM_Y];
      }
    fft_reset();
    pprofit->paraminit[pprofit->paramindex[PARAM_DIRAC_FLUX]] = profit->flux;
    pprofit->niter = profit_minimize(pprofit, PROFIT_MAXITER);
    profit_residuals(pprofit,field,wfield, PROFIT_DYNPARAM, pprofit->paraminit,
			pprofit->resi);
    qprofit = theqprofit;
    nparam = qprofit->nparam;
    if (qprofit->psfdft)
      {
      QFREE(qprofit->psfdft);
791
      }
792
    qprofit->pixstep = profit->pixstep;
793
794
795
    qprofit->guessradius = profit->guessradius;
    qprofit->guessflux = profit->guessflux;
    qprofit->guessfluxmax = profit->guessfluxmax;
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
    qprofit->ix = profit->ix;
    qprofit->iy = profit->iy;
    qprofit->objnaxisn[0] = profit->objnaxisn[0];
    qprofit->objnaxisn[1] = profit->objnaxisn[1];
    qprofit->subsamp = profit->subsamp;
    qprofit->nobjpix = profit->nobjpix;
    qprofit->obj = obj;
    qprofit->obj2 = obj2;
    qprofit->nresi = profit_copyobjpix(qprofit, field, wfield);
    qprofit->modnaxisn[0] = profit->modnaxisn[0];
    qprofit->modnaxisn[1] = profit->modnaxisn[1];
    qprofit->nmodpix = profit->nmodpix;
    profit_psf(qprofit);
    qprofit->sigma = obj->sigbkg;
    profit_resetparams(qprofit);
    fft_reset();
812
813
814
815
816
817
    qprofit->paraminit[qprofit->paramindex[PARAM_X]]
		= pprofit->paraminit[pprofit->paramindex[PARAM_X]];
    qprofit->paraminit[qprofit->paramindex[PARAM_Y]]
		= pprofit->paraminit[pprofit->paramindex[PARAM_Y]];
    qprofit->paraminit[qprofit->paramindex[PARAM_DISK_FLUX]]
		= pprofit->paraminit[pprofit->paramindex[PARAM_DIRAC_FLUX]];
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
    qprofit->paraminit[qprofit->paramindex[PARAM_DISK_SCALE]] = psf->fwhm/16.0;
    qprofit->paraminit[qprofit->paramindex[PARAM_DISK_ASPECT]] = 1.0;
    qprofit->paraminit[qprofit->paramindex[PARAM_DISK_POSANG]] = 0.0;
    profit_residuals(qprofit,field,wfield, PROFIT_DYNPARAM, qprofit->paraminit,
			qprofit->resi);
    sump = sumq = sumpw2 = sumqw2 = sumpqw = sump0 = sumq0 = 0.0;
    for (p=0; p<pprofit->nobjpix; p++)
      if (pprofit->objweight[p]>0 && pprofit->objpix[p]>-BIG)
        {
        valp = pprofit->lmodpix[p];
        sump += (double)(valp*pprofit->objpix[p]);
	valq = qprofit->lmodpix[p];
        sumq += (double)(valq*pprofit->objpix[p]);
	sump0 += (double)(valp*valp);
	sumq0 += (double)(valp*valq);
        sig2 = 1.0f/(pprofit->objweight[p]*pprofit->objweight[p]);
        sumpw2 += valp*valp*sig2;
        sumqw2 += valq*valq*sig2;
        sumpqw += valp*valq*sig2;
        }

839
840
    if (FLAG(obj2.prof_class_star))
      {
841
      dchi2 = 0.5*(pprofit->chi2 - profit->chi2);
842
      obj2->prof_class_star = dchi2 < 50.0?
843
	(dchi2 > -50.0? 2.0/(1.0+expf(dchi2)) : 2.0) : 0.0;
844
845
846
      }
    if (FLAG(obj2.prof_concentration))
      {
847
      obj2->prof_concentration = sump>0.0? (sumq/sump - sumq0/sump0) : 1.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
848
      if (FLAG(obj2.prof_concentrationerr))
849
850
851
        obj2->prof_concentrationerr = sump>0.0?
		sqrt(sumqw2*sump*sump+sumpw2*sumq*sumq-2.0*sumpqw*sump*sumq)
			/ (sump*sump) : 0.0;
852
      }
853
854
    }

Emmanuel Bertin's avatar
Emmanuel Bertin committed
855
/* clean up. */
856
  fft_reset();
857

Emmanuel Bertin's avatar
Emmanuel Bertin committed
858
859
860
  return;
  }

861

862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
/****** profit_noisearea ******************************************************
PROTO	float profit_noisearea(profitstruct *profit)
PURPOSE	Return the equivalent noise area (see King 1983) of a model.
INPUT	Profile-fitting structure,
OUTPUT	Equivalent noise area, in pixels.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	19/10/2010
 ***/
float	profit_noisearea(profitstruct *profit)
  {
   double	dval, flux,flux2;
   PIXTYPE	*pix;
   int		p;

  flux = flux2 = 0.0;
  pix = profit->lmodpix;
  for (p=profit->nobjpix; p--;)
    {
    dval = (double)*(pix++);
    flux += dval;
    flux2 += dval*dval;
    }

  return (float)(flux2>0.0? flux*flux / flux2 : 0.0);
  }


Emmanuel Bertin's avatar
Emmanuel Bertin committed
890
/****** profit_fluxcor ******************************************************
891
PROTO	void profit_fluxcor(profitstruct *profit, objstruct *obj,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
892
893
894
895
896
897
898
899
900
			obj2struct *obj2)
PURPOSE	Integrate the flux within an ellipse and complete it with the wings of
		the fitted model.
INPUT		Profile-fitting structure,
		pointer to the obj structure,
		pointer to the obj2 structure.
OUTPUT	Model-corrected flux.
NOTES	-.
AUTHOR	E. Bertin (IAP)
901
VERSION	12/04/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
902
903
904
 ***/
void	profit_fluxcor(profitstruct *profit, objstruct *obj, obj2struct *obj2)
  {
905
906
907
908
    checkstruct		*check;
    double		mx,my, dx,dy, cx2,cy2,cxy, klim,klim2, tvobj,sigtvobj,
			tvm,tvmin,tvmout, r1,v1;
    PIXTYPE		*objpix,*objpixt,*objweight,*objweightt, *lmodpix,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
909
			pix, weight,var;
910
911
    int			x,y, x2,y2, pos, w,h, area, corrflag;

Emmanuel Bertin's avatar
Emmanuel Bertin committed
912
913
914
915
916
917
918
919
920
921
922
923
924

  corrflag = (prefs.mask_type==MASK_CORRECT);
  w = profit->objnaxisn[0];
  h = profit->objnaxisn[1];
  mx = (float)(w/2);
  my = (float)(h/2);
  if (FLAG(obj2.x_prof))
    {
    if (profit->paramlist[PARAM_X])
      mx += *profit->paramlist[PARAM_X];
    if (profit->paramlist[PARAM_Y])
      my += *profit->paramlist[PARAM_Y];
    }
925

Emmanuel Bertin's avatar
Emmanuel Bertin committed
926
927
928
929
930
  if (obj2->kronfactor>0.0)
    {
    cx2 = obj->cxx;
    cy2 = obj->cyy;
    cxy = obj->cxy;
931
    klim2 = 0.64*obj2->kronfactor*obj2->kronfactor;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
932
933
934
935
936
937
938
939
    }
  else
/*-- ...if not, use the circular aperture provided by the user */
    {
    cx2 = cy2 = 1.0;
    cxy = 0.0;
    klim2 = (prefs.autoaper[1]/2.0)*(prefs.autoaper[1]/2.0);
    }
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
/*
  cx2 = obj2->prof_convcxx;
  cy2 = obj2->prof_convcyy;
  cxy = obj2->prof_convcxy;

  lmodpix = profit->lmodpix;
  r1 = v1 = 0.0;
  for (y=0; y<h; y++)
    {
    dy = y - my;
    for (x=0; x<w; x++)
      {
      dx = x - mx;
      pix = *(lmodpix++);
      r1 += sqrt(cx2*dx*dx + cy2*dy*dy + cxy*dx*dy)*pix;
      v1 += pix;
      }
    }

  klim = r1/v1*2.0;
  klim2 = klim*klim;

if ((check = prefs.check[CHECK_APERTURES]))
sexellips(check->pix, check->width, check->height,
obj2->x_prof-1.0, obj2->y_prof-1.0, klim*obj2->prof_conva,klim*obj2->prof_convb,
obj2->prof_convtheta, check->overlay, 0);
*/
Emmanuel Bertin's avatar
Emmanuel Bertin committed
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004

  area = 0;
  tvmin = tvmout = tvobj = sigtvobj = 0.0;
  lmodpix = profit->lmodpix;
  objpixt = objpix = profit->objpix;
  objweightt = objweight = profit->objweight;
  for (y=0; y<h; y++)
    {
    for (x=0; x<w; x++, objpixt++,objweightt++)
      {
      dx = x - mx;
      dy = y - my;
      if ((cx2*dx*dx + cy2*dy*dy + cxy*dx*dy) <= klim2)
        {
        area++;
/*------ Here begin tests for pixel and/or weight overflows. Things are a */
/*------ bit intricated to have it running as fast as possible in the most */
/*------ common cases */
        if ((weight=*objweightt)<=0.0)
          {
          if (corrflag
		&& (x2=(int)(2*mx+0.49999-x))>=0 && x2<w
		&& (y2=(int)(2*my+0.49999-y))>=0 && y2<h
		&& (weight=objweight[pos = y2*w + x2])>0.0)
            {
            pix = objpix[pos];
            var = 1.0/(weight*weight);
            }
          else
            pix = var = 0.0;
          }
        else
          {
          pix = *objpixt;
          var = 1.0/(weight*weight);
          }
        tvobj += pix;
        sigtvobj += var;
1005
1006
        tvmin += *(lmodpix++);
//        *(lmodpix++) = pix;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
        }
      else
        tvmout += *(lmodpix++);
      }
    }

//  tv -= area*bkg;

  tvm = tvmin + tvmout;
  if (tvm != 0.0)
    {
    obj2->fluxcor_prof = tvobj+obj2->flux_prof*tvmout/tvm;
    obj2->fluxcorerr_prof = sqrt(sigtvobj
			+obj2->fluxerr_prof*obj2->fluxerr_prof*tvmout/tvm);
    }
  else
    {
    obj2->fluxcor_prof = tvobj;
    obj2->fluxcorerr_prof = sqrt(sigtvobj);
    }

1028
1029
1030
1031
/*
  if ((check = prefs.check[CHECK_OTHER]))
    addcheck(check, profit->lmodpix, w, h, profit->ix,profit->iy, 1.0);
*/
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1032
1033
1034
1035
  return;
  }


1036
1037
/****i* prof_gammainc *********************************************************
PROTO	double prof_gammainc(double x, double a)
1038
1039
PURPOSE	Returns the incomplete Gamma function (based on algorithm described in
	Numerical Recipes in C, chap. 6.1).
1040
1041
1042
1043
1044
INPUT	A double,
	upper integration limit.
OUTPUT	Incomplete Gamma function.
NOTES	-.
AUTHOR	E. Bertin (IAP)
1045
VERSION	08/10/2010
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
*/
static double	prof_gammainc (double x, double a)

  {
   double	b,c,d,h, xn,xp, del,sum;
   int		i;

  if (a < 0.0 || x <= 0.0)
    return 0.0;

  if (a < (x+1.0))
    {
/*-- Use the series representation */
    xp = x;
    del = sum = 1.0/x;
    for (i=100;i--;)	/* Iterate to convergence */
      {
      sum += (del *= a/(++xp));
      if (fabs(del) < fabs(sum)*3e-7)
        return sum*exp(-a+x*log(a)) / prof_gamma(x);
      }
    }
  else
    {
/*-- Use the continued fraction representation and take its complement */
    b = a + 1.0 - x;
    c = 1e30;
    h = d = 1.0/b;
    for (i=1; i<=100; i++)	/* Iterate to convergence */
      {
      xn = -i*(i-x);
      b += 2.0;
      if (fabs(d=xn*d+b) < 1e-30)
        d = 1e-30;
      if (fabs(c=b+xn/c) < 1e-30)
        c = 1e-30;
      del= c * (d = 1.0/d);
      h *= del;
      if (fabs(del-1.0) < 3e-7)
        return 1.0 - exp(-a+x*log(a))*h / prof_gamma(x);
      }
    }
  error(EXIT_FAILURE, "*Error*: out of bounds in ",
		"prof_gammainc()");
  return 0.0;
  }


1094
/****i* prof_gamma ************************************************************
1095
PROTO	double prof_gamma(double xx)
1096
1097
PURPOSE	Returns the Gamma function (based on algorithm described in Numerical
	Recipes in C, chap 6.1).
1098
1099
1100
1101
INPUT	A double.
OUTPUT	Gamma function.
NOTES	-.
AUTHOR	E. Bertin (IAP)
1102
VERSION	11/09/2009
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
*/
static double	prof_gamma(double xx)

  {
   double		x,tmp,ser;
   static double	cof[6]={76.18009173,-86.50532033,24.01409822,
			-1.231739516,0.120858003e-2,-0.536382e-5};
   int			j;

  tmp=(x=xx-1.0)+5.5;
  tmp -= (x+0.5)*log(tmp);
  ser=1.0;
  for (j=0;j<6;j++)
    ser += cof[j]/(x+=1.0);

  return 2.50662827465*ser*exp(-tmp);
  }

Emmanuel Bertin's avatar
Emmanuel Bertin committed
1121

1122
1123
1124
1125
1126
1127
1128
1129
1130
/****** profit_minradius ******************************************************
PROTO	float profit_minradius(profitstruct *profit, float refffac)
PURPOSE	Returns the minimum disk radius that guarantees that each and
	every model component fits within some margin in that disk.
INPUT	Profit structure pointer,
	margin in units of (r/r_eff)^(1/n)).
OUTPUT	Radius (in pixels).
NOTES	-.
AUTHOR	E. Bertin (IAP)
1131
VERSION	08/10/2010
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
*/
float	profit_minradius(profitstruct *profit, float refffac)

  {
   double	r,reff,rmax;
   int		p;

  rmax = reff = 0.0;
  for (p=0; p<profit->nprof; p++)
    {
    switch (profit->prof[p]->code)
      {
1144
1145
      case MODEL_BACK:
      case MODEL_DIRAC:
1146
1147
        reff = 0.0;
      break;
1148
      case MODEL_SERSIC:
1149
        reff = *profit->paramlist[PARAM_SPHEROID_REFF];
1150
        break;
1151
      case MODEL_DEVAUCOULEURS:
1152
        reff = *profit->paramlist[PARAM_SPHEROID_REFF];
1153
        break;
1154
      case MODEL_EXPONENTIAL:
1155
        reff = *profit->paramlist[PARAM_DISK_SCALE]*1.67835;
1156
        break;
1157
1158
1159
      default:
        error(EXIT_FAILURE, "*Internal Error*: Unknown profile parameter in ",
		"profit_minradius()");
1160
        break;
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
      }
    r = reff*(double)refffac;
    if (r>rmax)
      rmax = r;
    }

  return (float)rmax;
  }


Emmanuel Bertin's avatar
Emmanuel Bertin committed
1171
1172
1173
1174
1175
1176
1177
/****** profit_psf ************************************************************
PROTO	void	profit_psf(profitstruct *profit)
PURPOSE	Build the local PSF at a given resolution.
INPUT	Profile-fitting structure.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
1178
VERSION	07/07/2010
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1179
1180
1181
 ***/
void	profit_psf(profitstruct *profit)
  {
1182
1183
   double	flux;
   float	posin[2], posout[2], dnaxisn[2],
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1184
		*pixout,
1185
		xcout,ycout, xcin,ycin, invpixstep, norm;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1186
1187
1188
1189
1190
   int		d,i;

  psf = profit->psf;
  psf_build(psf);

1191
1192
  xcout = (float)(profit->modnaxisn[0]/2) + 1.0;	/* FITS convention */
  ycout = (float)(profit->modnaxisn[1]/2) + 1.0;	/* FITS convention */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
  xcin = (psf->masksize[0]/2) + 1.0;			/* FITS convention */
  ycin = (psf->masksize[1]/2) + 1.0;			/* FITS convention */
  invpixstep = profit->pixstep / psf->pixstep;

/* Initialize multi-dimensional counters */
  for (d=0; d<2; d++)
    {
    posout[d] = 1.0;					/* FITS convention */
    dnaxisn[d] = profit->modnaxisn[d]+0.5;
    }

/* Remap each pixel */
  pixout = profit->psfpix;
  flux = 0.0;
  for (i=profit->modnaxisn[0]*profit->modnaxisn[1]; i--;)
    {
    posin[0] = (posout[0] - xcout)*invpixstep + xcin;
    posin[1] = (posout[1] - ycout)*invpixstep + ycin;
    flux += ((*(pixout++) = interpolate_pix(posin, psf->maskloc,
		psf->masksize, INTERP_LANCZOS3)));
    for (d=0; d<2; d++)
      if ((posout[d]+=1.0) < dnaxisn[d])
        break;
      else
        posout[d] = 1.0;
    }

/* Normalize PSF flux (just in case...) */
1221
  flux *= profit->pixstep*profit->pixstep;
1222
1223
1224
1225
1226
1227
1228
  if (fabs(flux) <= 0.0)
    error(EXIT_FAILURE, "*Error*: PSF model is empty or negative: ", psf->name);

  norm = 1.0/flux;
  pixout = profit->psfpix;
  for (i=profit->modnaxisn[0]*profit->modnaxisn[1]; i--;)
    *(pixout++) *= norm;  
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241

  return;
  }


/****** profit_minimize *******************************************************
PROTO	void profit_minimize(profitstruct *profit)
PURPOSE	Provide a function returning residuals to lmfit.
INPUT	Pointer to the profit structure involved in the fit,
	maximum number of iterations.
OUTPUT	Number of iterations used.
NOTES	-.
AUTHOR	E. Bertin (IAP)
1242
VERSION	20/05/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1243
1244
1245
 ***/
int	profit_minimize(profitstruct *profit, int niter)
  {
1246
1247
1248
   double	lm_opts[5], info[LM_INFO_SZ],
		dcovar[PARAM_NPARAM*PARAM_NPARAM], dparam[PARAM_NPARAM];
   int		nfree;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1249

1250
1251
  profit->iter = 0;
  memset(dcovar, 0, profit->nparam*profit->nparam*sizeof(double));
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1252
1253

/* Perform fit */
1254
  lm_opts[0] = 1.0e-3;		/* Initial mu */
1255
1256
1257
  lm_opts[1] = 1.0e-6;		/* ||J^T e||_inf stopping factor */
  lm_opts[2] = 1.0e-6;		/* |Dp||_2 stopping factor */
  lm_opts[3] = 1.0e-6;		/* ||e||_2 stopping factor */
1258
  lm_opts[4] = 1.0e-4;		/* Jacobian step */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1259

1260
1261
  nfree = profit_boundtounbound(profit, profit->paraminit, dparam,
				PARAM_ALLPARAMS);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1262

1263
1264
  niter = dlevmar_dif(profit_evaluate, dparam, NULL, nfree, profit->nresi,
			niter, lm_opts, info, NULL, dcovar, profit);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1265

1266
1267
1268
1269
  profit_unboundtobound(profit, dparam, profit->paraminit, PARAM_ALLPARAMS);

/* Convert covariance matrix to bounded space */
  profit_covarunboundtobound(profit, dcovar, profit->covar);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1270
1271
1272
1273
1274
1275

  return niter;
  }


/****** profit_printout *******************************************************
1276
PROTO	void profit_printout(int n_par, float* par, int m_dat, float* fvec,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
		void *data, int iflag, int iter, int nfev )
PURPOSE	Provide a function to print out results to lmfit.
INPUT	Number of fitted parameters,
	pointer to the vector of parameters,
	number of data points,
	pointer to the vector of residuals (output),
	pointer to the data structure (unused),
	0 (init) 1 (outer loop) 2(inner loop) -1(terminated),
	outer loop counter,
	number of calls to evaluate().
OUTPUT	-.
NOTES	Input arguments are there only for compatibility purposes (unused)
AUTHOR	E. Bertin (IAP)
VERSION	17/09/2008
 ***/
1292
void	profit_printout(int n_par, float* par, int m_dat, float* fvec,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
		void *data, int iflag, int iter, int nfev )
  {
   checkstruct	*check;
   profitstruct	*profit;
   char		filename[256];
   static int	itero;

  profit = (profitstruct *)data;

  if (0 && (iter!=itero || iter<0))
    {
    if (iter<0)
      itero++;
    else
      itero = iter;
    sprintf(filename, "check_%d_%04d.fits", the_gal, itero);
    check=initcheck(filename, CHECK_PROFILES, 0);
    reinitcheck(the_field, check);
    addcheck(check, profit->lmodpix, profit->objnaxisn[0],profit->objnaxisn[1],
		profit->ix,profit->iy, 1.0);

    reendcheck(the_field, check);
    endcheck(check);
    }

  return;
  }


/****** profit_evaluate ******************************************************
1323
1324
PROTO	void profit_evaluate(double *par, double *fvec, int m, int n,
			void *adata)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1325
1326
1327
1328
1329
PURPOSE	Provide a function returning residuals to levmar.
INPUT	Pointer to the vector of parameters,
	pointer to the vector of residuals (output),
	number of model parameters,
	number of data points,
1330
	pointer to a data structure (we use it for the profit structure here).
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1331
OUTPUT	-.
1332
NOTES	-.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1333
AUTHOR	E. Bertin (IAP)
1334
VERSION	20/05/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1335
 ***/
1336
void	profit_evaluate(double *dpar, double *fvec, int m, int n, void *adata)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1337
  {
1338
1339
1340
1341
1342
1343
1344
1345
   profitstruct		*profit;
   profstruct		**prof;
   double		*dpar0, *dresi;
   float		*modpixt, *profpixt, *resi,
			tparam, val;
   PIXTYPE		*lmodpixt,*lmodpix2t, *objpix,*weight,
			wval;
   int			c,f,i,p,q, fd,pd, jflag,sflag, nprof;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1346
1347

  profit = (profitstruct *)adata;
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362

/* Detect "Jacobian-related" calls */
  jflag = pd = fd = 0;
  dpar0 = profit->dparam;
  if (profit->iter)
    {
    f = q = 0;
    for (p=0; p<profit->nparam; p++)
      {
      if (dpar[f] - dpar0[f] != 0.0)
        {
        pd = p;
        fd = f;
        q++;
        }
1363
      if (profit->parfittype[p]!=PARFIT_FIXED)
1364
1365
1366
1367
1368
        f++;
      }
    if (f>0 && q==1)
      jflag = 1;
    }
1369
jflag = 0;	/* Temporarily deactivated (until problems are fixed) */
1370
  if (jflag && !(profit->nprof==1 && profit->prof[0]->code == MODEL_DIRAC))
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
    {
    prof = profit->prof;
    nprof = profit->nprof;

/*-- "Jacobian call" */
    tparam = profit->param[pd];
    profit_unboundtobound(profit, &dpar[fd], &profit->param[pd], pd);
    sflag = 1;
    switch(profit->paramrevindex[pd])
      {
1381
1382
1383
1384
1385
1386
1387
      case PARAM_BACK:
        lmodpixt = profit->lmodpix;
        lmodpix2t = profit->lmodpix2;
        val = (profit->param[pd] - tparam);
        for (i=profit->nobjpix;i--;)
          *(lmodpix2t++) = val;
        break;
1388
1389
1390
1391
1392
1393
1394
1395
      case PARAM_X:
      case PARAM_Y:
        profit_resample(profit, profit->cmodpix, profit->lmodpix2, 1.0);
        lmodpixt = profit->lmodpix;
        lmodpix2t = profit->lmodpix2;
        for (i=profit->nobjpix;i--;)
          *(lmodpix2t++) -= *(lmodpixt++);
        break;
1396
      case PARAM_DIRAC_FLUX:
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
      case PARAM_SPHEROID_FLUX:
      case PARAM_DISK_FLUX:
      case PARAM_ARMS_FLUX:
      case PARAM_BAR_FLUX:
        if (nprof==1 && tparam != 0.0)
          {
          lmodpixt = profit->lmodpix;
          lmodpix2t = profit->lmodpix2;
          val = (profit->param[pd] - tparam) / tparam;
          for (i=profit->nobjpix;i--;)
            *(lmodpix2t++) = val**(lmodpixt++);
          }
        else
          {
          for (c=0; c<nprof; c++)
            if (prof[c]->flux == &profit->param[pd])
              break;
          memcpy(profit->modpix, prof[c]->pix, profit->nmodpix*sizeof(float));
          profit_convolve(profit, profit->modpix);
          profit_resample(profit, profit->modpix, profit->lmodpix2,
		profit->param[pd] - tparam);
          }
        break;
      case PARAM_SPHEROID_REFF:
      case PARAM_SPHEROID_ASPECT:
      case PARAM_SPHEROID_POSANG:
      case PARAM_SPHEROID_SERSICN:
        sflag = 0;			/* We are in the same switch */
        for (c=0; c<nprof; c++)
1426
1427
          if (prof[c]->code == MODEL_SERSIC
		|| prof[c]->code == MODEL_DEVAUCOULEURS)
1428
1429
1430
1431
1432
1433
            break; 
      case PARAM_DISK_SCALE:
      case PARAM_DISK_ASPECT:
      case PARAM_DISK_POSANG:
        if (sflag)
          for (c=0; c<nprof; c++)
1434
            if (prof[c]->code == MODEL_EXPONENTIAL)
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
              break; 
        sflag = 0;
      case PARAM_ARMS_QUADFRAC:
      case PARAM_ARMS_SCALE:
      case PARAM_ARMS_START:
      case PARAM_ARMS_POSANG:
      case PARAM_ARMS_PITCH:
      case PARAM_ARMS_PITCHVAR:
      case PARAM_ARMS_WIDTH:
        if (sflag)
          for (c=0; c<nprof; c++)
1446
            if (prof[c]->code == MODEL_ARMS)
1447
1448
1449
1450
1451
1452
              break; 
        sflag = 0;
      case PARAM_BAR_ASPECT:
      case PARAM_BAR_POSANG:
        if (sflag)
          for (c=0; c<nprof; c++)
1453
            if (prof[c]->code == MODEL_ARMS)
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
              break; 
        modpixt = profit->modpix;
        profpixt = prof[c]->pix;
        val = -*prof[c]->flux;
        for (i=profit->nmodpix;i--;)
          *(modpixt++) = val**(profpixt++);
        memcpy(profit->modpix2, prof[c]->pix, profit->nmodpix*sizeof(float));
        prof_add(profit, prof[c], 0);
        memcpy(prof[c]->pix, profit->modpix2, profit->nmodpix*sizeof(float));
        profit_convolve(profit, profit->modpix);
        profit_resample(profit, profit->modpix, profit->lmodpix2, 1.0);
        break;
      default:
        error(EXIT_FAILURE, "*Internal Error*: ",
			"unknown parameter index in profit_jacobian()");
        break;
      }
    objpix = profit->objpix;
    weight = profit->objweight;
    lmodpixt = profit->lmodpix;
    lmodpix2t = profit->lmodpix2;
    resi = profit->resi;
    dresi = fvec;
    if (PROFIT_DYNPARAM > 0.0)
      for (i=profit->nobjpix;i--; lmodpixt++, lmodpix2t++)
        {
        val = *(objpix++);
        if ((wval=*(weight++))>0.0)
          *(dresi++) = *(resi++) + *lmodpix2t
		* wval/(1.0+wval*fabs(*lmodpixt - val)/PROFIT_DYNPARAM);
        }
    else
      for (i=profit->nobjpix;i--; lmodpix2t++)
        if ((wval=*(weight++))>0.0)
          *(dresi++) = *(resi++) + *lmodpix2t * wval;
    }
  else
    {
/*-- "Regular call" */
    for (p=0; p<profit->nparam; p++)
      dpar0[p] = dpar[p];
    profit_unboundtobound(profit, dpar, profit->param, PARAM_ALLPARAMS);

    profit_residuals(profit, the_field, the_wfield, PROFIT_DYNPARAM,
	profit->param, profit->resi);

    for (p=0; p<profit->nresi; p++)
      fvec[p] = profit->resi[p];
    }

//  profit_printout(m, par, n, fvec, adata, 0, -1, 0 );
  profit->iter++;

Emmanuel Bertin's avatar
Emmanuel Bertin committed
1507
1508
1509
1510
1511
  return;
  }


/****** profit_residuals ******************************************************
1512
1513
PROTO	float *prof_residuals(profitstruct *profit, picstruct *field,
		picstruct *wfield, float dynparam, float *param, float *resi)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1514
1515
1516
1517
1518
PURPOSE	Compute the vector of residuals between the data and the galaxy
	profile model.
INPUT	Profile-fitting structure,
	pointer to the field,
	pointer to the field weight,
1519
	dynamic compression parameter (0=no compression),
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1520
1521
1522
1523
1524
	pointer to the model parameters (output),
	pointer to the computed residuals (output).
OUTPUT	Vector of residuals.
NOTES	-.
AUTHOR	E. Bertin (IAP)
1525
VERSION	08/07/2010
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1526
 ***/
1527
1528
float	*profit_residuals(profitstruct *profit, picstruct *field,
		picstruct *wfield, float dynparam, float *param, float *resi)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1529
  {
1530
   int		p, nmodpix;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1531

1532
1533
  nmodpix = profit->modnaxisn[0]*profit->modnaxisn[1]*sizeof(float);
  memset(profit->modpix, 0, nmodpix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1534
1535
  for (p=0; p<profit->nparam; p++)
    profit->param[p] = param[p];
1536
/* Simple PSF shortcut */
1537
  if (profit->nprof == 1 && profit->prof[0]->code == MODEL_DIRAC)
1538
    {
1539
1540
    profit_resample(profit, profit->psfpix, profit->lmodpix,
		*profit->prof[0]->flux);
1541
1542
    profit->flux = *profit->prof[0]->flux;
    }
1543
1544
  else
    {
1545
    profit->flux = 0.0;
1546
    for (p=0; p<profit->nprof; p++)
1547
1548
1549
1550
      profit->flux += prof_add(profit, profit->prof[p], 0);
    memcpy(profit->cmodpix, profit->modpix, profit->nmodpix*sizeof(float));
    profit_convolve(profit, profit->cmodpix);
    profit_resample(profit, profit->cmodpix, profit->lmodpix, 1.0);
1551
    }
1552
1553
1554

  if (resi)
    profit_compresi(profit, dynparam, resi);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1555
1556
1557
1558
1559
1560

  return resi;
  }


/****** profit_compresi ******************************************************
1561
1562
PROTO	float *prof_compresi(profitstruct *profit, float dynparam,
			float *resi)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1563
1564
1565
PURPOSE	Compute the vector of residuals between the data and the galaxy
	profile model.
INPUT	Profile-fitting structure,
1566
	dynamic-compression parameter (0=no compression),
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1567
1568
1569
1570
	vector of residuals (output).
OUTPUT	Vector of residuals.
NOTES	-.
AUTHOR	E. Bertin (IAP)
1571
VERSION	07/09/2009
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1572
 ***/
1573
float	*profit_compresi(profitstruct *profit, float dynparam, float *resi)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1574
  {
1575
1576
   double	error;
   float	*resit;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1577
1578
   PIXTYPE	*objpix, *objweight, *lmodpix,
		val,val2,wval, invsig;
1579
   int		npix, i;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1580
1581
1582
1583
1584
1585
1586
  
/* Compute vector of residuals */
  resit = resi;
  objpix = profit->objpix;
  objweight = profit->objweight;
  lmodpix = profit->lmodpix;
  error = 0.0;
1587
1588
  npix = profit->objnaxisn[0]*profit->objnaxisn[1];
  if (dynparam > 0.0)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1589
    {
1590
1591
    invsig = (PIXTYPE)(1.0/dynparam);
    for (i=npix; i--; lmodpix++)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1592
1593
1594
1595
      {
      val = *(objpix++);
      if ((wval=*(objweight++))>0.0)
        {
1596
        val2 = (*lmodpix - val)*wval*invsig;
1597
        val2 = val2>0.0? logf(1.0+val2) : -logf(1.0-val2);
1598
        *(resit++) = val2*dynparam;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1599
1600
1601
        error += val2*val2;
        }
      }
1602
1603
1604
1605
1606
1607
1608
1609
1610
    profit->chi2 = dynparam*dynparam*error;
    }
  else
    {
    for (i=npix; i--; lmodpix++)
      {
      val = *(objpix++);
      if ((wval=*(objweight++))>0.0)
        {
1611
        val2 = (*lmodpix - val)*wval;
1612
1613
1614
1615
1616
        *(resit++) = val2;
        error += val2*val2;
        }
      }
    profit->chi2 = error;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1617
1618
1619
1620
1621
1622
1623
    }

  return resi;
  }


/****** profit_resample ******************************************************
1624
1625
PROTO	int	prof_resample(profitstruct *profit, float *inpix,
		PIXTYPE *outpix, float factor)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1626
PURPOSE	Resample the current full resolution model to image resolution.
1627
1628
1629
1630
1631
INPUT	Profile-fitting structure,
	pointer to input raster,
	pointer to output raster,
	multiplicating factor.
OUTPUT	RETURN_ERROR if the rasters don't overlap, RETURN_OK otherwise.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1632
1633
NOTES	-.
AUTHOR	E. Bertin (IAP)
1634
VERSION	12/09/2010
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1635
 ***/
1636
int	profit_resample(profitstruct *profit, float *inpix, PIXTYPE *outpix,
1637
	float factor)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1638
  {
1639
1640
1641
1642
   PIXTYPE	*pixout,*pixout0;
   float	*pixin,*pixin0, *mask,*maskt, *pixinout, *dpixin,*dpixin0,
		*dpixout,*dpixout0, *dx,*dy,
		xcin,xcout,ycin,ycout, xsin,ysin, xin,yin, x,y, dxm,dym, val,
1643
		invpixstep, norm;
1644
1645
1646
1647
1648
1649
   int		*start,*startt, *nmask,*nmaskt,
		i,j,k,n,t, 
		ixsout,iysout, ixout,iyout, dixout,diyout, nxout,nyout,
		iysina, nyin, hmw,hmh, ix,iy, ixin,iyin;

  invpixstep = profit->subsamp/profit->pixstep;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1650

1651
1652
  xcin = (profit->modnaxisn[0]/2);
  xcout = (float)(profit->objnaxisn[0]/2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1653
1654
  if ((dx=(profit->paramlist[PARAM_X])))
    xcout += *dx;
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677

  xsin = xcin - xcout*invpixstep;			/* Input start x-coord*/
  if ((int)xsin >= profit->modnaxisn[0])
    return RETURN_ERROR;
  ixsout = 0;				/* Int. part of output start x-coord */
  if (xsin<0.0)
    {
    dixout = (int)(1.0-xsin/invpixstep);
/*-- Simply leave here if the images do not overlap in x */
    if (dixout >= profit->objnaxisn[0])
      return RETURN_ERROR;
    ixsout += dixout;
    xsin += dixout*invpixstep;
    }
  nxout = (int)((profit->modnaxisn[0]-xsin)/invpixstep);/* nb of interpolated
							input pixels along x */
  if (nxout>(ixout=profit->objnaxisn[0]-ixsout))
    nxout = ixout;
  if (!nxout)
    return RETURN_ERROR;

  ycin = (profit->modnaxisn[1]/2);
  ycout = (float)(profit->objnaxisn[1]/2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1678
1679
1680
  if ((dy=(profit->paramlist[PARAM_Y])))
    ycout += *dy;

1681
1682
1683
1684
1685
  ysin = ycin - ycout*invpixstep;		/* Input start y-coord*/
  if ((int)ysin >= profit->modnaxisn[1])
    return RETURN_ERROR;
  iysout = 0;				/* Int. part of output start y-coord */
  if (ysin<0.0)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1686
    {
1687
1688
1689
1690
1691
1692
    diyout = (int)(1.0-ysin/invpixstep);
/*-- Simply leave here if the images do not overlap in y */
    if (diyout >= profit->objnaxisn[1])
      return RETURN_ERROR;
    iysout += diyout;
    ysin += diyout*invpixstep;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1693
    }
1694
1695
1696
1697
1698
1699
  nyout = (int)((profit->modnaxisn[1]-ysin)/invpixstep);/* nb of interpolated
							input pixels along y */
  if (nyout>(iyout=profit->objnaxisn[1]-iysout))
    nyout = iyout;
  if (!nyout)
    return RETURN_ERROR;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1700

1701
1702
/* Set the yrange for the x-resampling with some margin for interpolation */
  iysina = (int)ysin;	/* Int. part of Input start y-coord with margin */
1703
  hmh = INTERPW/2 - 1;	/* Interpolant start */
1704
1705
  if (iysina<0 || ((iysina -= hmh)< 0))
    iysina = 0;
1706
  nyin = (int)(ysin+nyout*invpixstep)+INTERPW-hmh;/* Interpolated Input y size*/
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
  if (nyin>profit->modnaxisn[1])						/* with margin */
    nyin = profit->modnaxisn[1];
/* Express everything relative to the effective Input start (with margin) */
  nyin -= iysina;
  ysin -= (float)iysina;

/* Allocate interpolant stuff for the x direction */
  QMALLOC(mask, float, nxout*INTERPW);	/* Interpolation masks */
  QMALLOC(nmask, int, nxout);		/* Interpolation mask sizes */
  QMALLOC(start, int, nxout);		/* Int. part of Input conv starts */
/* Compute the local interpolant and data starting points in x */
  hmw = INTERPW/2 - 1;
  xin = xsin;
  maskt = mask;
  nmaskt = nmask;
  startt = start;
  for (j=nxout; j--; xin+=invpixstep)
    {
    ix = (ixin=(int)xin) - hmw;
    dxm = ixin - xin - hmw;	/* starting point in the interpolation func */
    if (ix < 0)
1728
      {
1729
1730
1731
      n = INTERPW+ix;
      dxm -= (float)ix;
      ix = 0;
1732
      }
1733
1734
1735
1736
1737
1738
    else
      n = INTERPW;
    if (n>(t=profit->modnaxisn[0]-ix))
      n=t;
    *(startt++) = ix;
    *(nmaskt++) = n;
1739
    norm = 0.0;
1740
    for (x=dxm, i=n; i--; x+=1.0)
1741
1742
1743
1744
1745
      norm += (*(maskt++) = INTERPF(x));
    norm = norm>0.0? 1.0/norm : 1.0;
    maskt -= n;
    for (i=n; i--;)
      *(maskt++) *= norm;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1746
    }
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759

  QCALLOC(pixinout, float, nxout*nyin);	/* Intermediary frame-buffer */

/* Make the interpolation in x (this includes transposition) */
  pixin0 = inpix + iysina*profit->modnaxisn[0];
  dpixout0 = pixinout;
  for (k=nyin; k--; pixin0+=profit->modnaxisn[0], dpixout0++)
    {
    maskt = mask;
    nmaskt = nmask;
    startt = start;
    dpixout = dpixout0;
    for (j=nxout; j--; dpixout+=nyin)
1760
      {
1761
1762
1763
1764
1765
      pixin = pixin0+*(startt++);
      val = 0.0; 
      for (i=*(nmaskt++); i--;)
        val += *(maskt++)**(pixin++);
      *dpixout = val;
1766
      }
1767
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1768

1769
/* Reallocate interpolant stuff for the y direction */
1770
  QREALLOC(mask, float, nyout*INTERPW);	/* Interpolation masks */
1771
1772
1773
1774
  QREALLOC(nmask, int, nyout);			/* Interpolation mask sizes */
  QREALLOC(start, int, nyout);		/* Int. part of Input conv starts */

/* Compute the local interpolant and data starting points in y */
1775
  hmh = INTERPW/2 - 1;
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
  yin = ysin;
  maskt = mask;
  nmaskt = nmask;
  startt = start;
  for (j=nyout; j--; yin+=invpixstep)
    {
    iy = (iyin=(int)yin) - hmh;
    dym = iyin - yin - hmh;	/* starting point in the interpolation func */
    if (iy < 0)
      {
1786
      n = INTERPW+iy;
1787
1788
1789
1790
      dym -= (float)iy;
      iy = 0;
      }
    else
1791
      n = INTERPW;
1792
1793
1794
1795
    if (n>(t=nyin-iy))
      n=t;
    *(startt++) = iy;
    *(nmaskt++) = n;
1796
    norm = 0.0;
1797
    for (y=dym, i=n; i--; y+=1.0)
1798
1799
1800
1801
1802
      norm += (*(maskt++) = INTERPF(y));
    norm = norm>0.0? 1.0/norm : 1.0;
    maskt -= n;
    for (i=n; i--;)
      *(maskt++) *= norm;
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
    }

/* Initialize destination buffer to zero */
  memset(outpix, 0, (size_t)profit->nobjpix*sizeof(PIXTYPE));

/* Make the interpolation in y and transpose once again */
  dpixin0 = pixinout;
  pixout0 = outpix+ixsout+iysout*profit->objnaxisn[0];
  for (k=nxout; k--; dpixin0+=nyin, pixout0++)
    {
    maskt = mask;
    nmaskt = nmask;
    startt = start;
    pixout = pixout0;
    for (j=nyout; j--; pixout+=profit->objnaxisn[0])
      {
      dpixin = dpixin0+*(startt++);
      val = 0.0; 
      for (i=*(nmaskt++); i--;)
        val += *(maskt++)**(dpixin++);
       *pixout = (PIXTYPE)(factor*val);
      }
    }

/* Free memory */
  free(pixinout);
  free(mask);
  free(nmask);
  free(start);

  return RETURN_OK;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1834
1835
1836
1837
  }


/****** profit_convolve *******************************************************
1838
PROTO	void profit_convolve(profitstruct *profit, float *modpix)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1839
1840
1841
1842
1843
1844
1845
1846
PURPOSE	Convolve a model image with the local PSF.
INPUT	Pointer to the profit structure,
	Pointer to the image raster.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	15/09/2008
 ***/
1847
void	profit_convolve(profitstruct *profit, float *modpix)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1848
1849
1850
1851
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
  {
  if (!profit->psfdft)
    profit_makedft(profit);

  fft_conv(modpix, profit->psfdft, profit->modnaxisn);

  return;
  }


/****** profit_makedft *******************************************************
PROTO	void profit_makedft(profitstruct *profit)
PURPOSE	Create the Fourier transform of the descrambled PSF component.
INPUT	Pointer to the profit structure.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	22/04/2008
 ***/
void	profit_makedft(profitstruct *profit)
  {
   psfstruct	*psf;
1870
1871
   float      *mask,*maskt, *ppix;
   float       dx,dy, r,r2,rmin,rmin2,rmax,rmax2,rsig,invrsig2;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
   int          width,height,npix,offset, psfwidth,psfheight,psfnpix,
                cpwidth, cpheight,hcpwidth,hcpheight, i,j,x,y;

  if (!(psf=profit->psf))
    return;

  psfwidth = profit->modnaxisn[0];
  psfheight = profit->modnaxisn[1];
  psfnpix = psfwidth*psfheight;
  width = profit->modnaxisn[0];
  height = profit->modnaxisn[1];
  npix = width*height;
1884
  QCALLOC(mask, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1885
1886
1887
1888
1889
1890
1891
1892
1893
1894
1895
1896
1897
1898
1899
1900
1901
1902
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
1933
1934
1935
1936
1937
1938
1939
1940
  cpwidth = (width>psfwidth)?psfwidth:width;
  hcpwidth = cpwidth>>1;
  cpwidth = hcpwidth<<1;
  offset = width - cpwidth;
  cpheight = (height>psfheight)?psfheight:height;
  hcpheight = cpheight>>1;
  cpheight = hcpheight<<1;

/* Frame and descramble the PSF data */
  ppix = profit->psfpix + (psfheight/2)*psfwidth + psfwidth/2;
  maskt = mask;
  for (j=hcpheight; j--; ppix+=psfwidth)
    {
    for (i=hcpwidth; i--;)
      *(maskt++) = *(ppix++);      
    ppix -= cpwidth;
    maskt += offset;
    for (i=hcpwidth; i--;)
      *(maskt++) = *(ppix++);      
    }

  ppix = profit->psfpix + ((psfheight/2)-hcpheight)*psfwidth + psfwidth/2;
  maskt += width*(height-cpheight);
  for (j=hcpheight; j--; ppix+=psfwidth)
    {
    for (i=hcpwidth; i--;)
      *(maskt++) = *(ppix++);      
    ppix -= cpwidth;
    maskt += offset;
    for (i=hcpwidth; i--;)
      *(maskt++) = *(ppix++);      
    }

/* Truncate to a disk that has diameter = (box width) */
  rmax = cpwidth - 1.0 - hcpwidth;
  if (rmax > (r=hcpwidth))
    rmax = r;
  if (rmax > (r=cpheight-1.0-hcpheight))
    rmax = r;
  if (rmax > (r=hcpheight))
    rmax = r;
  if (rmax<1.0)
    rmax = 1.0;
  rmax2 = rmax*rmax;
  rsig = psf->fwhm/profit->pixstep;
  invrsig2 = 1/(2*rsig*rsig);
  rmin = rmax - (3*rsig);     /* 3 sigma annulus (almost no aliasing) */
  rmin2 = rmin*rmin;

  maskt = mask;
  dy = 0.0;
  for (y=hcpheight; y--; dy+=1.0)
    {
    dx = 0.0;
    for (x=hcpwidth; x--; dx+=1.0, maskt++)
      if ((r2=dx*dx+dy*dy)>rmin2)
1941
        *maskt *= (r2>rmax2)?0.0:expf((2*rmin*sqrtf(r2)-r2-rmin2)*invrsig2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1942
1943
1944
1945
    dx = -hcpwidth;
    maskt += offset;
    for (x=hcpwidth; x--; dx+=1.0, maskt++)
      if ((r2=dx*dx+dy*dy)>rmin2)
1946
        *maskt *= (r2>rmax2)?0.0:expf((2*rmin*sqrtf(r2)-r2-rmin2)*invrsig2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1947
1948
1949
1950
1951
1952
1953
1954
    }
  dy = -hcpheight;
  maskt += width*(height-cpheight);
  for (y=hcpheight; y--; dy+=1.0)
    {
    dx = 0.0;
    for (x=hcpwidth; x--; dx+=1.0, maskt++)
      if ((r2=dx*dx+dy*dy)>rmin2)
1955
        *maskt *= (r2>rmax2)?0.0:expf((2*rmin*sqrtf(r2)-r2-rmin2)*invrsig2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1956
1957
1958
1959
    dx = -hcpwidth;
    maskt += offset;
    for (x=hcpwidth; x--; dx+=1.0, maskt++)
      if ((r2=dx*dx+dy*dy)>rmin2)
1960
        *maskt *= (r2>rmax2)?0.0:expf((2*rmin*sqrtf(r2)-r2-rmin2)*invrsig2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
    }

/* Finally move to Fourier space */
  profit->psfdft = fft_rtf(mask, profit->modnaxisn);

  free(mask);

  return;
  }


/****** profit_copyobjpix *****************************************************
PROTO	int profit_copyobjpix(profitstruct *profit, picstruct *field,
			picstruct *wfield)
PURPOSE	Copy a piece of the input field image to a profit structure.
INPUT	Pointer to the profit structure,
	Pointer to the field structure,
	Pointer to the field weight structure.
OUTPUT	The number of valid pixels copied.
NOTES	Global preferences are used.
AUTHOR	E. Bertin (IAP)
1982
VERSION	01/12/2009
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1983
1984
1985
1986
 ***/
int	profit_copyobjpix(profitstruct *profit, picstruct *field,
			picstruct *wfield)
  {
1987
1988
1989
1990
   float	dx, dy2, dr2, rad2;
   PIXTYPE	*pixin,*spixin, *wpixin,*swpixin, *pixout,*wpixout,
		backnoise2, invgain, satlevel, wthresh, pix,spix, wpix,swpix;
   int		i,x,y, xmin,xmax,ymin,ymax, w,h,dw, npix, off, gainflag,
1991
		badflag, sflag, sx,sy,sn,sw, ix,iy;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1992
1993
1994
1995

/* First put the image background to -BIG */
  pixout = profit->objpix;
  wpixout = profit->objweight;
1996
  for (i=profit->objnaxisn[0]*profit->objnaxisn[1]; i--;)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
1997
1998
1999
2000
2001
2002
2003
2004
2005
2006
2007
2008
    {
    *(pixout++) = -BIG;
    *(wpixout++) = 0.0;
    }

/* Don't go further if out of frame!! */
  ix = profit->ix;
  iy = profit->iy;
  if (ix<0 || ix>=field->width || iy<field->ymin || iy>=field->ymax)
    return 0;

  backnoise2 = field->backsig*field->backsig;
2009
  sn = (int)profit->subsamp;
2010
2011
2012
2013
2014
  sflag = (sn>1);
  w = profit->objnaxisn[0]*sn;
  h = profit->objnaxisn[1]*sn;
  if (sflag)
    backnoise2 *= (PIXTYPE)sn;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2015
2016
2017
2018
2019
2020
2021
2022
2023
2024
2025
2026
2027
2028
  invgain = (field->gain > 0.0) ? 1.0/field->gain : 0.0;
  satlevel = field->satur_level - profit->obj->bkg;
  rad2 = h/2.0;
  if (rad2 > w/2.0)
    rad2 = w/2.0;
  rad2 *= rad2;

/* Set the image boundaries */
  pixout = profit->objpix;
  wpixout = profit->objweight;
  ymin = iy-h/2;
  ymax = ymin + h;
  if (ymin<field->ymin)
    {
2029
2030
2031
2032
    off = (field->ymin-ymin-1)/sn + 1;
    pixout += off*profit->objnaxisn[0];
    wpixout += off*profit->objnaxisn[0];
    ymin += off*sn;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2033
2034
    }
  if (ymax>field->ymax)
2035
    ymax -= ((ymax-field->ymax-1)/sn + 1)*sn;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2036
2037
2038

  xmin = ix-w/2;
  xmax = xmin + w;
2039
  dw = 0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2040
2041
  if (xmax>field->width)
    {
2042
2043
2044
    off = (xmax-field->width-1)/sn + 1;
    dw += off;
    xmax -= off*sn;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2045
2046
2047
    }
  if (xmin<0)
    {
2048
2049
2050
2051
2052
2053
2054
2055
2056
2057
2058
2059
2060
2061
2062
2063
2064
2065
2066
2067
2068
2069
2070
2071
2072
    off = (-xmin-1)/sn + 1;
    pixout += off;
    wpixout += off;
    dw += off;
    xmin += off*sn;
    }
/* Make sure the input frame size is a multiple of the subsampling step */
  if (sflag)
    {
/*
    if (((rem=ymax-ymin)%sn))
      {
      ymin += rem/2;
      ymax -= (rem-rem/2);
      }
    if (((rem=xmax-xmin)%sn))
      {
      xmin += rem/2;
      pixout += rem/2;
      wpixout += rem/2;
      dw += rem;
      xmax -= (rem-rem/2);
      }
*/
    sw = field->width;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2073
2074
2075
2076
2077
2078
2079
2080
    }

/* Copy the right pixels to the destination */
  npix = 0;
  if (wfield)
    {
    wthresh = wfield->weight_thresh;
    gainflag = prefs.weightgain_flag;
2081
    if (sflag)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2082
      {
2083
2084
/*---- Sub-sampling case */
      for (y=ymin; y<ymax; y+=sn, pixout+=dw,wpixout+=dw)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2085
        {
2086
        for (x=xmin; x<xmax; x+=sn)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2087
          {
2088
2089
2090
2091
2092
2093
2094
2095
2096
2097
2098
2099
2100
2101
2102
2103
2104
2105
2106
2107
2108
2109
2110
2111
2112
2113
2114
2115
          pix = wpix = 0.0;
          badflag = 0;
          for (sy=0; sy<sn; sy++)
            {
            dy2 = (y+sy-iy);
            dy2 *= dy2;
            dx = (x-ix);
            spixin = &PIX(field, x, y+sy);
            swpixin = &PIX(wfield, x, y+sy);
            for (sx=sn; sx--;)
              {
              dr2 = dy2 + dx*dx;
              dx++;
              spix = *(spixin++);
              swpix = *(swpixin++);
              if (dr2<rad2 && spix>-BIG && spix<satlevel && swpix<wthresh)
                {
                pix += spix;
                wpix += swpix;
                }
              else
                badflag=1;
              }
            }
          *(pixout++) = pix;
          if (!badflag)	/* A single bad pixel ruins is all (saturation, etc.)*/
            {
            *(wpixout++) = 1.0 / sqrt(wpix+(pix>0.0?
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2116
		(gainflag? pix*wpix/backnoise2:pix)*invgain : 0.0));
2117
2118
2119
2120
            npix++;
            }
          else
            *(wpixout++) = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2121
2122
2123
          }
        }
      }
2124
2125
2126
2127
2128
2129
2130
2131
2132
2133
2134
2135
2136
2137
2138
2139
2140
2141
2142
2143
2144
2145
2146
2147
    else
      for (y=ymin; y<ymax; y++, pixout+=dw,wpixout+=dw)
        {
        dy2 = y-iy;
        dy2 *= dy2;
        pixin = &PIX(field, xmin, y);
        wpixin = &PIX(wfield, xmin, y);
        for (x=xmin; x<xmax; x++)
          {
          dx = x-ix;
          dr2 = dy2 + dx*dx;
          pix = *(pixin++);
          wpix = *(wpixin++);
          if (dr2<rad2 && pix>-BIG && pix<satlevel && wpix<wthresh)
            {
            *(pixout++) = pix;
            *(wpixout++) = 1.0 / sqrt(wpix+(pix>0.0?
		(gainflag? pix*wpix/backnoise2:pix)*invgain : 0.0));
            npix++;
            }
          else
            *(pixout++) = *(wpixout++) = 0.0;
          }
        }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2148
2149
    }
  else
2150
2151
    {
    if (sflag)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2152
      {
2153
2154
/*---- Sub-sampling case */
      for (y=ymin; y<ymax; y+=sn, pixout+=dw, wpixout+=dw)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2155
        {
2156
        for (x=xmin; x<xmax; x+=sn)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2157
          {
2158
2159
2160
2161
2162
2163
2164
2165
2166
2167
2168
2169
2170
2171
2172
2173
2174
2175
2176
2177
2178
2179
2180
2181
2182
2183
2184
          pix = 0.0;
          badflag = 0;
          for (sy=0; sy<sn; sy++)
            {
            dy2 = y+sy-iy;
            dy2 *= dy2;
            dx = x-ix;
            spixin = &PIX(field, x, y+sy);
            for (sx=sn; sx--;)
              {
              dr2 = dy2 + dx*dx;
              dx++;
              spix = *(spixin++);
              if (dr2<rad2 && spix>-BIG && spix<satlevel)
                pix += spix;
              else
                badflag=1;
              }
            }
          *(pixout++) = pix;
          if (!badflag)	/* A single bad pixel ruins is all (saturation, etc.)*/
            {
            *(wpixout++) = 1.0 / sqrt(backnoise2 + (pix>0.0?pix*invgain:0.0));
            npix++;
            }
          else
            *(wpixout++) = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2185
2186
2187
          }
        }
      }
2188
2189
2190
2191
2192
2193
2194
2195
2196
2197
2198
2199
2200
2201
2202
2203
2204
2205
2206
2207
2208
2209
    else
      for (y=ymin; y<ymax; y++, pixout+=dw,wpixout+=dw)
        {
        dy2 = y-iy;
        dy2 *= dy2;
        pixin = &PIX(field, xmin, y);
        for (x=xmin; x<xmax; x++)
          {
          dx = x-ix;
          dr2 = dy2 + dx*dx;
          pix = *(pixin++);
          if (dr2<rad2 && pix>-BIG && pix<satlevel)
            {
            *(pixout++) = pix;
            *(wpixout++) = 1.0 / sqrt(backnoise2 + (pix>0.0?pix*invgain : 0.0));
            npix++;
            }
          else
            *(pixout++) = *(wpixout++) = 0.0;
          }
        }
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2210
2211
2212
2213
2214
2215
 
  return npix;
  }


/****** profit_spiralindex ****************************************************
2216
PROTO	float profit_spiralindex(profitstruct *profit)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2217
2218
2219
2220
2221
2222
2223
PURPOSE	Compute the spiral index of a galaxy image (positive for arms
	extending counter-clockwise and negative for arms extending CW, 0 for
	no spiral pattern).
INPUT	Profile-fitting structure.
OUTPUT	Vector of residuals.
NOTES	-.
AUTHOR	E. Bertin (IAP)
2224
VERSION	18/05/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2225
 ***/
2226
float profit_spiralindex(profitstruct *profit)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2227
2228
2229
  {
   objstruct	*obj;
   obj2struct	*obj2;
2230
   float	*dx,*dy, *fdx,*fdy, *gdx,*gdy, *gdxt,*gdyt, *pix,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2231
2232
2233
2234
2235
2236
2237
2238
2239
2240
		fwhm, invtwosigma2, hw,hh, ohw,ohh, x,y,xstart, tx,ty,txstart,
		gx,gy, r2, spirindex, invsig, val, sep;
   PIXTYPE	*fpix;
   int		i,j, npix;

  npix = profit->objnaxisn[0]*profit->objnaxisn[1];

  obj = profit->obj;
  obj2 = profit->obj2;
/* Compute simple derivative vectors at a fraction of the object scale */
2241
  fwhm = profit->guessradius * 2.0 / 4.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2242
2243
2244
2245
2246
  if (fwhm < 2.0)
    fwhm = 2.0;
  sep = 2.0;

  invtwosigma2 = -(2.35*2.35/(2.0*fwhm*fwhm));
2247
  hw = (float)(profit->objnaxisn[0]/2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2248
  ohw = profit->objnaxisn[0] - hw;
2249
  hh = (float)(profit->objnaxisn[1]/2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2250
2251
2252
  ohh = profit->objnaxisn[1] - hh;
  txstart = -hw;
  ty = -hh;
2253
  QMALLOC(dx, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2254
2255
2256
2257
2258
2259
2260
2261
2262
2263
2264
2265
  pix = dx;
  for (j=profit->objnaxisn[1]; j--; ty+=1.0)
    {
    tx = txstart;
    y = ty < -0.5? ty + hh : ty - ohh;
    for (i=profit->objnaxisn[0]; i--; tx+=1.0)
      {
      x = tx < -0.5? tx + hw : tx - ohw;
      *(pix++) = exp(invtwosigma2*((x+sep)*(x+sep)+y*y))
		- exp(invtwosigma2*((x-sep)*(x-sep)+y*y));
      }
    }
2266
  QMALLOC(dy, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2267
2268
2269
2270
2271
2272
2273
2274
2275
2276
2277
2278
2279
2280
  pix = dy;
  ty = -hh;
  for (j=profit->objnaxisn[1]; j--; ty+=1.0)
    {
    tx = txstart;
    y = ty < -0.5? ty + hh : ty - ohh;
    for (i=profit->objnaxisn[0]; i--; tx+=1.0)
      {
      x = tx < -0.5? tx + hw : tx - ohw;
      *(pix++) = exp(invtwosigma2*(x*x+(y+sep)*(y+sep)))
		- exp(invtwosigma2*(x*x+(y-sep)*(y-sep)));
      }
    }

2281
  QMALLOC(gdx, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2282
2283
2284
2285
2286
2287
2288
2289
2290
  gdxt = gdx;
  fpix = profit->objpix;
  invsig = npix/profit->sigma;
  for (i=npix; i--; fpix++)
    {
    val = *fpix > -1e29? *fpix*invsig : 0.0;
    *(gdxt++) = (val>0.0? log(1.0+val) : -log(1.0-val));
    }
  gdy = NULL;			/* to avoid gcc -Wall warnings */
2291
  QMEMCPY(gdx, gdy, float, npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2292
2293
2294
2295
2296
2297
  fdx = fft_rtf(dx, profit->objnaxisn);
  fft_conv(gdx, fdx, profit->objnaxisn);
  fdy = fft_rtf(dy, profit->objnaxisn);
  fft_conv(gdy, fdy, profit->objnaxisn);

/* Compute estimator */
2298
  invtwosigma2 = -1.18*1.18 / (2.0*profit->guessradius*profit->guessradius);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2299
2300
2301
2302
2303
2304
2305
2306
2307
2308
2309
2310
2311
2312
2313
2314
2315
2316
2317
2318
2319
2320
2321
2322
2323
2324
2325
2326
2327
2328
  xstart = -hw - obj->mx + (int)(obj->mx+0.49999);
  y = -hh -  obj->my + (int)(obj->my+0.49999);;
  spirindex = 0.0;
  gdxt = gdx;
  gdyt = gdy;
  for (j=profit->objnaxisn[1]; j--; y+=1.0)
    {
    x = xstart;
    for (i=profit->objnaxisn[0]; i--; x+=1.0)
      {
      gx = *(gdxt++);
      gy = *(gdyt++);
      if ((r2=x*x+y*y)>0.0)
        spirindex += (x*y*(gx*gx-gy*gy)+gx*gy*(y*y-x*x))/r2
			* exp(invtwosigma2*r2);
      }
    }

  free(dx);
  free(dy);
  free(fdx);
  free(fdy);
  free(gdx);
  free(gdy);

  return spirindex;
  }


/****** profit_moments ****************************************************
2329
PROTO	void profit_moments(profitstruct *profit, obj2struct *obj2)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2330
PURPOSE	Compute the 2nd order moments from the unconvolved object model.
2331
2332
INPUT	Profile-fitting structure,
	Pointer to obj2 structure.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2333
2334
2335
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
2336
VERSION	22/04/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2337
 ***/
2338
void	 profit_moments(profitstruct *profit, obj2struct *obj2)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2339
  {
2340
   profstruct	*prof;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2341
2342
2343
2344
2345
2346
   double	dpdmx2[6], cov[4],
		*jac,*jact, *pjac,*pjact, *dcovar,*dcovart,
		*dmx2,*dmy2,*dmxy,
		m0,invm0, mx2,my2,mxy, den,invden,
		temp, temp2,invtemp2,invstemp2,
		pmx2,theta, flux, dval;
2347
   float	 *covart;
2348
   int		findex[MODEL_NMAX],
2349
		i,j,p, nparam;
2350
2351
2352
2353
2354
2355
2356
2357
2358
2359
2360
2361
2362
2363
2364
2365
2366
2367
2368
2369
2370
2371
2372
2373
2374
2375
2376
2377
2378
2379
2380
2381
2382
2383

/*  hw = (float)(profit->modnaxisn[0]/2);*/
/*  hh = (float)(profit->modnaxisn[1]/2);*/
/*  r2max = hw<hh? hw*hw : hh*hh;*/
/*  xstart = -hw;*/
/*  y = -hh;*/
/*  pix = profit->modpix;*/
/*  mx2 = my2 = mxy = mx = my = sum = 0.0;*/
/*  for (iy=profit->modnaxisn[1]; iy--; y+=1.0)*/
/*    {*/
/*    x = xstart;*/
/*    for (ix=profit->modnaxisn[0]; ix--; x+=1.0)*/
/*      if (y*y+x*x <= r2max)*/
/*        {*/
/*        val = *(pix++);*/
/*        sum += val;*/
/*        mx  += val*x;*/
/*        my  += val*y;*/
/*        mx2 += val*x*x;*/
/*        mxy += val*x*y;*/
/*        my2 += val*y*y;*/
/*        }*/
/*      else*/
/*        pix++;*/
/*    }*/

/*  if (sum <= 1.0/BIG)*/
/*    sum = 1.0;*/
/*  mx /= sum;*/
/*  my /= sum;*/
/*  obj2->prof_mx2 = mx2 = mx2/sum - mx*mx;*/
/*  obj2->prof_my2 = my2 = my2/sum - my*my;*/
/*  obj2->prof_mxy = mxy = mxy/sum - mx*my;*/

2384
  nparam = profit->nparam;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2385
  if (FLAG(obj2.prof_e1err) || FLAG(obj2.prof_pol1err))
2386
2387
2388
    {
/*-- Set up Jacobian matrices */
    QCALLOC(jac, double, nparam*3);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2389
2390
2391
2392
2393
2394
    QMALLOC(pjac, double, (nparam<2? 6 : nparam*3));
    QMALLOC(dcovar, double, nparam*nparam);
    dcovart = dcovar;
    covart = profit->covar;
    for (i=nparam*nparam; i--;)
      *(dcovart++) = (double)(*(covart++));
2395
2396
2397
2398
2399
    dmx2 = jac;
    dmy2 = jac+nparam;
    dmxy = jac+2*nparam;
    }
  else
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2400
    jac = pjac = dcovar = dmx2 = dmy2 = dmxy = NULL;
2401

2402
2403
  m0 = mx2 = my2 = mxy = 0.0;
  for (p=0; p<profit->nprof; p++)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2404
    {
2405
    prof = profit->prof[p];
2406
2407
2408
2409
2410
2411
2412
2413
2414
2415
2416
2417
2418
2419
2420
2421
2422
2423
2424
2425
2426
2427
2428
    findex[p] = prof_moments(profit, prof, pjac);
    flux = *prof->flux;
    m0 += flux;
    mx2 += prof->mx2*flux;
    my2 += prof->my2*flux;
    mxy += prof->mxy*flux;
    if (jac)
      {
      jact = jac;
      pjact = pjac;
      for (j=nparam*3; j--;)
        *(jact++) += flux * *(pjact++);
      }
    }
  invm0 = 1.0 / m0;
  obj2->prof_mx2 = (mx2 *= invm0);
  obj2->prof_my2 = (my2 *= invm0);
  obj2->prof_mxy = (mxy *= invm0);
/* Complete the flux derivative of moments */
  if (jac)
    {
    for (p=0; p<profit->nprof; p++)
      {
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2429
2430
2431
2432
      prof = profit->prof[p];
      dmx2[findex[p]] = prof->mx2 - mx2;
      dmy2[findex[p]] = prof->my2 - my2;
      dmxy[findex[p]] = prof->mxy - mxy;
2433
2434
2435
2436
      }
    jact = jac;
    for (j=nparam*3; j--;)
      *(jact++) *= invm0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2437
    }
2438
2439
2440

/* Handle fully correlated profiles (which cause a singularity...) */
  if ((temp2=mx2*my2-mxy*mxy)<0.00694)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2441
    {
2442
2443
2444
2445
2446
    mx2 += 0.0833333;
    my2 += 0.0833333;
    temp2 = mx2*my2-mxy*mxy;
    }

Emmanuel Bertin's avatar
Emmanuel Bertin committed
2447
2448
2449
2450
2451
/* Use the Jacobians to compute the moment covariance matrix */
  if (jac)
    propagate_covar(dcovar, jac, obj2->prof_mx2cov, nparam, 3,
						pjac);	/* We re-use pjac */

2452
  if (FLAG(obj2.prof_pol1))
2453
    {
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2454
/*--- "Polarisation", i.e. module = (a^2-b^2)/(a^2+b^2) */
2455
2456
2457
2458
    if (mx2+my2 > 1.0/BIG)
      {
      obj2->prof_pol1 = (mx2 - my2) / (mx2+my2);
      obj2->prof_pol2 = 2.0*mxy / (mx2 + my2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2459
      if (FLAG(obj2.prof_pol1err))
2460
        {
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2461
2462
2463
2464
2465
2466
2467
2468
2469
2470
2471
2472
2473
2474
2475
2476
/*------ Compute the Jacobian of polarisation */
        invden = 1.0/(mx2+my2);
        dpdmx2[0] =  2.0*my2*invden*invden;
        dpdmx2[1] = -2.0*mx2*invden*invden;
        dpdmx2[2] =  0.0;
        dpdmx2[3] = -2.0*mxy*invden*invden;
        dpdmx2[4] = -2.0*mxy*invden*invden;
        dpdmx2[5] =  2.0*invden;

/*------ Use the Jacobian to compute the polarisation covariance matrix */
        propagate_covar(obj2->prof_mx2cov, dpdmx2, cov, 3, 2,
						pjac);	/* We re-use pjac */
        obj2->prof_pol1err = (float)sqrt(cov[0]<0.0? 0.0: cov[0]);
        obj2->prof_pol2err = (float)sqrt(cov[3]<0.0? 0.0: cov[3]);
        obj2->prof_pol12corr = (dval=cov[0]*cov[3]) > 0.0?
					(float)(cov[1]/sqrt(dval)) : 0.0;
2477
2478
2479
2480
        }
      }
    else
      obj2->prof_pol1 = obj2->prof_pol2
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2481
	= obj2->prof_pol1err = obj2->prof_pol2err = obj2->prof_pol12corr = 0.0;
2482
2483
2484
2485
    }

  if (FLAG(obj2.prof_e1))
    {
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2486
/*--- "Ellipticity", i.e. module = (a-b)/(a+b) */
2487
2488
    if (mx2+my2 > 1.0/BIG)
      {
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2489
2490
      den = (temp2>=0.0) ? mx2+my2+2.0*sqrt(temp2) : mx2+my2;
      invden = 1.0/den;
2491
2492
      obj2->prof_e1 = (float)(invden * (mx2 - my2));
      obj2->prof_e2 = (float)(2.0 * invden * mxy);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2493
      if (FLAG(obj2.prof_e1err))
2494
        {
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2495
/*------ Compute the Jacobian of ellipticity */
2496
        invstemp2 = (temp2>=0.0) ? 1.0/sqrt(temp2) : 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2497
2498
2499
2500
2501
2502
2503
2504
2505
2506
2507
2508
2509
2510
        dpdmx2[0] = ( den - (1.0+my2*invstemp2)*(mx2-my2))*invden*invden;
        dpdmx2[1] = (-den - (1.0+mx2*invstemp2)*(mx2-my2))*invden*invden;
        dpdmx2[2] = 2.0*mxy*invstemp2*(mx2-my2)*invden*invden;
        dpdmx2[3] = -2.0*mxy*(1.0+my2*invstemp2)*invden*invden;
        dpdmx2[4] = -2.0*mxy*(1.0+mx2*invstemp2)*invden*invden;
        dpdmx2[5] =  (2.0*den+4.0*mxy*mxy*invstemp2)*invden*invden;

/*------ Use the Jacobian to compute the ellipticity covariance matrix */
        propagate_covar(obj2->prof_mx2cov, dpdmx2, cov, 3, 2,
					pjac);	/* We re-use pjac */
        obj2->prof_e1err = (float)sqrt(cov[0]<0.0? 0.0: cov[0]);
        obj2->prof_e2err = (float)sqrt(cov[3]<0.0? 0.0: cov[3]);
        obj2->prof_e12corr = (dval=cov[0]*cov[3]) > 0.0?
					(float)(cov[1]/sqrt(dval)) : 0.0;
2511
        }
2512
      }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2513
    else
2514
      obj2->prof_e1 = obj2->prof_e2
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2515
	= obj2->prof_e1err = obj2->prof_e2err = obj2->prof_e12corr = 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2516
    }
2517
2518
2519

  if (FLAG(obj2.prof_cxx))
    {
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2520
2521
2522
2523
    invtemp2 = (temp2>=0.0) ? 1.0/temp2 : 0.0;
    obj2->prof_cxx = (float)(my2*invtemp2);
    obj2->prof_cyy = (float)(mx2*invtemp2);
    obj2->prof_cxy = (float)(-2*mxy*invtemp2);
2524
2525
2526
2527
2528
2529
2530
2531
2532
2533
2534
2535
2536
2537
2538
2539
    }

  if (FLAG(obj2.prof_a))
    {
    if ((fabs(temp=mx2-my2)) > 0.0)
      theta = atan2(2.0 * mxy,temp) / 2.0;
    else
      theta = PI/4.0;

    temp = sqrt(0.25*temp*temp+mxy*mxy);
    pmx2 = 0.5*(mx2+my2);
    obj2->prof_a = (float)sqrt(pmx2 + temp);
    obj2->prof_b = (float)sqrt(pmx2 - temp);
    obj2->prof_theta = theta*180.0/PI;
    }

2540
2541
2542
/* Free memory used by Jacobians */
  free(jac);
  free(pjac);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2543
  free(dcovar);
2544

Emmanuel Bertin's avatar
Emmanuel Bertin committed
2545
2546
2547
2548
  return;
  }


2549
2550
2551
2552
2553
2554
2555
2556
2557
2558
2559
2560
2561
2562
2563
2564
2565
2566
2567
2568
2569
2570
2571
2572
2573
2574
2575
2576
2577
2578
2579
2580
2581
2582
2583
2584
2585
2586
2587
2588
2589
2590
2591
2592
2593
2594
2595
2596
2597
2598
2599
2600
2601
2602
2603
2604
2605
2606
2607
2608
2609
2610
2611
2612
2613
2614
2615
2616
2617
2618
2619
2620
2621
2622
2623
2624
2625
2626
2627
2628
2629
2630
2631
2632
2633
2634
2635
2636
2637
/****** profit_convmoments ****************************************************
PROTO	void profit_convmoments(profitstruct *profit, obj2struct *obj2)
PURPOSE	Compute the 2nd order moments of the convolved object model.
INPUT	Profile-fitting structure,
	Pointer to obj2 structure.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	12/04/2011
 ***/
void	 profit_convmoments(profitstruct *profit, obj2struct *obj2)
  {
   double	hw,hh, r2max, x,xstart,y, mx2,my2,mxy,mx,my,sum, dval,
		temp,temp2,invtemp2, pmx2, theta;
   PIXTYPE	*pix;
   int		ix,iy, w,h;

  w = profit->modnaxisn[0];
  h = profit->modnaxisn[1];
  hw = (double)(w/2);
  hh = (double)(h/2);

  r2max = hw<hh? hw*hw : hh*hh;
  xstart = -hw;
  y = -hh;
  pix = profit->cmodpix;
  mx2 = my2 = mxy = mx = my = sum = 0.0;
  for (iy=h; iy--; y+=1.0)
    {
    x = xstart;
    for (ix=w; ix--; x+=1.0)
      if (y*y+x*x <= r2max)
        {
        dval = *(pix++);
        sum += dval;
        mx  += dval*x;
        my  += dval*y;
        mx2 += dval*x*x;
        mxy += dval*x*y;
        my2 += dval*y*y;
        }
      else
        pix++;
    }

  if (sum <= 1.0/BIG)
    sum = 1.0;
  mx /= sum;
  my /= sum;
  obj2->prof_convmx2 = (mx2 = mx2/sum - mx*mx)*profit->pixstep*profit->pixstep;
  obj2->prof_convmy2 = (my2 = my2/sum - my*my)*profit->pixstep*profit->pixstep;
  obj2->prof_convmxy = (mxy = mxy/sum - mx*my)*profit->pixstep*profit->pixstep;

/* Handle fully correlated profiles (which cause a singularity...) */
  if ((temp2=mx2*my2-mxy*mxy)<0.00694)
    {
    mx2 += 0.0833333;
    my2 += 0.0833333;
    temp2 = mx2*my2-mxy*mxy;
    }

  temp2 *= profit->pixstep*profit->pixstep;

  if (FLAG(obj2.prof_convcxx))
    {
    invtemp2 = (temp2>=0.0) ? 1.0/temp2 : 0.0;
    obj2->prof_convcxx = (float)(my2*invtemp2);
    obj2->prof_convcyy = (float)(mx2*invtemp2);
    obj2->prof_convcxy = (float)(-2*mxy*invtemp2);
    }

  if (1 /*FLAG(obj2.prof_conva)*/)
    {
    if ((fabs(temp=mx2-my2)) > 0.0)
      theta = atan2(2.0 * mxy,temp) / 2.0;
    else
      theta = PI/4.0;

    temp = sqrt(0.25*temp*temp+mxy*mxy);
    pmx2 = 0.5*(mx2+my2);
    obj2->prof_conva = (float)sqrt(pmx2 + temp)*profit->pixstep;
    obj2->prof_convb = (float)sqrt(pmx2 - temp)*profit->pixstep;
    obj2->prof_convtheta = theta/DEG;
    }

  return;
  }


2638
/****** profit_surface ****************************************************
2639
PROTO	void profit_surface(profitstruct *profit, obj2struct *obj2)
2640
2641
PURPOSE	Compute surface brightnesses from the unconvolved object model.
INPUT	Pointer to the profile-fitting structure,
2642
	Pointer to obj2 structure.
2643
2644
2645
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
2646
VERSION	06/09/2011
2647
 ***/
2648
void	 profit_surface(profitstruct *profit, obj2struct *obj2)
2649
  {
2650
   profitstruct	hdprofit;
2651
   double	dsum,dhsum,dsumoff, dhval, frac, seff;
2652
2653
2654
2655
2656
2657
2658
2659
2660
2661
2662
2663
2664
2665
2666
2667
2668
2669
   float	*spix, *spixt,
		val,vmax,
		scalefac, imsizefac, flux, lost, sum, lostfluxfrac;
   int		i,p, imax, npix, neff;

/* Allocate "high-definition" raster only to make measurements */
  hdprofit.modnaxisn[0] = hdprofit.modnaxisn[1] = PROFIT_HIDEFRES;
  npix = hdprofit.nmodpix = hdprofit.modnaxisn[0]*hdprofit.modnaxisn[1];
/* Find best image size factor from fitting results */
  imsizefac = 2.0*profit_minradius(profit, PROFIT_REFFFAC)/profit->pixstep
	/ (float)profit->modnaxisn[0];
  if (imsizefac<0.01)
    imsizefac = 0.01;
  else if (imsizefac>100.0)
    imsizefac = 100.0;
  scalefac = (float)hdprofit.modnaxisn[0] / (float)profit->modnaxisn[0]
	/ imsizefac;
  hdprofit.pixstep = profit->pixstep / scalefac;
2670
  hdprofit.fluxfac = 1.0/(hdprofit.pixstep*hdprofit.pixstep);
2671
2672
2673
2674
2675
  QCALLOC(hdprofit.modpix, float,npix*sizeof(float));

  for (p=0; p<profit->nparam; p++)
    profit->param[p] = profit->paraminit[p];
  lost = sum = 0.0;
2676

2677
2678
2679
2680
2681
2682
2683
2684
  for (p=0; p<profit->nprof; p++)
    {
    sum += (flux = prof_add(&hdprofit, profit->prof[p],0));
    lost += flux*profit->prof[p]->lostfluxfrac;
    }
  lostfluxfrac = sum > 0.0? lost / sum : 0.0;
/*
char filename[256];
2685
checkstruct *check;
2686
2687
2688
2689
2690
2691
2692
2693
2694
sprintf(filename, "raster_%02d.fits", the_gal);
check=initcheck(filename, CHECK_OTHER, 0);
check->width = hdprofit.modnaxisn[0];
check->height = hdprofit.modnaxisn[1];
reinitcheck(the_field, check);
memcpy(check->pix,hdprofit.modpix,check->npix*sizeof(float));
reendcheck(the_field, check);
endcheck(check);
*/
2695
2696
  if (FLAG(obj2.fluxeff_prof))
    {
2697
2698
2699
/*-- Sort model pixel values */
    spix = NULL;			/* to avoid gcc -Wall warnings */
    QMEMCPY(hdprofit.modpix, spix, float, npix);
2700
    fqmedian(spix, npix);
2701
2702
2703
2704
2705
2706
2707
2708
2709
2710
2711
2712
2713
2714
2715
2716
2717
2718
2719
2720
2721
2722
2723
2724
2725
2726
2727
2728
2729
2730
2731
2732
2733
2734
2735
2736
/*-- Build a cumulative distribution */
    dsum = 0.0;
    spixt = spix;
    for (i=npix; i--;)
      dsum += (double)*(spixt++);
/*-- Find matching surface brightness */
    if (lostfluxfrac > 1.0)
      lostfluxfrac = 0.0;
    dhsum = 0.5 * dsum / (1.0-lostfluxfrac);
    dsum = lostfluxfrac * dsum / (1.0-lostfluxfrac);
    neff = 0;
    spixt = spix;
    for (i=npix; i--;)
      if ((dsum += (double)*(spixt++)) >= dhsum)
        {
        neff = i;
        break;
        }
    dhval = (double)*(spixt-1);
    seff = neff;
    dsumoff = 0.0;
    if (spixt>=spix+2)
      if (dhval > 0.0 && (frac = (dsum - dhsum) / dhval) < 1.0)
        {
        seff += frac;
        dsumoff = frac*dhval;
        dhval = dsumoff + (1.0 - frac)*(double)*(spixt-2);
        }
    obj2->fluxeff_prof = dhval;
    if (FLAG(obj2.fluxmean_prof))
      {
      dsum = dsumoff;
      for (i=neff; i--;)
        dsum += (double)*(spixt++);
      obj2->fluxmean_prof = seff > 0.0? dsum / seff : 0.0;
      }
2737
2738
2739
    free(spix);
    }

2740
/* Compute model peak */
2741
2742
2743
2744
2745
2746
2747
2748
2749
2750
2751
2752
2753
2754
  if (FLAG(obj2.peak_prof))
    {
/*-- Find position of maximum pixel in current hi-def raster */
    imax = 0;
    vmax = -BIG;
    spixt = hdprofit.modpix;
    for (i=npix; i--;)
      if ((val=*(spixt++))>vmax)
        {
        vmax = val;
        imax = i;
        }
    imax = npix-1 - imax;
    obj2->peak_prof = hdprofit.modpix[imax];
2755
2756
    }

2757
2758
/* Free hi-def model raster */
  free(hdprofit.modpix);
2759
2760
2761
2762
2763

  return;
  }


Emmanuel Bertin's avatar
Emmanuel Bertin committed
2764
2765
/****** profit_addparam *******************************************************
PROTO	void profit_addparam(profitstruct *profit, paramenum paramindex,
2766
		float **param)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2767
2768
2769
2770
2771
2772
2773
PURPOSE	Add a profile parameter to the list of fitted items.
INPUT	Pointer to the profit structure,
	Parameter index,
	Pointer to the parameter pointer.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
2774
VERSION	29/03/2010
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2775
2776
 ***/
void	profit_addparam(profitstruct *profit, paramenum paramindex,
2777
		float **param)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2778
2779
2780
2781
2782
2783
2784
2785
2786
  {
/* Check whether the parameter has already be registered */
  if (profit->paramlist[paramindex])
/*-- Yes */
    *param = profit->paramlist[paramindex];
  else
/*-- No */
    {
    *param = profit->paramlist[paramindex] = &profit->param[profit->nparam];
2787
2788
    profit->paramindex[paramindex] = profit->nparam;
    profit->paramrevindex[profit->nparam++] = paramindex;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2789
2790
2791
2792
2793
2794
2795
2796
2797
2798
2799
2800
2801
2802
    }

  return;
  }


/****** profit_resetparam ****************************************************
PROTO	void profit_resetparam(profitstruct *profit, paramenum paramtype)
PURPOSE	Set the initial, lower and upper boundary values of a profile parameter.
INPUT	Pointer to the profit structure,
	Parameter index.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
2803
VERSION	18/05/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2804
2805
2806
2807
2808
 ***/
void	profit_resetparam(profitstruct *profit, paramenum paramtype)
  {
   objstruct	*obj;
   obj2struct	*obj2;
2809
   float	param, parammin,parammax, range;
2810
   parfitenum	fittype;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2811
2812
2813
2814

  obj = profit->obj;
  obj2 = profit->obj2;
  param = parammin = parammax = 0.0;	/* Avoid gcc -Wall warnings*/
2815

Emmanuel Bertin's avatar
Emmanuel Bertin committed
2816
2817
2818
  switch(paramtype)
    {
    case PARAM_BACK:
2819
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2820
2821
2822
2823
2824
      param = 0.0;
      parammin = -6.0*obj->sigbkg;
      parammax =  6.0*obj->sigbkg;
      break;
    case PARAM_X:
2825
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2826
      param = obj->mx - (int)(obj->mx+0.49999);
2827
      range = profit->guessradius*4.0;
2828
2829
2830
2831
      if (range>profit->objnaxisn[0]*2.0)
        range = profit->objnaxisn[0]*2.0;
      parammin = -range;
      parammax =  range;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2832
2833
      break;
    case PARAM_Y:
2834
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2835
      param = obj->my - (int)(obj->my+0.49999);
2836
      range = profit->guessradius*4.0;
2837
2838
2839
2840
      if (range>profit->objnaxisn[1]*2)
        range = profit->objnaxisn[1]*2;
      parammin = -range;
      parammax =  range;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2841
      break;
2842
    case PARAM_DIRAC_FLUX:
2843
2844
2845
2846
      fittype = PARFIT_LOGBOUND;
      param = profit->guessflux/profit->nprof;
      parammin = 0.00001*profit->guessfluxmax;
      parammax = 10.0*profit->guessfluxmax;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2847
      break;
2848
    case PARAM_SPHEROID_FLUX:
2849
2850
2851
2852
      fittype = PARFIT_LOGBOUND;
      param = profit->guessflux/profit->nprof;
      parammin = 0.00001*profit->guessfluxmax;
      parammax = 10.0*profit->guessfluxmax;
2853
      break;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2854
    case PARAM_SPHEROID_REFF:
2855
2856
2857
      fittype = PARFIT_LOGBOUND;
      param = FLAG(obj2.prof_disk_flux)? profit->guessradius
				: profit->guessradius*sqrtf(obj->a/obj->b);
2858
      parammin = 0.01;
2859
      parammax = param * 10.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2860
2861
      break;
    case PARAM_SPHEROID_ASPECT:
2862
      fittype = PARFIT_LOGBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2863
2864
      param = FLAG(obj2.prof_disk_flux)? 1.0 : obj->b/obj->a;
      parammin = FLAG(obj2.prof_disk_flux)? 0.5 : 0.01;
2865
      parammax = FLAG(obj2.prof_disk_flux)? 2.0 : 100.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2866
2867
      break;
    case PARAM_SPHEROID_POSANG:
2868
      fittype = PARFIT_UNBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2869
      param = obj->theta;
2870
2871
      parammin = 90.0;
      parammax =  90.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2872
2873
      break;
    case PARAM_SPHEROID_SERSICN:
2874
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2875
      param = 4.0;
2876
      parammin = FLAG(obj2.prof_disk_flux)? 1.0 : 0.3;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2877
2878
2879
      parammax = 10.0;
      break;
    case PARAM_DISK_FLUX:
2880
2881
2882
2883
      fittype = PARFIT_LOGBOUND;
      param = profit->guessflux/profit->nprof;
      parammin = 0.00001*profit->guessfluxmax;
      parammax = 10.0*profit->guessfluxmax;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2884
2885
      break;
    case PARAM_DISK_SCALE:	/* From scalelength to Re */
2886
2887
2888
2889
      fittype = PARFIT_LOGBOUND;
      param = profit->guessradius/1.67835*sqrtf(obj->a/obj->b);
      parammin = 0.01/1.67835;
      parammax = param * 10.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2890
2891
      break;
    case PARAM_DISK_ASPECT:
2892
      fittype = PARFIT_LOGBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2893
2894
      param = obj->b/obj->a;
      parammin = 0.01;
2895
      parammax = 100.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2896
2897
      break;
    case PARAM_DISK_POSANG:
2898
      fittype = PARFIT_UNBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2899
      param = obj->theta;
2900
2901
      parammin = 90.0;
      parammax =  90.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2902
2903
      break;
    case PARAM_ARMS_FLUX:
2904
2905
2906
2907
      fittype = PARFIT_LOGBOUND;
      param = profit->guessflux/profit->nprof;
      parammin = 0.00001*profit->guessfluxmax;
      parammax = 10.0*profit->guessfluxmax;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2908
2909
      break;
    case PARAM_ARMS_QUADFRAC:
2910
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2911
2912
2913
2914
2915
      param = 0.5;
      parammin = 0.0;
      parammax = 1.0;
      break;
    case PARAM_ARMS_SCALE:
2916
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2917
2918
2919
2920
2921
      param = 1.0;
      parammin = 0.5;
      parammax = 10.0;
      break;
    case PARAM_ARMS_START:
2922
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2923
2924
2925
2926
2927
      param = 0.5;
      parammin = 0.0;
      parammax = 3.0;
      break;
    case PARAM_ARMS_PITCH:
2928
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2929
2930
2931
2932
2933
      param = 20.0;
      parammin = 5.0;
      parammax = 50.0;
      break;
    case PARAM_ARMS_PITCHVAR:
2934
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2935
2936
2937
2938
2939
2940
2941
2942
2943
2944
2945
2946
2947
      param = 0.0;
      parammin = -1.0;
      parammax = 1.0;
      break;
//      if ((profit->spirindex=profit_spiralindex(profit, obj, obj2)) > 0.0)
//        {
//        param = -param;
//        parammin = -parammax;
//        parammax = -parammin;
//        }
//      printf("spiral index: %g  \n", profit->spirindex);
//      break;
    case PARAM_ARMS_POSANG:
2948
      fittype = PARFIT_UNBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2949
2950
2951
2952
2953
      param = 0.0;
      parammin = 0.0;
      parammax = 0.0;
      break;
    case PARAM_ARMS_WIDTH:
2954
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2955
2956
2957
2958
2959
      param = 3.0;
      parammin = 1.5;
      parammax = 11.0;
      break;
    case PARAM_BAR_FLUX:
2960
2961
2962
2963
      fittype = PARFIT_LOGBOUND;
      param = profit->guessflux/profit->nprof;
      parammin = 0.00001*profit->guessfluxmax;
      parammax = 4.0*profit->guessfluxmax;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2964
2965
      break;
    case PARAM_BAR_ASPECT:
2966
      fittype = PARFIT_LOGBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2967
2968
2969
2970
2971
      param = 0.3;
      parammin = 0.2;
      parammax = 0.5;
      break;
    case PARAM_BAR_POSANG:
2972
      fittype = PARFIT_UNBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2973
      param = 0.0;
2974
2975
      parammin = 90.0;
      parammax = 90.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2976
2977
      break;
    case PARAM_INRING_FLUX:
2978
2979
2980
2981
      fittype = PARFIT_LOGBOUND;
      param = profit->guessflux/profit->nprof;
      parammin = 0.00001*profit->guessfluxmax;
      parammax = 4.0*profit->guessfluxmax;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2982
2983
      break;
    case PARAM_INRING_WIDTH:
2984
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2985
2986
2987
2988
2989
      param = 0.3;
      parammin = 0.0;
      parammax = 0.5;
      break;
    case PARAM_INRING_ASPECT:
2990
      fittype = PARFIT_LOGBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
2991
2992
2993
2994
2995
      param = 0.8;
      parammin = 0.4;
      parammax = 1.0;
      break;
    case PARAM_OUTRING_FLUX:
2996
2997
2998
2999
      fittype = PARFIT_LOGBOUND;
      param = profit->guessflux/profit->nprof;
      parammin = 0.00001*profit->guessfluxmax;
      parammax = 4.0*profit->guessfluxmax;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3000
3001
      break;
    case PARAM_OUTRING_START:
3002
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3003
3004
3005
3006
3007
      param = 4.0;
      parammin = 3.5;
      parammax = 6.0;
      break;
    case PARAM_OUTRING_WIDTH:
3008
      fittype = PARFIT_LINBOUND;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3009
3010
3011
3012
3013
3014
3015
3016
3017
3018
3019
3020
      param = 0.3;
      parammin = 0.0;
      parammax = 0.5;
      break;
    default:
      error(EXIT_FAILURE, "*Internal Error*: Unknown profile parameter in ",
		"profit_resetparam()");
      break;
   }

  if (parammin!=parammax && (param<=parammin || param>=parammax))
    param = (parammin+parammax)/2.0;
3021
3022
  else if (parammin==0.0 && parammax==0.0)
    parammax = 1.0;
3023
  profit_setparam(profit, paramtype, param, parammin, parammax, fittype);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3024
3025
3026
3027
3028
3029
3030
3031
3032
3033
3034
3035
3036
3037
3038
3039
3040
3041
3042
3043
3044
3045
3046
3047
3048
3049
3050
3051

  return;
  }


/****** profit_resetparams ****************************************************
PROTO	void profit_resetparams(profitstruct *profit)
PURPOSE	Set the initial, lower and upper boundary values of profile parameters.
INPUT	Pointer to the profit structure.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	18/09/2008
 ***/
void	profit_resetparams(profitstruct *profit)
  {
   int		p;


  for (p=0; p<PARAM_NPARAM; p++)
    profit_resetparam(profit, (paramenum)p);

  return;
  }


/****** profit_setparam ****************************************************
PROTO	void profit_setparam(profitstruct *profit, paramenum paramtype,
3052
3053
		float param, float parammin, float parammax,
		parfitenum parfittype)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3054
3055
PURPOSE	Set the actual, lower and upper boundary values of a profile parameter.
INPUT	Pointer to the profit structure,
3056
3057
3058
3059
3060
	parameter index,
	actual value,
	lower boundary to the parameter,
	upper boundary to the parameter,
	parameter fitting type.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3061
3062
OUTPUT	RETURN_OK if the parameter is registered, RETURN_ERROR otherwise.
AUTHOR	E. Bertin (IAP)
3063
VERSION	20/05/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3064
3065
 ***/
int	profit_setparam(profitstruct *profit, paramenum paramtype,
3066
3067
		float param, float parammin,float parammax,
		parfitenum parfittype)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3068
  {
3069
   float	*paramptr;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3070
3071
3072
3073
3074
   int		index;

/* Check whether the parameter has already be registered */
  if ((paramptr=profit->paramlist[(int)paramtype]))
    {
3075
    index = profit->paramindex[(int)paramtype];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3076
3077
3078
    profit->paraminit[index] = param;
    profit->parammin[index] = parammin;
    profit->parammax[index] = parammax;
3079
    profit->parfittype[index] = parfittype;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3080
3081
3082
3083
3084
3085
3086
3087
    return RETURN_OK;
    }
  else
    return RETURN_ERROR;
  }

  
/****** profit_boundtounbound *************************************************
3088
PROTO	int profit_boundtounbound(profitstruct *profit,
3089
				float *param, double *dparam, int index)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3090
PURPOSE	Convert parameters from bounded to unbounded space.
3091
3092
3093
3094
INPUT	Pointer to the profit structure,
	input array of single precision parameters,
	output (incomplete) array of double precision parameters,
	parameter selection index (<0 = all parameters)
3095
OUTPUT	Number of free parameters.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3096
3097
NOTES	-.
AUTHOR	E. Bertin (IAP)
3098
VERSION	20/05/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3099
 ***/
3100
int	profit_boundtounbound(profitstruct *profit,
3101
				float *param, double *dparam, int index)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3102
  {
3103
   double	num,den, tparam;
3104
   int		f,p, pstart,np;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3105

3106
3107
3108
3109
3110
3111
3112
3113
3114
3115
3116
3117
3118
  if (index<0)
    {
    pstart = 0;
    np = profit->nparam;
    }
  else
    {
    pstart = index;
    np = pstart+1;
    }

  f = 0;
  for (p=pstart ; p<np; p++)
3119
    switch(profit->parfittype[p])
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3120
      {
3121
3122
3123
3124
3125
3126
3127
3128
3129
      case PARFIT_FIXED:
        break;
      case PARFIT_UNBOUND:
        if (profit->parammax[p] > 0.0 || profit->parammax[p] < 0.0)
          dparam[f] = param[p-pstart] / profit->parammax[p];
        f++;
        break;
      case PARFIT_LINBOUND:
        tparam = param[p-pstart];
3130
3131
3132
        num = tparam - profit->parammin[p];
        den = profit->parammax[p] - tparam;
        dparam[f] = num>1e-50? (den>1e-50? log(num/den): 50.0) : -50.0;
3133
3134
3135
3136
3137
3138
3139
3140
3141
3142
3143
3144
3145
        f++;
        break;
      case PARFIT_LOGBOUND:
        tparam = log(param[p-pstart]);
        num = tparam - log(profit->parammin[p]);
        den = log(profit->parammax[p]) - tparam;
        dparam[f] = num>1e-50? (den>1e-50? log(num/den): 50.0) : -50.0;
        f++;
        break;
      default:
        error(EXIT_FAILURE,
		"*Internal Error*: Unknown parameter fitting type in ",
		"profit_boundtounbound()");
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3146
3147
      }

3148
  return f;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3149
3150
3151
3152
  }


/****** profit_unboundtobound *************************************************
3153
PROTO	int profit_unboundtobound(profitstruct *profit,
3154
				double *dparam, float *param, int index)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3155
PURPOSE	Convert parameters from unbounded to bounded space.
3156
3157
3158
3159
INPUT	Pointer to the profit structure,
	input (incomplete) array of double precision parameters,
	output array of single precision parameters.
	parameter selection index (<0 = all parameters)
3160
OUTPUT	Number of free parameters.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3161
3162
NOTES	-.
AUTHOR	E. Bertin (IAP)
3163
VERSION	20/05/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3164
 ***/
3165
int	profit_unboundtobound(profitstruct *profit,
3166
				double *dparam, float *param, int index)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3167
  {
3168
   int		f,p, pstart,np;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3169

3170
3171
3172
3173
3174
3175
3176
3177
3178
3179
3180
3181
3182
  if (index<0)
    {
    pstart = 0;
    np = profit->nparam;
    }
  else
    {
    pstart = index;
    np = pstart+1;
    }

  f = 0;
  for (p=pstart; p<np; p++)
3183
    switch(profit->parfittype[p])
3184
      {
3185
3186
3187
3188
3189
3190
3191
3192
3193
      case PARFIT_FIXED:
        param[p-pstart] = profit->paraminit[p];
        break;
      case PARFIT_UNBOUND:
        param[p-pstart] = dparam[f]*profit->parammax[p];
        f++;
        break;
      case PARFIT_LINBOUND:
        param[p-pstart] = (profit->parammax[p] - profit->parammin[p])
3194
3195
		/ (1.0 + exp(-(dparam[f]>50.0? 50.0
				: (dparam[f]<-50.0? -50.0: dparam[f]))))
3196
3197
3198
3199
3200
3201
3202
3203
3204
3205
3206
3207
3208
3209
		+ profit->parammin[p];
        f++;
        break;
      case PARFIT_LOGBOUND:
        param[p-pstart] = exp(log(profit->parammax[p]/profit->parammin[p])
		/ (1.0 + exp(-(dparam[f]>50.0? 50.0
				: (dparam[f]<-50.0? -50.0: dparam[f])))))
		*profit->parammin[p];
        f++;
        break;
      default:
        error(EXIT_FAILURE,
		"*Internal Error*: Unknown parameter fitting type in ",
		"profit_unboundtobound()");
3210
      }
3211
3212
 
  return f;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3213
3214
3215
3216
  }


/****** profit_covarunboundtobound ********************************************
3217
PROTO	int profit_covarunboundtobound(profitstruct *profit,
3218
				double *dcovar, float *covar)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3219
PURPOSE	Convert covariance matrix from unbounded to bounded space.
3220
3221
3222
INPUT	Pointer to the profit structure,
	input (incomplete) matrix of double precision covariances,
	output matrix of single precision covariances.
3223
OUTPUT	Number of parameters that hit a boundary.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3224
3225
NOTES	-.
AUTHOR	E. Bertin (IAP)
3226
VERSION	20/05/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3227
 ***/
3228
int	profit_covarunboundtobound(profitstruct *profit,
3229
				double *dcovar, float *covar)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3230
  {
3231
3232
   double	*dxdy,
		xmmin,maxmx, maxmmin;
3233
   float	*x,*xmin,*xmax;
3234
   parfitenum	*fittype;
3235
   int		*fflag,
3236
		f,f1,f2, p,p1,p2, nfree, nparam, nmin,nmax;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3237
3238

  nparam = profit->nparam;
3239
3240
  fittype = profit->parfittype;
  QMALLOC16(dxdy, double, PARAM_NPARAM);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3241
3242
3243
  x = profit->paraminit;
  xmin = profit->parammin;
  xmax = profit->parammax;
3244
  nmin = nmax = 0;
3245
  f = 0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3246
  for (p=0; p<profit->nparam; p++)
3247
    switch(fittype[p])
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3248
      {
3249
3250
3251
      case PARFIT_FIXED:
        break;
      case PARFIT_UNBOUND:
3252
        dxdy[f++] = xmax[p];
3253
3254
3255
3256
3257
3258
3259
3260
3261
3262
3263
3264
3265
3266
3267
3268
3269
3270
3271
3272
3273
3274
3275
3276
3277
        break;
      case PARFIT_LINBOUND:
        xmmin   = x[p] - xmin[p];
        maxmx   = xmax[p] - x[p];
        maxmmin = xmax[p] - xmin[p];
        dxdy[f++] = xmmin * maxmx / maxmmin;
        if (xmmin<0.001*maxmmin)
          nmin++;
        else if (maxmx<0.001*maxmmin)
          nmax++;
        break;
      case PARFIT_LOGBOUND:
        xmmin   = log(x[p]/xmin[p]);
        maxmx   = log(xmax[p]/x[p]);
        maxmmin = log(xmax[p]/xmin[p]);
        dxdy[f++] = x[p] * xmmin * maxmx / maxmmin;
        if (xmmin<0.001*maxmmin)
          nmin++;
        else if (maxmx<0.001*maxmmin)
          nmax++;
        break;
      default:
        error(EXIT_FAILURE,
		"*Internal Error*: Unknown parameter fitting type in ",
		"profit_boundtounbound()");
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3278
3279
      }

3280
3281
  nfree = f;

3282
3283
  memset(profit->covar, 0, nparam*nparam*sizeof(float));
  f2 = 0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3284
  for (p2=0; p2<nparam; p2++)
3285
    {
3286
    if (fittype[p2]!=PARFIT_FIXED)
3287
3288
3289
      {
      f1 = 0;
      for (p1=0; p1<nparam; p1++)
3290
        if (fittype[p1]!=PARFIT_FIXED)
3291
3292
3293
3294
3295
3296
3297
          {
          covar[p2*nparam+p1] = (float)(dcovar[f2*nfree+f1]*dxdy[f1]*dxdy[f2]);
          f1++;
          }
      f2++;
      }
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3298
3299
3300

  free(dxdy);

3301
3302
3303
3304
  profit->nlimmin = nmin;
  profit->nlimmax = nmax;

  return nmin+nmax;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3305
3306
3307
3308
  }


/****** prof_init *************************************************************
3309
PROTO	profstruct prof_init(profitstruct *profit, unsigned int modeltype)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3310
3311
PURPOSE	Allocate and initialize a new profile structure.
INPUT	Pointer to the profile-fitting structure,
3312
	model type.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3313
3314
3315
OUTPUT	A pointer to an allocated prof structure.
NOTES	-.
AUTHOR	E. Bertin (IAP)
3316
VERSION	22/04/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3317
 ***/
3318
profstruct	*prof_init(profitstruct *profit, unsigned int modeltype)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3319
3320
  {
   profstruct	*prof;
3321
   float	*pix,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3322
3323
3324
3325
3326
		rmax2, re2, dy2,r2, scale, zero, k,n, hinvn;
   int		width,height, ixc,iyc, ix,iy, nsub,
		d,s;

  QCALLOC(prof, profstruct, 1);
3327
3328
  prof->code = modeltype;
  switch(modeltype)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3329
    {
3330
3331
    case MODEL_BACK:
      prof->name = "background offset";
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3332
3333
3334
3335
3336
      prof->naxis = 2;
      prof->pix = NULL;
      profit_addparam(profit, PARAM_BACK, &prof->flux);
      prof->typscale = 1.0;
      break;
3337
3338
    case MODEL_DIRAC:
      prof->name = "point source";
3339
3340
3341
3342
3343
3344
3345
3346
3347
3348
      prof->naxis = 2;
      prof->naxisn[0] = PROFIT_MAXMODSIZE;
      prof->naxisn[1] = PROFIT_MAXMODSIZE;
      prof->naxisn[2] = 1;
      prof->npix = prof->naxisn[0]*prof->naxisn[1]*prof->naxisn[2];
      prof->typscale = 1.0;
      profit_addparam(profit, PARAM_X, &prof->x[0]);
      profit_addparam(profit, PARAM_Y, &prof->x[1]);
      profit_addparam(profit, PARAM_DIRAC_FLUX, &prof->flux);
      break;
3349
3350
    case MODEL_SERSIC:
      prof->name = "Sersic spheroid";
3351
3352
3353
3354
3355
3356
      prof->naxis = 2;
      prof->naxisn[0] = PROFIT_MAXMODSIZE;
      prof->naxisn[1] = PROFIT_MAXMODSIZE;
      prof->naxisn[2] = 1;
      prof->npix = prof->naxisn[0]*prof->naxisn[1]*prof->naxisn[2];
      QMALLOC(prof->pix, float, prof->npix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3357
3358
3359
3360
3361
3362
3363
3364
3365
      prof->typscale = 1.0;
      profit_addparam(profit, PARAM_X, &prof->x[0]);
      profit_addparam(profit, PARAM_Y, &prof->x[1]);
      profit_addparam(profit, PARAM_SPHEROID_FLUX, &prof->flux);
      profit_addparam(profit, PARAM_SPHEROID_REFF, &prof->scale);
      profit_addparam(profit, PARAM_SPHEROID_ASPECT, &prof->aspect);
      profit_addparam(profit, PARAM_SPHEROID_POSANG, &prof->posangle);
      profit_addparam(profit, PARAM_SPHEROID_SERSICN, &prof->extra[0]);
      break;
3366
3367
    case MODEL_DEVAUCOULEURS:
      prof->name = "de Vaucouleurs spheroid";
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3368
      prof->naxis = 2;
3369
3370
3371
3372
3373
      prof->naxisn[0] = PROFIT_MAXMODSIZE;
      prof->naxisn[1] = PROFIT_MAXMODSIZE;
      prof->naxisn[2] = 1;
      prof->npix = prof->naxisn[0]*prof->naxisn[1]*prof->naxisn[2];
      QMALLOC(prof->pix, float, profit->nmodpix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3374
3375
3376
3377
3378
3379
3380
3381
      prof->typscale = 1.0;
      profit_addparam(profit, PARAM_X, &prof->x[0]);
      profit_addparam(profit, PARAM_Y, &prof->x[1]);
      profit_addparam(profit, PARAM_SPHEROID_FLUX, &prof->flux);
      profit_addparam(profit, PARAM_SPHEROID_REFF, &prof->scale);
      profit_addparam(profit, PARAM_SPHEROID_ASPECT, &prof->aspect);
      profit_addparam(profit, PARAM_SPHEROID_POSANG, &prof->posangle);
      break;
3382
3383
    case MODEL_EXPONENTIAL:
      prof->name = "exponential disk";
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3384
      prof->naxis = 2;
3385
3386
3387
3388
3389
      prof->naxisn[0] = PROFIT_MAXMODSIZE;
      prof->naxisn[1] = PROFIT_MAXMODSIZE;
      prof->naxisn[2] = 1;
      prof->npix = prof->naxisn[0]*prof->naxisn[1]*prof->naxisn[2];
      QMALLOC(prof->pix, float, profit->nmodpix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3390
3391
3392
3393
3394
3395
3396
3397
      prof->typscale = 1.0;
      profit_addparam(profit, PARAM_X, &prof->x[0]);
      profit_addparam(profit, PARAM_Y, &prof->x[1]);
      profit_addparam(profit, PARAM_DISK_FLUX, &prof->flux);
      profit_addparam(profit, PARAM_DISK_SCALE, &prof->scale);
      profit_addparam(profit, PARAM_DISK_ASPECT, &prof->aspect);
      profit_addparam(profit, PARAM_DISK_POSANG, &prof->posangle);
      break;
3398
3399
    case MODEL_ARMS:
      prof->name = "spiral arms";
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3400
      prof->naxis = 2;
3401
3402
3403
3404
3405
      prof->naxisn[0] = PROFIT_MAXMODSIZE;
      prof->naxisn[1] = PROFIT_MAXMODSIZE;
      prof->naxisn[2] = 1;
      prof->npix = prof->naxisn[0]*prof->naxisn[1]*prof->naxisn[2];
      QMALLOC(prof->pix, float, profit->nmodpix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3406
3407
3408
3409
3410
3411
3412
3413
3414
3415
3416
3417
3418
3419
3420
      prof->typscale = 1.0;
      profit_addparam(profit, PARAM_X, &prof->x[0]);
      profit_addparam(profit, PARAM_Y, &prof->x[1]);
      profit_addparam(profit, PARAM_DISK_SCALE, &prof->scale);
      profit_addparam(profit, PARAM_DISK_ASPECT, &prof->aspect);
      profit_addparam(profit, PARAM_DISK_POSANG, &prof->posangle);
      profit_addparam(profit, PARAM_ARMS_FLUX, &prof->flux);
      profit_addparam(profit, PARAM_ARMS_QUADFRAC, &prof->featfrac);
//      profit_addparam(profit, PARAM_ARMS_SCALE, &prof->featscale);
      profit_addparam(profit, PARAM_ARMS_START, &prof->featstart);
      profit_addparam(profit, PARAM_ARMS_PITCH, &prof->featpitch);
//      profit_addparam(profit, PARAM_ARMS_PITCHVAR, &prof->featpitchvar);
      profit_addparam(profit, PARAM_ARMS_POSANG, &prof->featposang);
//      profit_addparam(profit, PARAM_ARMS_WIDTH, &prof->featwidth);
      break;
3421
3422
    case MODEL_BAR:
      prof->name = "bar";
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3423
      prof->naxis = 2;
3424
3425
3426
3427
3428
      prof->naxisn[0] = PROFIT_MAXMODSIZE;
      prof->naxisn[1] = PROFIT_MAXMODSIZE;
      prof->naxisn[2] = 1;
      prof->npix = prof->naxisn[0]*prof->naxisn[1]*prof->naxisn[2];
      QMALLOC(prof->pix, float, profit->nmodpix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3429
3430
3431
3432
3433
3434
3435
3436
3437
3438
3439
      prof->typscale = 1.0;
      profit_addparam(profit, PARAM_X, &prof->x[0]);
      profit_addparam(profit, PARAM_Y, &prof->x[1]);
      profit_addparam(profit, PARAM_DISK_SCALE, &prof->scale);
      profit_addparam(profit, PARAM_DISK_ASPECT, &prof->aspect);
      profit_addparam(profit, PARAM_DISK_POSANG, &prof->posangle);
      profit_addparam(profit, PARAM_ARMS_START, &prof->featstart);
      profit_addparam(profit, PARAM_BAR_FLUX, &prof->flux);
      profit_addparam(profit, PARAM_BAR_ASPECT, &prof->feataspect);
      profit_addparam(profit, PARAM_ARMS_POSANG, &prof->featposang);
      break;
3440
3441
    case MODEL_INRING:
      prof->name = "inner ring";
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3442
      prof->naxis = 2;
3443
3444
3445
3446
3447
      prof->naxisn[0] = PROFIT_MAXMODSIZE;
      prof->naxisn[1] = PROFIT_MAXMODSIZE;
      prof->naxisn[2] = 1;
      prof->npix = prof->naxisn[0]*prof->naxisn[1]*prof->naxisn[2];
      QMALLOC(prof->pix, float, profit->nmodpix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3448
3449
3450
3451
3452
3453
3454
3455
3456
3457
3458
      prof->typscale = 1.0;
      profit_addparam(profit, PARAM_X, &prof->x[0]);
      profit_addparam(profit, PARAM_Y, &prof->x[1]);
      profit_addparam(profit, PARAM_DISK_SCALE, &prof->scale);
      profit_addparam(profit, PARAM_DISK_ASPECT, &prof->aspect);
      profit_addparam(profit, PARAM_DISK_POSANG, &prof->posangle);
      profit_addparam(profit, PARAM_ARMS_START, &prof->featstart);
      profit_addparam(profit, PARAM_INRING_FLUX, &prof->flux);
      profit_addparam(profit, PARAM_INRING_WIDTH, &prof->featwidth);
      profit_addparam(profit, PARAM_INRING_ASPECT, &prof->feataspect);
      break;
3459
3460
    case MODEL_OUTRING:
      prof->name = "outer ring";
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3461
      prof->naxis = 2;
3462
3463
3464
3465
3466
      prof->naxisn[0] = PROFIT_MAXMODSIZE;
      prof->naxisn[1] = PROFIT_MAXMODSIZE;
      prof->naxisn[2] = 1;
      prof->npix = prof->naxisn[0]*prof->naxisn[1]*prof->naxisn[2];
      QMALLOC(prof->pix, float, profit->nmodpix);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3467
3468
3469
3470
3471
3472
3473
3474
3475
3476
      prof->typscale = 1.0;
      profit_addparam(profit, PARAM_X, &prof->x[0]);
      profit_addparam(profit, PARAM_Y, &prof->x[1]);
      profit_addparam(profit, PARAM_DISK_SCALE, &prof->scale);
      profit_addparam(profit, PARAM_DISK_ASPECT, &prof->aspect);
      profit_addparam(profit, PARAM_DISK_POSANG, &prof->posangle);
      profit_addparam(profit, PARAM_OUTRING_START, &prof->featstart);
      profit_addparam(profit, PARAM_OUTRING_FLUX, &prof->flux);
      profit_addparam(profit, PARAM_OUTRING_WIDTH, &prof->featwidth);
      break;
3477
3478
    case MODEL_TABULATED:	/* An example of tabulated profile */
      prof->name = "tabulated model";
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3479
3480
3481
3482
      prof->naxis = 3;
      width =  prof->naxisn[0] = PROFIT_PROFRES;
      height = prof->naxisn[1] = PROFIT_PROFRES;
      nsub = prof->naxisn[2] = PROFIT_PROFSRES;
3483
      QCALLOC(prof->pix, float, width*height*nsub);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3484
3485
3486
3487
3488
3489
3490
3491
3492
3493
3494
3495
3496
3497
3498
3499
3500
3501
3502
3503
3504
3505
3506
3507
3508
3509
3510
3511
3512
3513
3514
3515
3516
3517
3518
3519
3520
3521
3522
      ixc = width/2;
      iyc = height/2;
      rmax2 = (ixc - 1.0)*(ixc - 1.0);
      re2 = width/64.0;
      prof->typscale = re2;
      re2 *= re2;
      zero = prof->extrazero[0] = 0.2;
      scale = prof->extrascale[0]= 8.0/PROFIT_PROFSRES;
      pix = prof->pix;
      for (s=0; s<nsub; s++)
        {
        n = s*scale + zero;
        hinvn = 0.5/n;
        k = -1.0/3.0 + 2.0*n + 4.0/(405.0*n) + 46.0/(25515.0*n*n)
		+ 131.0/(1148175*n*n*n);
        for (iy=0; iy<height; iy++)
          {
          dy2 = (iy-iyc)*(iy-iyc);
          for (ix=0; ix<width; ix++)
            {
            r2 = dy2 + (ix-ixc)*(ix-ixc);
            *(pix++) = (r2<rmax2)? exp(-k*pow(r2/re2,hinvn)) : 0.0;
            }
          }
        }
      profit_addparam(profit, PARAM_X, &prof->x[0]);
      profit_addparam(profit, PARAM_Y, &prof->x[1]);
      profit_addparam(profit, PARAM_SPHEROID_FLUX, &prof->flux);
      profit_addparam(profit, PARAM_SPHEROID_REFF, &prof->scale);
      profit_addparam(profit, PARAM_SPHEROID_ASPECT, &prof->aspect);
      profit_addparam(profit, PARAM_SPHEROID_POSANG, &prof->posangle);
      profit_addparam(profit, PARAM_SPHEROID_SERSICN, &prof->extra[0]);
      break;
    default:
      error(EXIT_FAILURE, "*Internal Error*: Unknown profile in ",
		"prof_init()");
      break;
    }

3523
3524
3525
  QMALLOC(prof->pix, float, prof->npix);

  if (prof->naxis>2)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3526
3527
3528
3529
3530
3531
3532
3533
3534
    {
    prof->kernelnlines = 1;
    for (d=0; d<prof->naxis; d++)
      {
      prof->interptype[d] = INTERP_BILINEAR;
      prof->kernelnlines *= 
	(prof->kernelwidth[d] = interp_kernwidth[prof->interptype[d]]);
      }
    prof->kernelnlines /= prof->kernelwidth[0];
3535
    QMALLOC16(prof->kernelbuf, float, prof->kernelnlines);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3536
3537
3538
3539
3540
3541
3542
3543
3544
3545
3546
3547
3548
3549
3550
3551
3552
3553
3554
3555
3556
3557
3558
3559
3560
3561
3562
3563
3564
    }

  return prof;
  }  


/****** prof_end **************************************************************
PROTO	void prof_end(profstruct *prof)
PURPOSE	End (deallocate) a profile structure.
INPUT	Prof structure.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	09/04/2007
 ***/
void	prof_end(profstruct *prof)
  {
  if (prof->pix)
    {
    free(prof->pix);
    free(prof->kernelbuf);
    }
  free(prof);

  return;
  }


/****** prof_add **************************************************************
3565
3566
PROTO	float prof_add(profitstruct *profit, profstruct *prof,
		int extfluxfac_flag)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3567
PURPOSE	Add a model profile to an image.
3568
3569
3570
3571
INPUT	Profile-fitting structure,
	profile structure,
	flag (0 if flux correction factor is to be computed internally) 
OUTPUT	Total (asymptotic) flux contribution.
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3572
3573
NOTES	-.
AUTHOR	E. Bertin (IAP)
3574
VERSION	25/07/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3575
 ***/
3576
float	prof_add(profitstruct *profit, profstruct *prof, int extfluxfac_flag)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3577
  {
3578
3579
   double	xscale, yscale, saspect, ctheta,stheta, flux, scaling, bn, n,
		dx1cout,dx2cout, ddx1[36],ddx2[36];
3580
   float	posin[PROFIT_MAXEXTRA], posout[2], dnaxisn[2],
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3581
		*pixin, *pixin2, *pixout,
3582
3583
		fluxfac, amp,cd11,cd12,cd21,cd22, dx1,dx2,
		x1,x10,x2, x1cin,x2cin, x1cout,x2cout, x1max,x2max, x1in,x2in,
3584
		k, hinvn, x1t,x2t, ca,sa, u,umin,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3585
3586
		armamp,arm2amp, armrdphidr, armrdphidrvar, posang,
		width, invwidth2,
3587
3588
		r,r2,rmin, r2minxin,r2minxout, rmax, r2max,
		r2max1, r2max2, r2min, invr2xdif,
3589
3590
		val, theta, thresh, ra,rb, num,num2,den, ang,angstep,
		invn, dr, krpinvn,dkrpinvn, rs,rs2,
3591
3592
3593
		a11,a12,a21,a22, invdet, dca,dsa, a0,a2,a3, p1,p2,
		krspinvn, ekrspinvn, selem;
   int		npix, threshflag,
3594
		a,d,e,i, ix1,ix2, ix1max,ix2max, nang, nx2,
3595
		npix2;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3596

3597
  npix = profit->nmodpix;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3598

3599
  if (prof->code==MODEL_BACK)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3600
3601
3602
3603
3604
    {
    amp = fabs(*prof->flux);
    pixout = profit->modpix;
    for (i=npix; i--;)
      *(pixout++) += amp;
3605
3606
    prof->lostfluxfrac = 0.0;
    return 0.0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3607
3608
3609
3610
    }

  scaling = profit->pixstep / prof->typscale;

3611
  if (prof->code!=MODEL_DIRAC)
3612
3613
3614
3615
3616
3617
    {
/*-- Compute Profile CD matrix */
    ctheta = cos(*prof->posangle*DEG);
    stheta = sin(*prof->posangle*DEG);
    saspect = fabs(*prof->aspect);
    xscale = (*prof->scale==0.0)?
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3618
		0.0 : fabs(scaling / (*prof->scale*prof->typscale));
3619
    yscale = (*prof->scale*saspect == 0.0)?
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3620
		0.0 : fabs(scaling / (*prof->scale*prof->typscale*saspect));
3621
3622
3623
3624
    cd11 = (float)(xscale*ctheta);
    cd12 = (float)(xscale*stheta);
    cd21 = (float)(-yscale*stheta);
    cd22 = (float)(yscale*ctheta);
3625
3626
3627
3628
3629
    dx1 = 0.0;	/* Shifting operations have been moved to profit_resample() */
    dx2 = 0.0;	/* Shifting operations have been moved to profit_resample() */

    x1cout = (float)(profit->modnaxisn[0]/2);
    x2cout = (float)(profit->modnaxisn[1]/2);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3630
    nx2 = profit->modnaxisn[1]/2 + 1;
3631
3632
3633

/*-- Compute the largest r^2 that fits in the frame */
    num = cd11*cd22-cd12*cd21;
3634
    num *= num;
3635
3636
    x1max = x1cout - 1.0;
    x2max = x2cout - 1.0;
3637
3638
3639
3640
3641
3642
3643
    den = fabs(cd12*cd12+cd22*cd22);
    num2 = x1max*x1max*num;
    r2max1 = num2<PROFIT_MAXR2MAX*den? num2 / den : PROFIT_MAXR2MAX;
    den = fabs(cd11*cd11+cd21*cd21);
    num2 = x2max*x2max*num;
    r2max2 = num2<PROFIT_MAXR2MAX*den? num2 / den : PROFIT_MAXR2MAX;
    r2max = (r2max1 < r2max2? r2max1 : r2max2);
3644
    rmax = sqrtf(r2max);
3645
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3646
3647
3648

  switch(prof->code)
    {
3649
    case MODEL_DIRAC:
3650
3651
3652
3653
3654
      prof->pix[profit->modnaxisn[0]/2
		+ (profit->modnaxisn[1]/2)*profit->modnaxisn[0]] = 1.0;
      prof->lostfluxfrac = 0.0;
      threshflag = 0;
      break;
3655
3656
3657
    case MODEL_SERSIC:
    case MODEL_DEVAUCOULEURS:
    case MODEL_EXPONENTIAL:
3658
3659
3660
3661
3662
3663
/*---- Compute sharp/smooth transition radius */
      rs = PROFIT_SMOOTHR*(xscale>yscale?xscale:yscale);
      if (rs<=0)
        rs = 1.0;
      rs2 = rs*rs;
/*---- The consequence of sampling on flux is compensated by PSF normalisation*/
3664
      if (prof->code==MODEL_EXPONENTIAL)
3665
        bn = n = 1.0;
3666
      else if (prof->code==MODEL_DEVAUCOULEURS)
3667
3668
3669
3670
3671
3672
3673
3674
        {
        n = 4.0;
        bn = 7.66924944;
        }
      else
        {
        n = fabs(*prof->extra[0]);
        bn = 2.0*n - 1.0/3.0 + 4.0/(405.0*n) + 46.0/(25515.0*n*n)
3675
		+ 131.0/(1148175*n*n*n);	/* Ciotti & Bertin 1999 */
3676
3677
        }
      invn = 1.0/n;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3678
      hinvn = 0.5/n;
3679
3680
      k = -bn;
/*---- Compute central polynomial terms */
3681
      krspinvn = prof->code==MODEL_EXPONENTIAL? -rs : k*expf(logf(rs)*invn);
3682
3683
3684
3685
3686
3687
3688
      ekrspinvn = expf(krspinvn);
      p2 = krspinvn*invn*invn;
      p1 = krspinvn*p2;
      a0 = (1+(1.0/6.0)*(p1+(1.0-5.0*n)*p2))*ekrspinvn;
      a2 = (-1.0/2.0)*(p1+(1.0-3.0*n)*p2)/rs2*ekrspinvn;
      a3 = (1.0/3.0)*(p1+(1.0-2.0*n)*p2)/(rs2*rs)*ekrspinvn;
/*---- Compute the smooth part of the profile */
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3689
3690
      x10 = -x1cout - dx1;
      x2 = -x2cout - dx2;
3691
      pixin = prof->pix;
3692
      if (prof->code==MODEL_EXPONENTIAL)
3693
        for (ix2=nx2; ix2--; x2+=1.0)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3694
          {
3695
3696
          x1 = x10;
          for (ix1=profit->modnaxisn[0]; ix1--; x1+=1.0)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3697
            {
3698
3699
3700
3701
            x1in = cd12*x2 + cd11*x1;
            x2in = cd22*x2 + cd21*x1;
            ra = x1in*x1in+x2in*x2in;
            if (ra>r2max)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3702
              {
3703
3704
              *(pixin++) = 0.0;
              continue;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3705
              }
3706
3707
            val = ra<rs2? a0+ra*(a2+a3*sqrtf(ra)) : expf(-sqrtf(ra));
            *(pixin++) = val;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3708
3709
            }
          }
3710
3711
      else
        for (ix2=nx2; ix2--; x2+=1.0)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3712
          {
3713
3714
          x1 = x10;
          for (ix1=profit->modnaxisn[0]; ix1--; x1+=1.0)
3715
            {
3716
3717
3718
3719
            x1in = cd12*x2 + cd11*x1;
            x2in = cd22*x2 + cd21*x1;
            ra = x1in*x1in+x2in*x2in;
            if (ra>r2max)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3720
              {
3721
3722
              *(pixin++) = 0.0;
              continue;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3723
              }
3724
3725
            val = ra<rs2? a0+ra*(a2+a3*sqrtf(ra)) : expf(k*expf(logf(ra)*hinvn));
            *(pixin++) = val;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3726
3727
            }
          }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3728
3729
3730
/*---- Copy the symmetric part */
      if ((npix2=(profit->modnaxisn[1]-nx2)*profit->modnaxisn[0]) > 0)
        {
3731
3732
3733
3734
3735
3736
        pixin2 = pixin - profit->modnaxisn[0] - 1;
        if (!(profit->modnaxisn[0]&1))
          {
          *(pixin++) = 0.0;
          npix2--;
          }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3737
3738
3739
        for (i=npix2; i--;)
          *(pixin++) = *(pixin2--);
        }
3740
3741
3742
3743
3744
3745
3746
3747
3748
3749
3750
3751
3752
3753
3754

/*---- Compute the sharp part of the profile */
      ix1max = profit->modnaxisn[0];
      ix2max = profit->modnaxisn[1];
      dx1cout = x1cout + 0.4999999;
      dx2cout = x2cout + 0.4999999;
      invdet = 1.0/fabsf(cd11*cd22 - cd12*cd21);
      a11 = cd22*invdet;
      a12 = -cd12*invdet;
      a21 = -cd21*invdet;
      a22 = cd11*invdet;
      nang = 72 / 2;		/* 36 angles; only half of them are computed*/
      angstep = PI/nang;
      ang = 0.0;
      for (a=0; a<nang; a++)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3755
        {
3756
#ifdef HAVE_SINCOSF
3757
3758
3759
3760
3761
3762
3763
        sincosf(ang, &dsa, &dca);
#else
        dsa = sinf(ang);
        dca = cosf(ang);
#endif
        ddx1[a] = a11*dsa+a12*dca;
        ddx2[a] = a21*dsa+a22*dca;
3764
        ang += angstep;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3765
        }
3766
3767
3768
3769
3770
3771
3772
      r = DEXPF(-4.0);
      dr = DEXPF(0.05);
      selem = 0.5*angstep*(dr - 1.0/dr)/(xscale*yscale);
      krpinvn = k*DEXPF(-4.0*invn);
      dkrpinvn = DEXPF(0.05*invn);
      pixin = prof->pix;
      for (; r<rs; r *= dr)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3773
        {
3774
3775
3776
        r2 = r*r;
        val = (expf(krpinvn) - (a0 + r2*(a2+a3*r)))*r2*selem;
        for (a=0; a<nang; a++)
3777
          {
3778
3779
3780
3781
3782
3783
3784
3785
          ix1 = (int)(dx1cout + r*ddx1[a]);
          ix2 = (int)(dx2cout + r*ddx2[a]);
          if (ix1>=0 && ix1<ix1max && ix2>=0 && ix2<ix2max)
            pixin[ix2*ix1max+ix1] += val;
          ix1 = (int)(dx1cout - r*ddx1[a]);
          ix2 = (int)(dx2cout - r*ddx2[a]);
          if (ix1>=0 && ix1<ix1max && ix2>=0 && ix2<ix2max)
            pixin[ix2*ix1max+ix1] += val;
3786
          }
3787
        krpinvn *= dkrpinvn;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3788
        }
3789

3790
      prof->lostfluxfrac = prof->code==MODEL_EXPONENTIAL?
3791
3792
		(1.0 + rmax)*exp(-rmax)
		:1.0 - prof_gammainc(2.0*n, bn*pow(r2max, hinvn));
3793
      threshflag = 0;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3794
      break;
3795
    case MODEL_ARMS:
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3796
3797
3798
3799
3800
3801
3802
3803
3804
3805
3806
3807
3808
3809
3810
3811
3812
      r2min = *prof->featstart**prof->featstart;
      r2minxin = r2min * (1.0 - PROFIT_BARXFADE) * (1.0 - PROFIT_BARXFADE);
      r2minxout = r2min * (1.0 + PROFIT_BARXFADE) * (1.0 + PROFIT_BARXFADE);
      if ((invr2xdif = (r2minxout - r2minxin)) > 0.0)
        invr2xdif = 1.0 / invr2xdif;
      else
        invr2xdif = 1.0;
      umin = 0.5*logf(r2minxin + 0.00001);
      arm2amp = *prof->featfrac;
      armamp = 1.0 - arm2amp;
      armrdphidr = 1.0/tan(*prof->featpitch*DEG);
      armrdphidrvar = 0.0 /**prof->featpitchvar*/;
      posang = *prof->featposang*DEG;
      width = fabs(*prof->featwidth);
width = 3.0;
      x1 = -x1cout - dx1;
      x2 = -x2cout - dx2;
3813
      pixin = prof->pix;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3814
3815
3816
3817
3818
3819
3820
3821
3822
3823
3824
3825
3826
3827
3828
3829
3830
3831
3832
3833
3834
3835
3836
3837
3838
3839
3840
3841
3842
      for (ix2=profit->modnaxisn[1]; ix2--; x2+=1.0)
        {
        x1t = cd12*x2 + cd11*x1;
        x2t = cd22*x2 + cd21*x1;
        for (ix1=profit->modnaxisn[0]; ix1--;)
          {
          r2 = x1t*x1t+x2t*x2t;
          if (r2>r2minxin)
            {
            u = 0.5*logf(r2 + 0.00001);
            theta = (armrdphidr+armrdphidrvar*(u-umin))*u+posang;
            ca = cosf(theta);
            sa = sinf(theta);
            x1in = (x1t*ca - x2t*sa);
            x2in = (x1t*sa + x2t*ca);
            amp = expf(-sqrtf(x1t*x1t+x2t*x2t));
            if (r2<r2minxout)
              amp *= (r2 - r2minxin)*invr2xdif;
            ra = x1in*x1in/r2;
            rb = x2in*x2in/r2;
            *(pixin++) = amp * (armamp*PROFIT_POWF(ra,width)
				+ arm2amp*PROFIT_POWF(rb,width));
            }
          else
            *(pixin++) = 0.0;
          x1t += cd11;
          x2t += cd21; 
         }
        }
3843
3844
      prof->lostfluxfrac = 0.0;
      threshflag = 1;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3845
      break;
3846
    case MODEL_BAR:
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3847
3848
3849
3850
3851
3852
3853
3854
3855
3856
3857
3858
3859
      r2min = *prof->featstart**prof->featstart;
      r2minxin = r2min * (1.0 - PROFIT_BARXFADE) * (1.0 - PROFIT_BARXFADE);
      r2minxout = r2min * (1.0 + PROFIT_BARXFADE) * (1.0 + PROFIT_BARXFADE);
      if ((invr2xdif = (r2minxout - r2minxin)) > 0.0)
        invr2xdif = 1.0 / invr2xdif;
      else
        invr2xdif = 1.0;
      invwidth2 = fabs(1.0 / (*prof->featstart**prof->feataspect));
      posang = *prof->featposang*DEG;
      ca = cosf(posang);
      sa = sinf(posang);
      x1 = -x1cout - dx1;
      x2 = -x2cout - dx2;
3860
      pixin = prof->pix;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3861
3862
3863
3864
3865
3866
3867
3868
3869
3870
3871
3872
3873
3874
3875
3876
3877
3878
3879
3880
3881
      for (ix2=profit->modnaxisn[1]; ix2--; x2+=1.0)
        {
        x1t = cd12*x2 + cd11*x1;
        x2t = cd22*x2 + cd21*x1;
        for (ix1=profit->modnaxisn[0]; ix1--;)
          {
          r2 = x1t*x1t+x2t*x2t;
          if (r2<r2minxout)
            {
            x1in = x1t*ca - x2t*sa;
            x2in = invwidth2*(x1t*sa + x2t*ca);
            *(pixin++) = (r2>r2minxin) ?
				(r2minxout - r2)*invr2xdif*expf(-x2in*x2in)
				: expf(-x2in*x2in);
            }
          else
            *(pixin++) = 0.0;
          x1t += cd11;
          x2t += cd21;
          }
        }
3882
3883
      prof->lostfluxfrac = 0.0;
      threshflag = 1;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3884
      break;
3885
    case MODEL_INRING:
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3886
3887
3888
3889
3890
3891
3892
3893
3894
3895
3896
3897
      rmin = *prof->featstart;
      r2minxin = *prof->featstart-4.0**prof->featwidth;
      if (r2minxin < 0.0)
        r2minxin = 0.0;
      r2minxin *= r2minxin;
      r2minxout = *prof->featstart+4.0**prof->featwidth;
      r2minxout *= r2minxout;
      invwidth2 = 0.5 / (*prof->featwidth**prof->featwidth);
      cd22 /= *prof->feataspect;
      cd21 /= *prof->feataspect;
      x1 = -x1cout - dx1;
      x2 = -x2cout - dx2;
3898
      pixin = prof->pix;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3899
3900
3901
3902
3903
3904
3905
3906
3907
3908
3909
3910
3911
3912
3913
3914
3915
3916
      for (ix2=profit->modnaxisn[1]; ix2--; x2+=1.0)
        {
        x1t = cd12*x2 + cd11*x1;
        x2t = cd22*x2 + cd21*x1;
        for (ix1=profit->modnaxisn[0]; ix1--;)
          {
          r2 = x1t*x1t+x2t*x2t;
          if (r2>r2minxin && r2<r2minxout)
            {
            r = sqrt(r2) - rmin;
            *(pixin++) = expf(-invwidth2*r*r);
            }
          else
            *(pixin++) = 0.0;
          x1t += cd11;
          x2t += cd21;
          }
        }
3917
3918
      prof->lostfluxfrac = 0.0;
      threshflag = 1;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3919
      break;
3920
    case MODEL_OUTRING:
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3921
3922
3923
3924
3925
3926
3927
3928
3929
3930
      rmin = *prof->featstart;
      r2minxin = *prof->featstart-4.0**prof->featwidth;
      if (r2minxin < 0.0)
        r2minxin = 0.0;
      r2minxin *= r2minxin;
      r2minxout = *prof->featstart+4.0**prof->featwidth;
      r2minxout *= r2minxout;
      invwidth2 = 0.5 / (*prof->featwidth**prof->featwidth);
      x1 = -x1cout - dx1;
      x2 = -x2cout - dx2;
3931
      pixin = prof->pix;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3932
3933
3934
3935
3936
3937
3938
3939
3940
3941
3942
3943
3944
3945
3946
3947
3948
3949
      for (ix2=profit->modnaxisn[1]; ix2--; x2+=1.0)
        {
        x1t = cd12*x2 + cd11*x1;
        x2t = cd22*x2 + cd21*x1;
        for (ix1=profit->modnaxisn[0]; ix1--;)
          {
          r2 = x1t*x1t+x2t*x2t;
          if (r2>r2minxin && r2<r2minxout)
            {
            r = sqrt(r2) - rmin;
            *(pixin++) = expf(-invwidth2*r*r);
            }
          else
            *(pixin++) = 0.0;
          x1t += cd11;
          x2t += cd21;
          }
        }
3950
3951
      prof->lostfluxfrac = 0.0;
      threshflag = 1;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3952
3953
3954
3955
3956
3957
3958
3959
3960
3961
3962
3963
3964
3965
3966
3967
3968
3969
3970
      break;
    default:
/*---- Tabulated profile: remap each pixel */
/*---- Initialize multi-dimensional counters */
     for (d=0; d<2; d++)
        {
        posout[d] = 1.0;	/* FITS convention */
        dnaxisn[d] = profit->modnaxisn[d] + 0.99999;
        }

      for (e=0; e<prof->naxis - 2; e++)
        {
        d = 2+e;
/*------ Compute position along axis */
        posin[d] = (*prof->extra[e]-prof->extrazero[e])/prof->extrascale[e]+1.0;
/*------ Keep position within boundaries and let interpolation do the rest */
        if (posin[d] < 0.99999)
          {
          if (prof->extracycleflag[e])
3971
            posin[d] += (float)prof->naxisn[d];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3972
3973
3974
          else
            posin[d] = 1.0;
          }
3975
        else if (posin[d] > (float)prof->naxisn[d])
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3976
3977
3978
          {
          if (prof->extracycleflag[e])
          posin[d] = (prof->extracycleflag[e])?
3979
3980
		  fmod(posin[d], (float)prof->naxisn[d])
		: (float)prof->naxisn[d];
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3981
3982
          }
        }
3983
3984
      x1cin = (float)(prof->naxisn[0]/2);
      x2cin = (float)(prof->naxisn[1]/2);
3985
      pixin = prof->pix;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
3986
3987
3988
3989
3990
3991
3992
3993
3994
3995
3996
3997
3998
      for (i=npix; i--;)
        {
        x1 = posout[0] - x1cout - 1.0 - dx1;
        x2 = posout[1] - x2cout - 1.0 - dx2;
        posin[0] = cd11*x1 + cd12*x2 + x1cin + 1.0;
        posin[1] = cd21*x1 + cd22*x2 + x2cin + 1.0;
        *(pixin++) = prof_interpolate(prof, posin);
        for (d=0; d<2; d++)
          if ((posout[d]+=1.0) < dnaxisn[d])
            break;
          else
            posout[d] = 1.0;
        }
3999
4000
      prof->lostfluxfrac = 0.0;
      threshflag = 1;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4001
4002
4003
    break;
    }

4004
4005
4006
4007
4008
4009
4010
4011
4012
4013
4014
4015
4016
4017
4018
4019
4020
/* For complex profiles, threshold to the brightest pixel value at border */
  if (threshflag)
    {
/*-- Now find truncation threshold */
/*-- Find the shortest distance to a vignet border */
    rmax = x1cout;
    if (rmax > (r = x2cout))
      rmax = r;
    rmax += 0.01;
    if (rmax<1.0)
      rmax = 1.0;
    r2max = rmax*rmax;
    rmin = rmax - 1.0;
    r2min = rmin*rmin;

/*-- Find best threshold (the max around the circle with radius rmax */
    dx2 = -x2cout;
4021
    pixin = prof->pix;
4022
4023
4024
4025
4026
4027
4028
4029
    thresh = -BIG;
    for (ix2=profit->modnaxisn[1]; ix2--; dx2 += 1.0)
      {
      dx1 = -x1cout;
      for (ix1=profit->modnaxisn[0]; ix1--; dx1 += 1.0)
        if ((val=*(pixin++))>thresh && (r2=dx1*dx1+dx2*dx2)>r2min && r2<r2max)
          thresh = val;
      }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4030

4031
4032
/*-- Threshold and measure the flux */
    flux = 0.0;
4033
    pixin = prof->pix;
4034
4035
4036
4037
4038
4039
4040
    for (i=npix; i--; pixin++)
      if (*pixin >= thresh)
        flux += (double)*pixin;
      else
        *pixin = 0.0;
    }
  else
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4041
    {
4042
    flux = 0.0;
4043
    pixin = prof->pix;
4044
4045
    for (i=npix; i--;)
      flux += (double)*(pixin++);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4046
4047
    }

4048
4049
4050
4051
4052
4053
4054
  if (extfluxfac_flag)
    fluxfac = prof->fluxfac;
  else
    {
    if (prof->lostfluxfrac < 1.0)
      flux /= (1.0 - prof->lostfluxfrac);

4055
    prof->fluxfac = fluxfac = fabs(flux)>0.0? profit->fluxfac/fabs(flux) : 0.0;
4056
4057
4058
4059
4060
    }

  pixin = prof->pix;
  for (i=npix; i--;)
    *(pixin++) *= fluxfac;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4061
4062

/* Correct final flux */
4063
4064
  fluxfac = *prof->flux;
  pixin = prof->pix;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4065
  pixout = profit->modpix;
4066
  for (i=npix; i--;)
4067
    *(pixout++) += fluxfac**(pixin++);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4068

4069
  return *prof->flux;
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4070
4071
4072
  }


4073
/****** prof_moments **********************************************************
4074
4075
PROTO	int	prof_moments(profitstruct *profit, profstruct *prof)
PURPOSE	Computes (analytically or numerically) the 2nd moments of a profile.
4076
INPUT	Profile-fitting structure,
4077
4078
4079
4080
	profile structure,
	optional pointer to 3xnparam Jacobian matrix.
OUTPUT	Index to the profile flux for further processing.
NOTES	.
4081
AUTHOR	E. Bertin (IAP)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4082
VERSION	20/08/2010
4083
 ***/
4084
int	prof_moments(profitstruct *profit, profstruct *prof, double *jac)
4085
  {
4086
4087
4088
4089
   double	*dmx2,*dmy2,*dmxy,
		m20, a2, ct,st, mx2fac, my2fac,mxyfac, dc2,ds2,dcs,
		bn,bn2, n,n2, nfac,nfac2, hscale2, dmdn;
   int		nparam, index;
4090

4091
4092
4093
4094
4095
4096
4097
4098
4099
  if (jac)
/*-- Clear output Jacobian */
    {
    nparam = profit->nparam;
    memset(jac, 0, nparam*3*sizeof(double));
    dmx2 = jac;
    dmy2 = jac + nparam;
    dmxy = jac + 2*nparam;
    }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4100
4101
4102
4103
4104
4105
4106
  else
    dmx2 = dmy2 = dmxy = NULL;		/* To avoid gcc -Wall warnings */

  m20 = 0.0;				/* to avoid gcc -Wall warnings */
  index = 0;				/* to avoid gcc -Wall warnings */


4107
4108
  if (prof->posangle)
    {
4109
4110
4111
4112
4113
4114
4115
4116
4117
4118
4119
4120
    a2 = *prof->aspect**prof->aspect;
    ct = cos(*prof->posangle*DEG);
    st = sin(*prof->posangle*DEG);
    mx2fac = ct*ct + st*st*a2;
    my2fac = st*st + ct*ct*a2;
    mxyfac = ct*st * (1.0 - a2);
    if (jac)
      {
      dc2 = -2.0*ct*st*DEG;
      ds2 =  2.0*ct*st*DEG;
      dcs = (ct*ct - st*st)*DEG;
      }
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4121
4122
    else
      dc2 = ds2 = dcs = 0.0;		/* To avoid gcc -Wall warnings */
4123
4124
    switch(prof->code)
      {
4125
      case MODEL_SERSIC:
4126
4127
4128
        n = fabs(*prof->extra[0]);
        bn = 2.0*n - 1.0/3.0 + 4.0/(405.0*n) + 46.0/(25515.0*n*n)
		+ 131.0/(1148175*n*n*n);	/* Ciotti & Bertin 1999 */
4129
4130
4131
4132
4133
4134
4135
4136
4137
4138
4139
4140
4141
4142
4143
4144
4145
4146
4147
4148
4149
4150
4151
4152
4153
4154
4155
4156
4157
4158
        nfac  = prof_gamma(4.0*n) / (prof_gamma(2.0*n)*pow(bn, 2.0*n));
        hscale2 = 0.5 * *prof->scale**prof->scale;
        m20 = hscale2 * nfac;
        if (jac)
          {
          dmx2[profit->paramindex[PARAM_SPHEROID_REFF]]
			= *prof->scale * nfac * mx2fac;
          dmy2[profit->paramindex[PARAM_SPHEROID_REFF]]
			= *prof->scale * nfac * my2fac;
          dmxy[profit->paramindex[PARAM_SPHEROID_REFF]]
			= *prof->scale * nfac * mxyfac;
          n2 = n+0.01;
          bn2 = 2.0*n2 - 1.0/3.0 + 4.0/(405.0*n2) + 46.0/(25515.0*n2*n2)
		+ 131.0/(1148175*n2*n2*n2);	/* Ciotti & Bertin 1999 */
          nfac2 = prof_gamma(4.0*n2) / (prof_gamma(2.0*n2)*pow(bn2, 2.0*n2));
          dmdn = 100.0 * hscale2 * (nfac2-nfac);
          dmx2[profit->paramindex[PARAM_SPHEROID_SERSICN]] = dmdn * mx2fac;
          dmy2[profit->paramindex[PARAM_SPHEROID_SERSICN]] = dmdn * my2fac;
          dmxy[profit->paramindex[PARAM_SPHEROID_SERSICN]] = dmdn * mxyfac;
          dmx2[profit->paramindex[PARAM_SPHEROID_ASPECT]]
			= 2.0 * m20 * st*st * *prof->aspect;
          dmy2[profit->paramindex[PARAM_SPHEROID_ASPECT]]
			= 2.0 * m20 * ct*ct * *prof->aspect;
          dmxy[profit->paramindex[PARAM_SPHEROID_ASPECT]]
			= -2.0 * m20 * ct*st * *prof->aspect;
          dmx2[profit->paramindex[PARAM_SPHEROID_POSANG]] = m20 * (dc2+ds2*a2);
          dmy2[profit->paramindex[PARAM_SPHEROID_POSANG]] = m20 * (ds2+dc2*a2);
          dmxy[profit->paramindex[PARAM_SPHEROID_POSANG]] = m20 * (1.0-a2)*dcs;
          }
        index = profit->paramindex[PARAM_SPHEROID_FLUX];
4159
        break; 
4160
      case MODEL_DEVAUCOULEURS:
4161
        m20 = 10.83995 * *prof->scale**prof->scale;
4162
4163
4164
4165
4166
4167
4168
4169
4170
4171
4172
4173
4174
4175
4176
4177
4178
4179
4180
        if (jac)
          {
          dmx2[profit->paramindex[PARAM_SPHEROID_REFF]]
			= 21.680 * *prof->scale * mx2fac;
          dmy2[profit->paramindex[PARAM_SPHEROID_REFF]]
			= 21.680 * *prof->scale * my2fac;
          dmxy[profit->paramindex[PARAM_SPHEROID_REFF]]
			= 21.680 * *prof->scale * mxyfac;
          dmx2[profit->paramindex[PARAM_SPHEROID_ASPECT]]
			= 2.0 * m20 * st*st * *prof->aspect;
          dmy2[profit->paramindex[PARAM_SPHEROID_ASPECT]]
			= 2.0 * m20 * ct*ct * *prof->aspect;
          dmxy[profit->paramindex[PARAM_SPHEROID_ASPECT]]
			= -2.0 * m20 * ct*st * *prof->aspect;
          dmx2[profit->paramindex[PARAM_SPHEROID_POSANG]] = m20 * (dc2+ds2*a2);
          dmy2[profit->paramindex[PARAM_SPHEROID_POSANG]] = m20 * (ds2+dc2*a2);
          dmxy[profit->paramindex[PARAM_SPHEROID_POSANG]] = m20 * (1.0-a2)*dcs;
          }
        index = profit->paramindex[PARAM_SPHEROID_FLUX];
4181
        break;
4182
      case MODEL_EXPONENTIAL:
4183
        m20 = 3.0 * *prof->scale**prof->scale;
4184
4185
4186
4187
4188
4189
4190
4191
4192
4193
4194
4195
4196
4197
4198
4199
4200
4201
4202
        if (jac)
          {
          dmx2[profit->paramindex[PARAM_DISK_SCALE]]
			= 6.0 * *prof->scale * mx2fac;
          dmy2[profit->paramindex[PARAM_DISK_SCALE]]
			= 6.0 * *prof->scale * my2fac;
          dmxy[profit->paramindex[PARAM_DISK_SCALE]]
			= 6.0 * *prof->scale * mxyfac;
          dmx2[profit->paramindex[PARAM_DISK_ASPECT]]
			= 2.0 * m20 * st*st * *prof->aspect;
          dmy2[profit->paramindex[PARAM_DISK_ASPECT]]
			= 2.0 * m20 * ct*ct * *prof->aspect;
          dmxy[profit->paramindex[PARAM_DISK_ASPECT]]
			= -2.0 * m20 * ct*st * *prof->aspect;
          dmx2[profit->paramindex[PARAM_DISK_POSANG]] = m20 * (dc2 + ds2*a2);
          dmy2[profit->paramindex[PARAM_DISK_POSANG]] = m20 * (ds2 + dc2*a2);
          dmxy[profit->paramindex[PARAM_DISK_POSANG]] = m20 * (1.0 - a2) * dcs;
          }
        index = profit->paramindex[PARAM_DISK_FLUX];
4203
        break;
4204
      case MODEL_ARMS:
4205
4206
4207
        m20 = 1.0;
        index = profit->paramindex[PARAM_ARMS_FLUX];
        break;
4208
      case MODEL_BAR:
4209
4210
4211
        m20 = 1.0;
        index = profit->paramindex[PARAM_BAR_FLUX];
        break;
4212
      case MODEL_INRING:
4213
4214
4215
        m20 = 1.0;
        index = profit->paramindex[PARAM_INRING_FLUX];
        break;
4216
      case MODEL_OUTRING:
4217
4218
        m20 = 1.0;
        index = profit->paramindex[PARAM_OUTRING_FLUX];
4219
4220
4221
4222
4223
4224
4225
        break;
      default:
        error(EXIT_FAILURE, "*Internal Error*: Unknown oriented model in ",
		"prof_moments()");
      break;
      }

4226
4227
4228
4229
    prof->mx2 = m20*mx2fac;
    prof->my2 = m20*my2fac;
    prof->mxy = m20*mxyfac;
    
4230
4231
4232
4233
    }
  else
    prof->mx2 = prof->my2 = prof->mxy = 0.0;

4234
  return index;
4235
4236
4237
  }


Emmanuel Bertin's avatar
Emmanuel Bertin committed
4238
/****** prof_interpolate ******************************************************
4239
PROTO	float	prof_interpolate(profstruct *prof, float *posin)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4240
4241
4242
4243
4244
4245
4246
4247
PURPOSE	Interpolate a multidimensional model profile at a given position.
INPUT	Profile structure,
	input position vector.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	10/12/2006
 ***/
4248
static float	prof_interpolate(profstruct *prof, float *posin)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4249
  {
4250
   float		dpos[2+PROFIT_MAXEXTRA],
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4251
4252
4253
4254
4255
4256
4257
4258
4259
4260
4261
4262
4263
4264
4265
4266
4267
4268
4269
4270
4271
4272
4273
4274
4275
4276
4277
4278
4279
4280
4281
4282
4283
4284
4285
4286
4287
4288
4289
4290
4291
4292
4293
4294
4295
4296
4297
4298
4299
4300
4301
4302
4303
4304
4305
4306
4307
4308
4309
4310
4311
4312
4313
4314
4315
4316
4317
4318
4319
4320
4321
4322
4323
4324
4325
4326
4327
4328
4329
4330
4331
4332
			kernel_vector[INTERP_MAXKERNELWIDTH],
			*kvector, *pixin,*pixout,
			val;
   long			step[2+PROFIT_MAXEXTRA],
			start, fac;
   int			linecount[2+PROFIT_MAXEXTRA],
			*naxisn,
			i,j,n, ival, nlines, kwidth,width, badpixflag, naxis;

  naxis = prof->naxis;
  naxisn = prof->naxisn;
  start = 0;
  fac = 1;
  for (n=0; n<naxis; n++)
    {
    val = *(posin++);
    width = *(naxisn++);
/*-- Get the integer part of the current coordinate or nearest neighbour */
    ival = (prof->interptype[n]==INTERP_NEARESTNEIGHBOUR)?
                                        (int)(val-0.50001):(int)val;
/*-- Store the fractional part of the current coordinate */
    dpos[n] = val - ival;
/*-- Check if interpolation start/end exceed image boundary... */
    kwidth = prof->kernelwidth[n];
    ival-=kwidth/2;
    if (ival<0 || ival+kwidth<=0 || ival+kwidth>width)
      return 0.0;

/*-- Update starting pointer */
    start += ival*fac;
/*-- Update step between interpolated regions */
    step[n] = fac*(width-kwidth);
    linecount[n] = 0.0;
    fac *= width;
    }

/* Update Interpolation kernel vectors */
  make_kernel(*dpos, kernel_vector, prof->interptype[0]);
  kwidth = prof->kernelwidth[0];
  nlines = prof->kernelnlines;
/* First step: interpolate along NAXIS1 from the data themselves */
  badpixflag = 0;
  pixin = prof->pix+start;
  pixout = prof->kernelbuf;
  for (j=nlines; j--;)
    {
    val = 0.0;
    kvector = kernel_vector;
    for (i=kwidth; i--;)
       val += *(kvector++)**(pixin++);
    *(pixout++) = val;
    for (n=1; n<naxis; n++)
      {
      pixin+=step[n-1];
      if (++linecount[n]<prof->kernelwidth[n])
        break;
      else
        linecount[n] = 0;       /* No need to initialize it to 0! */
      }
    }

/* Second step: interpolate along other axes from the interpolation buffer */
  for (n=1; n<naxis; n++)
    {
    make_kernel(dpos[n], kernel_vector, prof->interptype[n]);
    kwidth = prof->kernelwidth[n];
    pixout = pixin = prof->kernelbuf;
    for (j = (nlines/=kwidth); j--;)
      {
      val = 0.0;
      kvector = kernel_vector;
      for (i=kwidth; i--;)
        val += *(kvector++)**(pixin++);
      *(pixout++) = val;
     }
    }

  return prof->kernelbuf[0];
  }


/****** interpolate_pix ******************************************************
4333
PROTO	void interpolate_pix(float *posin, float *pix, int naxisn,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4334
4335
4336
4337
4338
4339
4340
4341
4342
4343
4344
		interpenum interptype)
PURPOSE	Interpolate a model profile at a given position.
INPUT	Profile structure,
	input position vector,
	input pixmap dimension vector,
	interpolation type.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
VERSION	07/12/2006
 ***/
4345
static float	interpolate_pix(float *posin, float *pix, int *naxisn,
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4346
4347
			interpenum interptype)
  {
4348
   float	buffer[INTERP_MAXKERNELWIDTH],
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4349
4350
4351
4352
4353
4354
4355
4356
4357
4358
4359
4360
4361
4362
4363
4364
4365
4366
4367
4368
4369
4370
4371
4372
4373
4374
4375
4376
4377
4378
4379
4380
4381
4382
4383
4384
4385
4386
4387
4388
4389
4390
4391
4392
4393
4394
4395
4396
4397
4398
4399
4400
4401
4402
4403
		kernel[INTERP_MAXKERNELWIDTH], dpos[2],
		*kvector, *pixin, *pixout,
		val;
   int		fac, ival, kwidth, start, width, step,
		i,j, n;

  kwidth = interp_kernwidth[interptype];
  start = 0;
  fac = 1;
  for (n=0; n<2; n++)
    {
    val = *(posin++);
    width = naxisn[n];
/*-- Get the integer part of the current coordinate or nearest neighbour */
    ival = (interptype==INTERP_NEARESTNEIGHBOUR)? (int)(val-0.50001):(int)val;
/*-- Store the fractional part of the current coordinate */
    dpos[n] = val - ival;
/*-- Check if interpolation start/end exceed image boundary... */
    ival-=kwidth/2;
    if (ival<0 || ival+kwidth<=0 || ival+kwidth>width)
      return 0.0;
/*-- Update starting pointer */
    start += ival*fac;
/*-- Update step between interpolated regions */
    fac *= width;
    }

/* First step: interpolate along NAXIS1 from the data themselves */
  make_kernel(dpos[0], kernel, interptype);
  step = naxisn[0]-kwidth;
  pixin = pix+start;
  pixout = buffer;
  for (j=kwidth; j--;)
    {
    val = 0.0;
    kvector = kernel;
    for (i=kwidth; i--;)
      val += *(kvector++)**(pixin++);
    *(pixout++) = val;
    pixin += step;
    }

/* Second step: interpolate along NAXIS2 from the interpolation buffer */
  make_kernel(dpos[1], kernel, interptype);
  pixin = buffer;
  val = 0.0;
  kvector = kernel;
  for (i=kwidth; i--;)
    val += *(kvector++)**(pixin++);

  return val;
  }


/****** make_kernel **********************************************************
4404
PROTO	void make_kernel(float pos, float *kernel, interpenum interptype)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4405
4406
4407
4408
4409
4410
4411
PURPOSE	Conpute interpolation-kernel data
INPUT	Position,
	Pointer to the output kernel data,
	Interpolation method.
OUTPUT	-.
NOTES	-.
AUTHOR	E. Bertin (IAP)
4412
VERSION	25/07/2011
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4413
 ***/
4414
void	make_kernel(float pos, float *kernel, interpenum interptype)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4415
  {
4416
   float	x, val, sinx1,sinx2,sinx3,cosx1;
4417

Emmanuel Bertin's avatar
Emmanuel Bertin committed
4418
4419
4420
4421
4422
4423
4424
4425
4426
  if (interptype == INTERP_NEARESTNEIGHBOUR)
    *kernel = 1;
  else if (interptype == INTERP_BILINEAR)
    {
    *(kernel++) = 1.0-pos;
    *kernel = pos;
    }
  else if (interptype == INTERP_LANCZOS2)
    {
4427
    if (pos<1e-5 && pos>-1e-5)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4428
4429
4430
4431
4432
4433
4434
4435
4436
      {
      *(kernel++) = 0.0;
      *(kernel++) = 1.0;
      *(kernel++) = 0.0;
      *kernel = 0.0;
      }
    else
      {
      x = -PI/2.0*(pos+1.0);
4437
#ifdef HAVE_SINCOSF
4438
      sincosf(x, &sinx1, &cosx1);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4439
#else
4440
4441
      sinx1 = sinf(x);
      cosx1 = cosf(x);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4442
4443
4444
4445
4446
4447
4448
4449
4450
4451
4452
4453
4454
4455
4456
4457
4458
#endif
      val = (*(kernel++) = sinx1/(x*x));
      x += PI/2.0;
      val += (*(kernel++) = -cosx1/(x*x));
      x += PI/2.0;
      val += (*(kernel++) = -sinx1/(x*x));
      x += PI/2.0;
      val += (*kernel = cosx1/(x*x));
      val = 1.0/val;
      *(kernel--) *= val;
      *(kernel--) *= val;
      *(kernel--) *= val;
      *kernel *= val;
      }
    }
  else if (interptype == INTERP_LANCZOS3)
    {
4459
    if (pos<1e-5 && pos>-1e-5)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4460
4461
4462
4463
4464
4465
4466
4467
4468
4469
4470
      {
      *(kernel++) = 0.0;
      *(kernel++) = 0.0;
      *(kernel++) = 1.0;
      *(kernel++) = 0.0;
      *(kernel++) = 0.0;
      *kernel = 0.0;
      }
    else
      {
      x = -PI/3.0*(pos+2.0);
4471
#ifdef HAVE_SINCOSF
4472
      sincosf(x, &sinx1, &cosx1);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4473
#else
4474
4475
      sinx1 = sinf(x);
      cosx1 = cosf(x);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4476
4477
4478
4479
4480
4481
4482
4483
4484
4485
4486
4487
4488
4489
4490
4491
4492
4493
4494
4495
4496
4497
4498
4499
4500
#endif
      val = (*(kernel++) = sinx1/(x*x));
      x += PI/3.0;
      val += (*(kernel++) = (sinx2=-0.5*sinx1-0.866025403785*cosx1)
				/ (x*x));
      x += PI/3.0;
      val += (*(kernel++) = (sinx3=-0.5*sinx1+0.866025403785*cosx1)
				/(x*x));
      x += PI/3.0;
      val += (*(kernel++) = sinx1/(x*x));
      x += PI/3.0;
      val += (*(kernel++) = sinx2/(x*x));
      x += PI/3.0;
      val += (*kernel = sinx3/(x*x));
      val = 1.0/val;
      *(kernel--) *= val;
      *(kernel--) *= val;
      *(kernel--) *= val;
      *(kernel--) *= val;
      *(kernel--) *= val;
      *kernel *= val;
      }
    }
  else if (interptype == INTERP_LANCZOS4)
    {
4501
    if (pos<1e-5 && pos>-1e-5)
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4502
4503
4504
4505
4506
4507
4508
4509
4510
4511
4512
4513
4514
      {
      *(kernel++) = 0.0;
      *(kernel++) = 0.0;
      *(kernel++) = 0.0;
      *(kernel++) = 1.0;
      *(kernel++) = 0.0;
      *(kernel++) = 0.0;
      *(kernel++) = 0.0;
      *kernel = 0.0;
      }
    else
      {
      x = -PI/4.0*(pos+3.0);
4515
#ifdef HAVE_SINCOSF
4516
      sincosf(x, &sinx1, &cosx1);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4517
#else
4518
4519
      sinx1 = sinf(x);
      cosx1 = cosf(x);
Emmanuel Bertin's avatar
Emmanuel Bertin committed
4520
4521
4522
4523
4524
4525
4526
4527
4528
4529
4530
4531
4532
4533
4534
4535
4536
4537
4538
4539
4540
4541
4542
4543
4544
4545
4546
4547
4548
4549
4550
4551
4552
4553
4554
#endif
      val = (*(kernel++) = sinx1/(x*x));
      x += PI/4.0;
      val +=(*(kernel++) = -(sinx2=0.707106781186*(sinx1+cosx1))
				/(x*x));
      x += PI/4.0;
      val += (*(kernel++) = cosx1/(x*x));
      x += PI/4.0;
      val += (*(kernel++) = -(sinx3=0.707106781186*(cosx1-sinx1))/(x*x));
      x += PI/4.0;
      val += (*(kernel++) = -sinx1/(x*x));
      x += PI/4.0;
      val += (*(kernel++) = sinx2/(x*x));
      x += PI/4.0;
      val += (*(kernel++) = -cosx1/(x*x));
      x += PI/4.0;
      val += (*kernel = sinx3/(x*x));
      val = 1.0/val;
      *(kernel--) *= val;
      *(kernel--) *= val;
      *(kernel--) *= val;
      *(kernel--) *= val;
      *(kernel--) *= val;
      *(kernel--) *= val;
      *(kernel--) *= val;
      *kernel *= val;
      }
    }
  else
    error(EXIT_FAILURE, "*Internal Error*: Unknown interpolation type in ",
		"make_kernel()");

  return;
  }